Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04470 and MPMX20_04471 overlap by 4 nucleotides MPMX20_04471 and MPMX20_04472 are separated by 21 nucleotides MPMX20_04472 and MPMX20_04473 are separated by 2 nucleotides
MPMX20_04470: MPMX20_04470 - Porphobilinogen deaminase, at 4,675,583 to 4,676,545
_04470
MPMX20_04471: MPMX20_04471 - Uroporphyrinogen-III synthase, at 4,676,542 to 4,677,282
_04471
MPMX20_04472: MPMX20_04472 - Protein HemX, at 4,677,304 to 4,678,497
_04472
MPMX20_04473: MPMX20_04473 - Protein HemY, at 4,678,500 to 4,679,699
_04473
Position (kb)
4677
4678
4679 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4677.272 kb on + strand at 4677.315 kb on + strand at 4677.333 kb on + strand at 4677.334 kb on + strand at 4677.342 kb on + strand at 4677.360 kb on + strand at 4677.420 kb on + strand at 4677.521 kb on - strand, within MPMX20_04472 at 4677.543 kb on + strand, within MPMX20_04472 at 4677.763 kb on - strand, within MPMX20_04472 at 4677.763 kb on - strand, within MPMX20_04472 at 4677.981 kb on + strand, within MPMX20_04472 at 4678.096 kb on + strand, within MPMX20_04472 at 4678.177 kb on - strand, within MPMX20_04472 at 4678.189 kb on + strand, within MPMX20_04472 at 4678.242 kb on + strand, within MPMX20_04472 at 4678.247 kb on + strand, within MPMX20_04472 at 4678.552 kb on + strand at 4678.594 kb on - strand at 4678.616 kb on - strand at 4678.664 kb on + strand, within MPMX20_04473 at 4678.664 kb on - strand, within MPMX20_04473 at 4678.750 kb on + strand, within MPMX20_04473 at 4678.896 kb on + strand, within MPMX20_04473 at 4678.896 kb on + strand, within MPMX20_04473 at 4678.904 kb on - strand, within MPMX20_04473 at 4678.967 kb on + strand, within MPMX20_04473 at 4679.044 kb on - strand, within MPMX20_04473 at 4679.064 kb on - strand, within MPMX20_04473 at 4679.064 kb on - strand, within MPMX20_04473 at 4679.143 kb on + strand, within MPMX20_04473 at 4679.146 kb on - strand, within MPMX20_04473 at 4679.194 kb on + strand, within MPMX20_04473 at 4679.241 kb on + strand, within MPMX20_04473 at 4679.321 kb on - strand, within MPMX20_04473 at 4679.326 kb on - strand, within MPMX20_04473 at 4679.343 kb on + strand, within MPMX20_04473 at 4679.348 kb on + strand, within MPMX20_04473 at 4679.363 kb on - strand, within MPMX20_04473 at 4679.378 kb on + strand, within MPMX20_04473 at 4679.393 kb on + strand, within MPMX20_04473 at 4679.420 kb on + strand, within MPMX20_04473 at 4679.420 kb on - strand, within MPMX20_04473 at 4679.433 kb on - strand, within MPMX20_04473 at 4679.459 kb on + strand, within MPMX20_04473 at 4679.459 kb on + strand, within MPMX20_04473 at 4679.467 kb on - strand, within MPMX20_04473 at 4679.467 kb on - strand, within MPMX20_04473 at 4679.479 kb on + strand, within MPMX20_04473 at 4679.484 kb on + strand, within MPMX20_04473 at 4679.492 kb on - strand, within MPMX20_04473 at 4679.494 kb on - strand, within MPMX20_04473
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,677,272 + +0.1 4,677,315 + -0.0 4,677,333 + +0.7 4,677,334 + -2.7 4,677,342 + +0.5 4,677,360 + +0.2 4,677,420 + -0.4 4,677,521 - MPMX20_04472 0.18 -2.4 4,677,543 + MPMX20_04472 0.20 -1.9 4,677,763 - MPMX20_04472 0.38 -1.1 4,677,763 - MPMX20_04472 0.38 -0.9 4,677,981 + MPMX20_04472 0.57 -2.3 4,678,096 + MPMX20_04472 0.66 -1.8 4,678,177 - MPMX20_04472 0.73 -2.4 4,678,189 + MPMX20_04472 0.74 +1.3 4,678,242 + MPMX20_04472 0.79 -0.2 4,678,247 + MPMX20_04472 0.79 -1.6 4,678,552 + -0.4 4,678,594 - -0.8 4,678,616 - -0.8 4,678,664 + MPMX20_04473 0.14 -3.3 4,678,664 - MPMX20_04473 0.14 +0.6 4,678,750 + MPMX20_04473 0.21 -0.5 4,678,896 + MPMX20_04473 0.33 -0.7 4,678,896 + MPMX20_04473 0.33 +0.2 4,678,904 - MPMX20_04473 0.34 -1.2 4,678,967 + MPMX20_04473 0.39 +1.6 4,679,044 - MPMX20_04473 0.45 -2.7 4,679,064 - MPMX20_04473 0.47 -0.4 4,679,064 - MPMX20_04473 0.47 +1.7 4,679,143 + MPMX20_04473 0.54 -1.6 4,679,146 - MPMX20_04473 0.54 +0.7 4,679,194 + MPMX20_04473 0.58 -0.1 4,679,241 + MPMX20_04473 0.62 -0.1 4,679,321 - MPMX20_04473 0.68 -0.3 4,679,326 - MPMX20_04473 0.69 -0.0 4,679,343 + MPMX20_04473 0.70 -1.7 4,679,348 + MPMX20_04473 0.71 +0.7 4,679,363 - MPMX20_04473 0.72 -0.7 4,679,378 + MPMX20_04473 0.73 -1.7 4,679,393 + MPMX20_04473 0.74 +0.3 4,679,420 + MPMX20_04473 0.77 -0.9 4,679,420 - MPMX20_04473 0.77 -2.2 4,679,433 - MPMX20_04473 0.78 +1.7 4,679,459 + MPMX20_04473 0.80 +0.7 4,679,459 + MPMX20_04473 0.80 +0.9 4,679,467 - MPMX20_04473 0.81 +0.5 4,679,467 - MPMX20_04473 0.81 -1.5 4,679,479 + MPMX20_04473 0.82 +0.6 4,679,484 + MPMX20_04473 0.82 -2.4 4,679,492 - MPMX20_04473 0.83 -1.4 4,679,494 - MPMX20_04473 0.83 -0.1
Or see this region's nucleotide sequence