Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02473 and MPMX20_02474 are separated by 88 nucleotides MPMX20_02474 and MPMX20_02475 overlap by 4 nucleotides MPMX20_02475 and MPMX20_02476 overlap by 14 nucleotides
MPMX20_02473: MPMX20_02473 - Psp operon transcriptional activator, at 2,612,916 to 2,613,893
_02473
MPMX20_02474: MPMX20_02474 - Peptide transport periplasmic protein SapA, at 2,613,982 to 2,615,622
_02474
MPMX20_02475: MPMX20_02475 - Putrescine export system permease protein SapB, at 2,615,619 to 2,616,584
_02475
MPMX20_02476: MPMX20_02476 - Putrescine export system permease protein SapC, at 2,616,571 to 2,617,461
_02476
Position (kb)
2613
2614
2615
2616 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2612.986 kb on - strand at 2613.090 kb on - strand, within MPMX20_02473 at 2613.099 kb on + strand, within MPMX20_02473 at 2613.099 kb on + strand, within MPMX20_02473 at 2613.109 kb on - strand, within MPMX20_02473 at 2613.153 kb on + strand, within MPMX20_02473 at 2613.342 kb on + strand, within MPMX20_02473 at 2613.350 kb on - strand, within MPMX20_02473 at 2613.350 kb on - strand, within MPMX20_02473 at 2613.350 kb on - strand, within MPMX20_02473 at 2613.377 kb on + strand, within MPMX20_02473 at 2613.435 kb on + strand, within MPMX20_02473 at 2613.443 kb on - strand, within MPMX20_02473 at 2613.483 kb on + strand, within MPMX20_02473 at 2613.511 kb on - strand, within MPMX20_02473 at 2613.558 kb on - strand, within MPMX20_02473 at 2613.619 kb on + strand, within MPMX20_02473 at 2613.624 kb on + strand, within MPMX20_02473 at 2613.626 kb on - strand, within MPMX20_02473 at 2613.662 kb on + strand, within MPMX20_02473 at 2613.662 kb on + strand, within MPMX20_02473 at 2613.723 kb on - strand, within MPMX20_02473 at 2613.724 kb on - strand, within MPMX20_02473 at 2613.724 kb on - strand, within MPMX20_02473 at 2613.727 kb on + strand, within MPMX20_02473 at 2613.766 kb on + strand, within MPMX20_02473 at 2613.780 kb on - strand, within MPMX20_02473 at 2613.791 kb on + strand, within MPMX20_02473 at 2613.793 kb on + strand, within MPMX20_02473 at 2613.793 kb on + strand, within MPMX20_02473 at 2613.793 kb on + strand, within MPMX20_02473 at 2613.800 kb on - strand at 2613.801 kb on - strand at 2613.801 kb on - strand at 2613.857 kb on + strand at 2613.905 kb on - strand at 2613.905 kb on - strand at 2613.905 kb on - strand at 2613.941 kb on + strand at 2613.941 kb on + strand at 2613.947 kb on - strand at 2614.018 kb on - strand at 2614.020 kb on + strand at 2614.109 kb on - strand at 2614.115 kb on - strand at 2614.115 kb on - strand at 2614.157 kb on + strand, within MPMX20_02474 at 2614.171 kb on + strand, within MPMX20_02474 at 2614.243 kb on + strand, within MPMX20_02474 at 2614.304 kb on + strand, within MPMX20_02474 at 2614.446 kb on + strand, within MPMX20_02474 at 2614.507 kb on + strand, within MPMX20_02474 at 2614.530 kb on - strand, within MPMX20_02474 at 2614.553 kb on - strand, within MPMX20_02474 at 2614.858 kb on + strand, within MPMX20_02474 at 2614.863 kb on + strand, within MPMX20_02474 at 2614.866 kb on - strand, within MPMX20_02474 at 2614.905 kb on + strand, within MPMX20_02474 at 2614.913 kb on - strand, within MPMX20_02474 at 2614.915 kb on + strand, within MPMX20_02474 at 2614.979 kb on - strand, within MPMX20_02474 at 2615.023 kb on + strand, within MPMX20_02474 at 2615.023 kb on + strand, within MPMX20_02474 at 2615.025 kb on - strand, within MPMX20_02474 at 2615.031 kb on - strand, within MPMX20_02474 at 2615.031 kb on - strand, within MPMX20_02474 at 2615.079 kb on + strand, within MPMX20_02474 at 2615.102 kb on + strand, within MPMX20_02474 at 2615.123 kb on - strand, within MPMX20_02474 at 2615.232 kb on - strand, within MPMX20_02474 at 2615.329 kb on + strand, within MPMX20_02474 at 2615.337 kb on - strand, within MPMX20_02474 at 2615.425 kb on - strand, within MPMX20_02474 at 2615.499 kb on + strand at 2615.499 kb on + strand at 2615.576 kb on + strand at 2615.685 kb on - strand at 2615.709 kb on - strand at 2615.823 kb on - strand, within MPMX20_02475 at 2615.823 kb on - strand, within MPMX20_02475 at 2615.823 kb on - strand, within MPMX20_02475 at 2615.825 kb on + strand, within MPMX20_02475 at 2615.848 kb on + strand, within MPMX20_02475 at 2615.848 kb on + strand, within MPMX20_02475 at 2615.848 kb on + strand, within MPMX20_02475 at 2615.848 kb on + strand, within MPMX20_02475 at 2615.856 kb on - strand, within MPMX20_02475 at 2615.960 kb on + strand, within MPMX20_02475 at 2615.964 kb on - strand, within MPMX20_02475 at 2616.022 kb on + strand, within MPMX20_02475 at 2616.027 kb on + strand, within MPMX20_02475 at 2616.126 kb on + strand, within MPMX20_02475 at 2616.172 kb on + strand, within MPMX20_02475 at 2616.235 kb on + strand, within MPMX20_02475 at 2616.243 kb on - strand, within MPMX20_02475 at 2616.243 kb on - strand, within MPMX20_02475 at 2616.243 kb on - strand, within MPMX20_02475 at 2616.328 kb on - strand, within MPMX20_02475 at 2616.412 kb on + strand, within MPMX20_02475 at 2616.425 kb on - strand, within MPMX20_02475 at 2616.425 kb on - strand, within MPMX20_02475 at 2616.542 kb on + strand at 2616.585 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,612,986 - -0.3 2,613,090 - MPMX20_02473 0.18 -1.1 2,613,099 + MPMX20_02473 0.19 +0.3 2,613,099 + MPMX20_02473 0.19 -0.9 2,613,109 - MPMX20_02473 0.20 +0.5 2,613,153 + MPMX20_02473 0.24 +0.2 2,613,342 + MPMX20_02473 0.44 +0.6 2,613,350 - MPMX20_02473 0.44 +0.0 2,613,350 - MPMX20_02473 0.44 -0.0 2,613,350 - MPMX20_02473 0.44 -0.0 2,613,377 + MPMX20_02473 0.47 -0.4 2,613,435 + MPMX20_02473 0.53 +1.0 2,613,443 - MPMX20_02473 0.54 -1.3 2,613,483 + MPMX20_02473 0.58 -0.0 2,613,511 - MPMX20_02473 0.61 -1.2 2,613,558 - MPMX20_02473 0.66 +1.2 2,613,619 + MPMX20_02473 0.72 -0.5 2,613,624 + MPMX20_02473 0.72 -0.1 2,613,626 - MPMX20_02473 0.73 +0.0 2,613,662 + MPMX20_02473 0.76 -0.5 2,613,662 + MPMX20_02473 0.76 -0.3 2,613,723 - MPMX20_02473 0.83 +0.5 2,613,724 - MPMX20_02473 0.83 +0.5 2,613,724 - MPMX20_02473 0.83 +0.1 2,613,727 + MPMX20_02473 0.83 +0.9 2,613,766 + MPMX20_02473 0.87 -0.2 2,613,780 - MPMX20_02473 0.88 -0.1 2,613,791 + MPMX20_02473 0.89 -0.3 2,613,793 + MPMX20_02473 0.90 +1.8 2,613,793 + MPMX20_02473 0.90 +0.0 2,613,793 + MPMX20_02473 0.90 +1.3 2,613,800 - -0.8 2,613,801 - -2.1 2,613,801 - -0.4 2,613,857 + -0.0 2,613,905 - +1.0 2,613,905 - -0.1 2,613,905 - -0.5 2,613,941 + -0.5 2,613,941 + -2.1 2,613,947 - +0.0 2,614,018 - -0.6 2,614,020 + -1.1 2,614,109 - -2.3 2,614,115 - -1.8 2,614,115 - -3.4 2,614,157 + MPMX20_02474 0.11 -1.5 2,614,171 + MPMX20_02474 0.12 -1.8 2,614,243 + MPMX20_02474 0.16 -2.7 2,614,304 + MPMX20_02474 0.20 -1.0 2,614,446 + MPMX20_02474 0.28 +0.3 2,614,507 + MPMX20_02474 0.32 -1.4 2,614,530 - MPMX20_02474 0.33 +2.0 2,614,553 - MPMX20_02474 0.35 -2.0 2,614,858 + MPMX20_02474 0.53 +0.5 2,614,863 + MPMX20_02474 0.54 +0.3 2,614,866 - MPMX20_02474 0.54 -2.5 2,614,905 + MPMX20_02474 0.56 +0.2 2,614,913 - MPMX20_02474 0.57 -4.1 2,614,915 + MPMX20_02474 0.57 -0.7 2,614,979 - MPMX20_02474 0.61 -3.0 2,615,023 + MPMX20_02474 0.63 -1.7 2,615,023 + MPMX20_02474 0.63 +1.0 2,615,025 - MPMX20_02474 0.64 +0.3 2,615,031 - MPMX20_02474 0.64 -2.1 2,615,031 - MPMX20_02474 0.64 -2.0 2,615,079 + MPMX20_02474 0.67 +0.1 2,615,102 + MPMX20_02474 0.68 +0.2 2,615,123 - MPMX20_02474 0.70 -1.4 2,615,232 - MPMX20_02474 0.76 +0.6 2,615,329 + MPMX20_02474 0.82 -0.9 2,615,337 - MPMX20_02474 0.83 -1.7 2,615,425 - MPMX20_02474 0.88 -2.3 2,615,499 + +0.2 2,615,499 + -1.1 2,615,576 + +0.3 2,615,685 - -1.3 2,615,709 - -2.5 2,615,823 - MPMX20_02475 0.21 -2.9 2,615,823 - MPMX20_02475 0.21 -2.0 2,615,823 - MPMX20_02475 0.21 -2.7 2,615,825 + MPMX20_02475 0.21 -1.0 2,615,848 + MPMX20_02475 0.24 -1.5 2,615,848 + MPMX20_02475 0.24 -1.5 2,615,848 + MPMX20_02475 0.24 -1.5 2,615,848 + MPMX20_02475 0.24 -1.0 2,615,856 - MPMX20_02475 0.25 -3.0 2,615,960 + MPMX20_02475 0.35 -0.5 2,615,964 - MPMX20_02475 0.36 -2.1 2,616,022 + MPMX20_02475 0.42 -3.0 2,616,027 + MPMX20_02475 0.42 -1.0 2,616,126 + MPMX20_02475 0.52 -2.5 2,616,172 + MPMX20_02475 0.57 -1.8 2,616,235 + MPMX20_02475 0.64 -1.3 2,616,243 - MPMX20_02475 0.65 -0.5 2,616,243 - MPMX20_02475 0.65 -0.5 2,616,243 - MPMX20_02475 0.65 -1.5 2,616,328 - MPMX20_02475 0.73 -1.5 2,616,412 + MPMX20_02475 0.82 -2.3 2,616,425 - MPMX20_02475 0.83 -2.3 2,616,425 - MPMX20_02475 0.83 -2.5 2,616,542 + -1.2 2,616,585 + -2.7
Or see this region's nucleotide sequence