Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01400

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01399 and MPMX20_01400 overlap by 1 nucleotidesMPMX20_01400 and MPMX20_01401 are separated by 42 nucleotidesMPMX20_01401 and MPMX20_01402 are separated by 72 nucleotides MPMX20_01399: MPMX20_01399 - Urocanate hydratase, at 1,461,465 to 1,463,150 _01399 MPMX20_01400: MPMX20_01400 - Histidine ammonia-lyase, at 1,463,150 to 1,464,670 _01400 MPMX20_01401: MPMX20_01401 - hypothetical protein, at 1,464,713 to 1,465,189 _01401 MPMX20_01402: MPMX20_01402 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 1,465,262 to 1,466,569 _01402 Position (kb) 1463 1464 1465Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1462.233 kb on - strand, within MPMX20_01399at 1462.248 kb on + strand, within MPMX20_01399at 1462.248 kb on + strand, within MPMX20_01399at 1462.248 kb on + strand, within MPMX20_01399at 1462.248 kb on + strand, within MPMX20_01399at 1462.248 kb on + strand, within MPMX20_01399at 1462.256 kb on - strand, within MPMX20_01399at 1462.387 kb on - strand, within MPMX20_01399at 1462.396 kb on + strand, within MPMX20_01399at 1462.468 kb on + strand, within MPMX20_01399at 1462.503 kb on + strand, within MPMX20_01399at 1462.503 kb on + strand, within MPMX20_01399at 1462.520 kb on + strand, within MPMX20_01399at 1462.531 kb on + strand, within MPMX20_01399at 1462.539 kb on - strand, within MPMX20_01399at 1462.539 kb on - strand, within MPMX20_01399at 1462.557 kb on - strand, within MPMX20_01399at 1462.580 kb on + strand, within MPMX20_01399at 1462.626 kb on + strand, within MPMX20_01399at 1462.647 kb on - strand, within MPMX20_01399at 1462.675 kb on - strand, within MPMX20_01399at 1462.701 kb on + strand, within MPMX20_01399at 1462.701 kb on + strand, within MPMX20_01399at 1462.746 kb on - strand, within MPMX20_01399at 1462.875 kb on + strand, within MPMX20_01399at 1462.877 kb on + strand, within MPMX20_01399at 1462.885 kb on - strand, within MPMX20_01399at 1462.892 kb on - strand, within MPMX20_01399at 1463.027 kb on + strandat 1463.114 kb on - strandat 1463.157 kb on + strandat 1463.157 kb on + strandat 1463.175 kb on + strandat 1463.224 kb on + strandat 1463.263 kb on - strandat 1463.265 kb on + strandat 1463.416 kb on - strand, within MPMX20_01400at 1463.638 kb on - strand, within MPMX20_01400at 1463.721 kb on + strand, within MPMX20_01400at 1463.731 kb on + strand, within MPMX20_01400at 1463.739 kb on - strand, within MPMX20_01400at 1463.749 kb on - strand, within MPMX20_01400at 1463.776 kb on + strand, within MPMX20_01400at 1463.807 kb on + strand, within MPMX20_01400at 1463.809 kb on + strand, within MPMX20_01400at 1463.879 kb on - strand, within MPMX20_01400at 1463.978 kb on + strand, within MPMX20_01400at 1464.016 kb on + strand, within MPMX20_01400at 1464.016 kb on - strand, within MPMX20_01400at 1464.021 kb on - strand, within MPMX20_01400at 1464.021 kb on - strand, within MPMX20_01400at 1464.024 kb on - strand, within MPMX20_01400at 1464.027 kb on + strand, within MPMX20_01400at 1464.080 kb on - strand, within MPMX20_01400at 1464.204 kb on + strand, within MPMX20_01400at 1464.212 kb on - strand, within MPMX20_01400at 1464.307 kb on + strand, within MPMX20_01400at 1464.350 kb on + strand, within MPMX20_01400at 1464.350 kb on + strand, within MPMX20_01400at 1464.350 kb on + strand, within MPMX20_01400at 1464.396 kb on - strand, within MPMX20_01400at 1464.495 kb on + strand, within MPMX20_01400at 1464.495 kb on + strand, within MPMX20_01400at 1464.503 kb on - strand, within MPMX20_01400at 1464.503 kb on - strand, within MPMX20_01400at 1464.503 kb on - strand, within MPMX20_01400at 1464.512 kb on + strand, within MPMX20_01400at 1464.527 kb on - strandat 1464.527 kb on - strandat 1464.530 kb on + strandat 1464.642 kb on - strandat 1464.697 kb on - strandat 1464.792 kb on + strand, within MPMX20_01401at 1464.879 kb on + strand, within MPMX20_01401at 1464.886 kb on - strand, within MPMX20_01401at 1464.908 kb on + strand, within MPMX20_01401at 1464.908 kb on + strand, within MPMX20_01401at 1464.908 kb on + strand, within MPMX20_01401at 1464.916 kb on - strand, within MPMX20_01401at 1464.916 kb on - strand, within MPMX20_01401at 1464.929 kb on - strand, within MPMX20_01401at 1464.929 kb on - strand, within MPMX20_01401at 1464.940 kb on + strand, within MPMX20_01401at 1464.954 kb on - strand, within MPMX20_01401at 1464.989 kb on - strand, within MPMX20_01401at 1464.996 kb on + strand, within MPMX20_01401at 1464.999 kb on - strand, within MPMX20_01401at 1465.004 kb on - strand, within MPMX20_01401at 1465.004 kb on - strand, within MPMX20_01401at 1465.009 kb on + strand, within MPMX20_01401at 1465.012 kb on - strand, within MPMX20_01401at 1465.017 kb on - strand, within MPMX20_01401at 1465.033 kb on + strand, within MPMX20_01401at 1465.043 kb on + strand, within MPMX20_01401at 1465.048 kb on + strand, within MPMX20_01401at 1465.100 kb on + strand, within MPMX20_01401at 1465.240 kb on + strandat 1465.247 kb on + strandat 1465.259 kb on + strandat 1465.259 kb on + strandat 1465.259 kb on + strandat 1465.267 kb on - strandat 1465.267 kb on - strandat 1465.291 kb on - strandat 1465.301 kb on - strandat 1465.316 kb on - strandat 1465.390 kb on - strandat 1465.557 kb on - strand, within MPMX20_01402at 1465.594 kb on + strand, within MPMX20_01402at 1465.606 kb on + strand, within MPMX20_01402at 1465.612 kb on - strand, within MPMX20_01402

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
1,462,233 - MPMX20_01399 0.46 +0.2
1,462,248 + MPMX20_01399 0.46 -3.0
1,462,248 + MPMX20_01399 0.46 -2.0
1,462,248 + MPMX20_01399 0.46 -2.5
1,462,248 + MPMX20_01399 0.46 -2.3
1,462,248 + MPMX20_01399 0.46 -3.8
1,462,256 - MPMX20_01399 0.47 -4.7
1,462,387 - MPMX20_01399 0.55 -2.4
1,462,396 + MPMX20_01399 0.55 -3.1
1,462,468 + MPMX20_01399 0.59 -3.7
1,462,503 + MPMX20_01399 0.62 -4.2
1,462,503 + MPMX20_01399 0.62 -1.3
1,462,520 + MPMX20_01399 0.63 -4.0
1,462,531 + MPMX20_01399 0.63 -4.2
1,462,539 - MPMX20_01399 0.64 -0.8
1,462,539 - MPMX20_01399 0.64 -3.2
1,462,557 - MPMX20_01399 0.65 -4.2
1,462,580 + MPMX20_01399 0.66 -3.8
1,462,626 + MPMX20_01399 0.69 -1.9
1,462,647 - MPMX20_01399 0.70 -3.5
1,462,675 - MPMX20_01399 0.72 -2.7
1,462,701 + MPMX20_01399 0.73 -1.5
1,462,701 + MPMX20_01399 0.73 -4.3
1,462,746 - MPMX20_01399 0.76 -3.9
1,462,875 + MPMX20_01399 0.84 -3.2
1,462,877 + MPMX20_01399 0.84 -3.9
1,462,885 - MPMX20_01399 0.84 -2.7
1,462,892 - MPMX20_01399 0.85 -2.7
1,463,027 + -0.3
1,463,114 - -4.3
1,463,157 + -1.3
1,463,157 + -2.1
1,463,175 + -4.9
1,463,224 + -2.2
1,463,263 - -3.3
1,463,265 + -2.0
1,463,416 - MPMX20_01400 0.17 -1.1
1,463,638 - MPMX20_01400 0.32 -3.1
1,463,721 + MPMX20_01400 0.38 -3.7
1,463,731 + MPMX20_01400 0.38 -4.6
1,463,739 - MPMX20_01400 0.39 -1.1
1,463,749 - MPMX20_01400 0.39 -1.8
1,463,776 + MPMX20_01400 0.41 -1.5
1,463,807 + MPMX20_01400 0.43 -2.3
1,463,809 + MPMX20_01400 0.43 -1.8
1,463,879 - MPMX20_01400 0.48 -0.8
1,463,978 + MPMX20_01400 0.54 -3.2
1,464,016 + MPMX20_01400 0.57 -2.5
1,464,016 - MPMX20_01400 0.57 -4.4
1,464,021 - MPMX20_01400 0.57 -0.2
1,464,021 - MPMX20_01400 0.57 -3.4
1,464,024 - MPMX20_01400 0.57 -1.8
1,464,027 + MPMX20_01400 0.58 -2.1
1,464,080 - MPMX20_01400 0.61 -1.1
1,464,204 + MPMX20_01400 0.69 -3.7
1,464,212 - MPMX20_01400 0.70 -3.4
1,464,307 + MPMX20_01400 0.76 -1.5
1,464,350 + MPMX20_01400 0.79 -0.7
1,464,350 + MPMX20_01400 0.79 -3.2
1,464,350 + MPMX20_01400 0.79 -5.0
1,464,396 - MPMX20_01400 0.82 -3.6
1,464,495 + MPMX20_01400 0.88 -2.7
1,464,495 + MPMX20_01400 0.88 -2.6
1,464,503 - MPMX20_01400 0.89 -1.7
1,464,503 - MPMX20_01400 0.89 -3.8
1,464,503 - MPMX20_01400 0.89 -0.8
1,464,512 + MPMX20_01400 0.90 -3.7
1,464,527 - -1.7
1,464,527 - -2.7
1,464,530 + -1.3
1,464,642 - -1.3
1,464,697 - -4.3
1,464,792 + MPMX20_01401 0.17 +0.2
1,464,879 + MPMX20_01401 0.35 +1.6
1,464,886 - MPMX20_01401 0.36 -0.1
1,464,908 + MPMX20_01401 0.41 -1.3
1,464,908 + MPMX20_01401 0.41 -0.6
1,464,908 + MPMX20_01401 0.41 -0.1
1,464,916 - MPMX20_01401 0.43 +0.4
1,464,916 - MPMX20_01401 0.43 -0.4
1,464,929 - MPMX20_01401 0.45 +0.8
1,464,929 - MPMX20_01401 0.45 -1.5
1,464,940 + MPMX20_01401 0.48 +0.1
1,464,954 - MPMX20_01401 0.51 +0.0
1,464,989 - MPMX20_01401 0.58 -1.9
1,464,996 + MPMX20_01401 0.59 +0.7
1,464,999 - MPMX20_01401 0.60 -0.1
1,465,004 - MPMX20_01401 0.61 +1.1
1,465,004 - MPMX20_01401 0.61 +2.1
1,465,009 + MPMX20_01401 0.62 -0.4
1,465,012 - MPMX20_01401 0.63 -0.1
1,465,017 - MPMX20_01401 0.64 +0.8
1,465,033 + MPMX20_01401 0.67 -2.1
1,465,043 + MPMX20_01401 0.69 +0.7
1,465,048 + MPMX20_01401 0.70 +0.3
1,465,100 + MPMX20_01401 0.81 -1.5
1,465,240 + +1.2
1,465,247 + -1.8
1,465,259 + -0.6
1,465,259 + +0.1
1,465,259 + -1.1
1,465,267 - -1.4
1,465,267 - +0.7
1,465,291 - -2.0
1,465,301 - +1.2
1,465,316 - -1.8
1,465,390 - -1.1
1,465,557 - MPMX20_01402 0.23 +0.7
1,465,594 + MPMX20_01402 0.25 +0.4
1,465,606 + MPMX20_01402 0.26 -1.1
1,465,612 - MPMX20_01402 0.27 -0.1

Or see this region's nucleotide sequence