Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01397 and MPMX20_01398 are separated by 19 nucleotides MPMX20_01398 and MPMX20_01399 are separated by 136 nucleotides MPMX20_01399 and MPMX20_01400 overlap by 1 nucleotides
MPMX20_01397: MPMX20_01397 - Formimidoylglutamase, at 1,459,636 to 1,460,574
_01397
MPMX20_01398: MPMX20_01398 - HTH-type transcriptional repressor NagR, at 1,460,594 to 1,461,328
_01398
MPMX20_01399: MPMX20_01399 - Urocanate hydratase, at 1,461,465 to 1,463,150
_01399
MPMX20_01400: MPMX20_01400 - Histidine ammonia-lyase, at 1,463,150 to 1,464,670
_01400
Position (kb)
1461
1462
1463
1464 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1460.523 kb on + strand at 1460.562 kb on + strand at 1460.575 kb on - strand at 1460.586 kb on - strand at 1460.586 kb on - strand at 1460.713 kb on + strand, within MPMX20_01398 at 1460.737 kb on + strand, within MPMX20_01398 at 1460.771 kb on - strand, within MPMX20_01398 at 1460.803 kb on - strand, within MPMX20_01398 at 1460.824 kb on - strand, within MPMX20_01398 at 1460.910 kb on + strand, within MPMX20_01398 at 1460.910 kb on + strand, within MPMX20_01398 at 1460.913 kb on - strand, within MPMX20_01398 at 1460.916 kb on - strand, within MPMX20_01398 at 1460.941 kb on + strand, within MPMX20_01398 at 1460.941 kb on + strand, within MPMX20_01398 at 1460.941 kb on + strand, within MPMX20_01398 at 1460.941 kb on + strand, within MPMX20_01398 at 1460.944 kb on - strand, within MPMX20_01398 at 1460.949 kb on - strand, within MPMX20_01398 at 1460.949 kb on - strand, within MPMX20_01398 at 1460.949 kb on - strand, within MPMX20_01398 at 1460.963 kb on + strand, within MPMX20_01398 at 1461.035 kb on - strand, within MPMX20_01398 at 1461.037 kb on + strand, within MPMX20_01398 at 1461.049 kb on - strand, within MPMX20_01398 at 1461.060 kb on + strand, within MPMX20_01398 at 1461.088 kb on + strand, within MPMX20_01398 at 1461.088 kb on + strand, within MPMX20_01398 at 1461.088 kb on + strand, within MPMX20_01398 at 1461.094 kb on + strand, within MPMX20_01398 at 1461.102 kb on - strand, within MPMX20_01398 at 1461.103 kb on - strand, within MPMX20_01398 at 1461.216 kb on + strand, within MPMX20_01398 at 1461.216 kb on + strand, within MPMX20_01398 at 1461.226 kb on + strand, within MPMX20_01398 at 1461.447 kb on - strand at 1461.447 kb on - strand at 1461.547 kb on - strand at 1461.595 kb on + strand at 1461.595 kb on + strand at 1461.612 kb on - strand at 1461.626 kb on + strand at 1461.734 kb on + strand, within MPMX20_01399 at 1461.776 kb on + strand, within MPMX20_01399 at 1461.781 kb on + strand, within MPMX20_01399 at 1461.783 kb on - strand, within MPMX20_01399 at 1461.784 kb on - strand, within MPMX20_01399 at 1461.790 kb on - strand, within MPMX20_01399 at 1461.791 kb on + strand, within MPMX20_01399 at 1461.794 kb on - strand, within MPMX20_01399 at 1461.802 kb on + strand, within MPMX20_01399 at 1461.897 kb on + strand, within MPMX20_01399 at 1461.897 kb on + strand, within MPMX20_01399 at 1461.905 kb on - strand, within MPMX20_01399 at 1461.905 kb on - strand, within MPMX20_01399 at 1461.917 kb on - strand, within MPMX20_01399 at 1461.941 kb on - strand, within MPMX20_01399 at 1461.949 kb on - strand, within MPMX20_01399 at 1461.964 kb on + strand, within MPMX20_01399 at 1462.054 kb on - strand, within MPMX20_01399 at 1462.233 kb on - strand, within MPMX20_01399 at 1462.248 kb on + strand, within MPMX20_01399 at 1462.248 kb on + strand, within MPMX20_01399 at 1462.248 kb on + strand, within MPMX20_01399 at 1462.248 kb on + strand, within MPMX20_01399 at 1462.248 kb on + strand, within MPMX20_01399 at 1462.256 kb on - strand, within MPMX20_01399 at 1462.387 kb on - strand, within MPMX20_01399 at 1462.396 kb on + strand, within MPMX20_01399 at 1462.468 kb on + strand, within MPMX20_01399 at 1462.503 kb on + strand, within MPMX20_01399 at 1462.503 kb on + strand, within MPMX20_01399 at 1462.520 kb on + strand, within MPMX20_01399 at 1462.531 kb on + strand, within MPMX20_01399 at 1462.539 kb on - strand, within MPMX20_01399 at 1462.539 kb on - strand, within MPMX20_01399 at 1462.557 kb on - strand, within MPMX20_01399 at 1462.580 kb on + strand, within MPMX20_01399 at 1462.626 kb on + strand, within MPMX20_01399 at 1462.647 kb on - strand, within MPMX20_01399 at 1462.675 kb on - strand, within MPMX20_01399 at 1462.701 kb on + strand, within MPMX20_01399 at 1462.701 kb on + strand, within MPMX20_01399 at 1462.746 kb on - strand, within MPMX20_01399 at 1462.875 kb on + strand, within MPMX20_01399 at 1462.877 kb on + strand, within MPMX20_01399 at 1462.885 kb on - strand, within MPMX20_01399 at 1462.892 kb on - strand, within MPMX20_01399 at 1463.027 kb on + strand at 1463.114 kb on - strand at 1463.157 kb on + strand at 1463.157 kb on + strand at 1463.175 kb on + strand at 1463.224 kb on + strand at 1463.263 kb on - strand at 1463.265 kb on + strand at 1463.416 kb on - strand, within MPMX20_01400 at 1463.638 kb on - strand, within MPMX20_01400 at 1463.721 kb on + strand, within MPMX20_01400 at 1463.731 kb on + strand, within MPMX20_01400 at 1463.739 kb on - strand, within MPMX20_01400 at 1463.749 kb on - strand, within MPMX20_01400 at 1463.776 kb on + strand, within MPMX20_01400 at 1463.807 kb on + strand, within MPMX20_01400 at 1463.809 kb on + strand, within MPMX20_01400 at 1463.879 kb on - strand, within MPMX20_01400 at 1463.978 kb on + strand, within MPMX20_01400 at 1464.016 kb on + strand, within MPMX20_01400 at 1464.016 kb on - strand, within MPMX20_01400 at 1464.021 kb on - strand, within MPMX20_01400 at 1464.021 kb on - strand, within MPMX20_01400 at 1464.024 kb on - strand, within MPMX20_01400 at 1464.027 kb on + strand, within MPMX20_01400 at 1464.080 kb on - strand, within MPMX20_01400
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,460,523 + -4.8 1,460,562 + -1.1 1,460,575 - +3.2 1,460,586 - +0.2 1,460,586 - +1.4 1,460,713 + MPMX20_01398 0.16 +1.3 1,460,737 + MPMX20_01398 0.19 +0.6 1,460,771 - MPMX20_01398 0.24 +1.9 1,460,803 - MPMX20_01398 0.28 +2.8 1,460,824 - MPMX20_01398 0.31 -0.5 1,460,910 + MPMX20_01398 0.43 +1.4 1,460,910 + MPMX20_01398 0.43 +1.2 1,460,913 - MPMX20_01398 0.43 +1.1 1,460,916 - MPMX20_01398 0.44 +2.3 1,460,941 + MPMX20_01398 0.47 +1.0 1,460,941 + MPMX20_01398 0.47 -1.3 1,460,941 + MPMX20_01398 0.47 +0.5 1,460,941 + MPMX20_01398 0.47 +3.2 1,460,944 - MPMX20_01398 0.48 +3.3 1,460,949 - MPMX20_01398 0.48 +1.6 1,460,949 - MPMX20_01398 0.48 +2.5 1,460,949 - MPMX20_01398 0.48 +2.0 1,460,963 + MPMX20_01398 0.50 -0.9 1,461,035 - MPMX20_01398 0.60 +2.7 1,461,037 + MPMX20_01398 0.60 +0.3 1,461,049 - MPMX20_01398 0.62 +1.7 1,461,060 + MPMX20_01398 0.63 +2.1 1,461,088 + MPMX20_01398 0.67 +1.1 1,461,088 + MPMX20_01398 0.67 -0.5 1,461,088 + MPMX20_01398 0.67 +2.6 1,461,094 + MPMX20_01398 0.68 +1.3 1,461,102 - MPMX20_01398 0.69 +2.7 1,461,103 - MPMX20_01398 0.69 +2.2 1,461,216 + MPMX20_01398 0.85 +0.7 1,461,216 + MPMX20_01398 0.85 +1.3 1,461,226 + MPMX20_01398 0.86 -1.7 1,461,447 - -3.3 1,461,447 - -2.1 1,461,547 - -3.5 1,461,595 + -3.4 1,461,595 + -3.3 1,461,612 - -2.2 1,461,626 + -2.5 1,461,734 + MPMX20_01399 0.16 -3.6 1,461,776 + MPMX20_01399 0.18 -4.6 1,461,781 + MPMX20_01399 0.19 -3.9 1,461,783 - MPMX20_01399 0.19 -3.3 1,461,784 - MPMX20_01399 0.19 -4.3 1,461,790 - MPMX20_01399 0.19 -4.2 1,461,791 + MPMX20_01399 0.19 -4.0 1,461,794 - MPMX20_01399 0.20 +0.1 1,461,802 + MPMX20_01399 0.20 -2.0 1,461,897 + MPMX20_01399 0.26 -3.7 1,461,897 + MPMX20_01399 0.26 -4.7 1,461,905 - MPMX20_01399 0.26 -3.9 1,461,905 - MPMX20_01399 0.26 -1.3 1,461,917 - MPMX20_01399 0.27 -4.6 1,461,941 - MPMX20_01399 0.28 -2.2 1,461,949 - MPMX20_01399 0.29 -3.0 1,461,964 + MPMX20_01399 0.30 -1.7 1,462,054 - MPMX20_01399 0.35 -3.2 1,462,233 - MPMX20_01399 0.46 +0.2 1,462,248 + MPMX20_01399 0.46 -3.0 1,462,248 + MPMX20_01399 0.46 -2.0 1,462,248 + MPMX20_01399 0.46 -2.5 1,462,248 + MPMX20_01399 0.46 -2.3 1,462,248 + MPMX20_01399 0.46 -3.8 1,462,256 - MPMX20_01399 0.47 -4.7 1,462,387 - MPMX20_01399 0.55 -2.4 1,462,396 + MPMX20_01399 0.55 -3.1 1,462,468 + MPMX20_01399 0.59 -3.7 1,462,503 + MPMX20_01399 0.62 -4.2 1,462,503 + MPMX20_01399 0.62 -1.3 1,462,520 + MPMX20_01399 0.63 -4.0 1,462,531 + MPMX20_01399 0.63 -4.2 1,462,539 - MPMX20_01399 0.64 -0.8 1,462,539 - MPMX20_01399 0.64 -3.2 1,462,557 - MPMX20_01399 0.65 -4.2 1,462,580 + MPMX20_01399 0.66 -3.8 1,462,626 + MPMX20_01399 0.69 -1.9 1,462,647 - MPMX20_01399 0.70 -3.5 1,462,675 - MPMX20_01399 0.72 -2.7 1,462,701 + MPMX20_01399 0.73 -1.5 1,462,701 + MPMX20_01399 0.73 -4.3 1,462,746 - MPMX20_01399 0.76 -3.9 1,462,875 + MPMX20_01399 0.84 -3.2 1,462,877 + MPMX20_01399 0.84 -3.9 1,462,885 - MPMX20_01399 0.84 -2.7 1,462,892 - MPMX20_01399 0.85 -2.7 1,463,027 + -0.3 1,463,114 - -4.3 1,463,157 + -1.3 1,463,157 + -2.1 1,463,175 + -4.9 1,463,224 + -2.2 1,463,263 - -3.3 1,463,265 + -2.0 1,463,416 - MPMX20_01400 0.17 -1.1 1,463,638 - MPMX20_01400 0.32 -3.1 1,463,721 + MPMX20_01400 0.38 -3.7 1,463,731 + MPMX20_01400 0.38 -4.6 1,463,739 - MPMX20_01400 0.39 -1.1 1,463,749 - MPMX20_01400 0.39 -1.8 1,463,776 + MPMX20_01400 0.41 -1.5 1,463,807 + MPMX20_01400 0.43 -2.3 1,463,809 + MPMX20_01400 0.43 -1.8 1,463,879 - MPMX20_01400 0.48 -0.8 1,463,978 + MPMX20_01400 0.54 -3.2 1,464,016 + MPMX20_01400 0.57 -2.5 1,464,016 - MPMX20_01400 0.57 -4.4 1,464,021 - MPMX20_01400 0.57 -0.2 1,464,021 - MPMX20_01400 0.57 -3.4 1,464,024 - MPMX20_01400 0.57 -1.8 1,464,027 + MPMX20_01400 0.58 -2.1 1,464,080 - MPMX20_01400 0.61 -1.1
Or see this region's nucleotide sequence