Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01398

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01396 and MPMX20_01397 overlap by 4 nucleotidesMPMX20_01397 and MPMX20_01398 are separated by 19 nucleotidesMPMX20_01398 and MPMX20_01399 are separated by 136 nucleotides MPMX20_01396: MPMX20_01396 - Imidazolonepropionase, at 1,458,416 to 1,459,639 _01396 MPMX20_01397: MPMX20_01397 - Formimidoylglutamase, at 1,459,636 to 1,460,574 _01397 MPMX20_01398: MPMX20_01398 - HTH-type transcriptional repressor NagR, at 1,460,594 to 1,461,328 _01398 MPMX20_01399: MPMX20_01399 - Urocanate hydratase, at 1,461,465 to 1,463,150 _01399 Position (kb) 1460 1461 1462Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1459.640 kb on - strandat 1459.640 kb on - strandat 1459.690 kb on + strandat 1459.802 kb on + strand, within MPMX20_01397at 1459.818 kb on + strand, within MPMX20_01397at 1459.820 kb on - strand, within MPMX20_01397at 1459.868 kb on + strand, within MPMX20_01397at 1459.890 kb on - strand, within MPMX20_01397at 1459.966 kb on + strand, within MPMX20_01397at 1459.981 kb on - strand, within MPMX20_01397at 1460.047 kb on + strand, within MPMX20_01397at 1460.055 kb on - strand, within MPMX20_01397at 1460.099 kb on + strand, within MPMX20_01397at 1460.099 kb on + strand, within MPMX20_01397at 1460.099 kb on + strand, within MPMX20_01397at 1460.099 kb on + strand, within MPMX20_01397at 1460.107 kb on - strand, within MPMX20_01397at 1460.109 kb on + strand, within MPMX20_01397at 1460.165 kb on + strand, within MPMX20_01397at 1460.168 kb on - strand, within MPMX20_01397at 1460.206 kb on - strand, within MPMX20_01397at 1460.211 kb on - strand, within MPMX20_01397at 1460.268 kb on + strand, within MPMX20_01397at 1460.276 kb on - strand, within MPMX20_01397at 1460.296 kb on - strand, within MPMX20_01397at 1460.305 kb on + strand, within MPMX20_01397at 1460.310 kb on + strand, within MPMX20_01397at 1460.313 kb on - strand, within MPMX20_01397at 1460.348 kb on + strand, within MPMX20_01397at 1460.404 kb on + strand, within MPMX20_01397at 1460.456 kb on - strand, within MPMX20_01397at 1460.523 kb on + strandat 1460.562 kb on + strandat 1460.575 kb on - strandat 1460.586 kb on - strandat 1460.586 kb on - strandat 1460.713 kb on + strand, within MPMX20_01398at 1460.737 kb on + strand, within MPMX20_01398at 1460.771 kb on - strand, within MPMX20_01398at 1460.803 kb on - strand, within MPMX20_01398at 1460.824 kb on - strand, within MPMX20_01398at 1460.910 kb on + strand, within MPMX20_01398at 1460.910 kb on + strand, within MPMX20_01398at 1460.913 kb on - strand, within MPMX20_01398at 1460.916 kb on - strand, within MPMX20_01398at 1460.941 kb on + strand, within MPMX20_01398at 1460.941 kb on + strand, within MPMX20_01398at 1460.941 kb on + strand, within MPMX20_01398at 1460.941 kb on + strand, within MPMX20_01398at 1460.944 kb on - strand, within MPMX20_01398at 1460.949 kb on - strand, within MPMX20_01398at 1460.949 kb on - strand, within MPMX20_01398at 1460.949 kb on - strand, within MPMX20_01398at 1460.963 kb on + strand, within MPMX20_01398at 1461.035 kb on - strand, within MPMX20_01398at 1461.037 kb on + strand, within MPMX20_01398at 1461.049 kb on - strand, within MPMX20_01398at 1461.060 kb on + strand, within MPMX20_01398at 1461.088 kb on + strand, within MPMX20_01398at 1461.088 kb on + strand, within MPMX20_01398at 1461.088 kb on + strand, within MPMX20_01398at 1461.094 kb on + strand, within MPMX20_01398at 1461.102 kb on - strand, within MPMX20_01398at 1461.103 kb on - strand, within MPMX20_01398at 1461.216 kb on + strand, within MPMX20_01398at 1461.216 kb on + strand, within MPMX20_01398at 1461.226 kb on + strand, within MPMX20_01398at 1461.447 kb on - strandat 1461.447 kb on - strandat 1461.547 kb on - strandat 1461.595 kb on + strandat 1461.595 kb on + strandat 1461.612 kb on - strandat 1461.626 kb on + strandat 1461.734 kb on + strand, within MPMX20_01399at 1461.776 kb on + strand, within MPMX20_01399at 1461.781 kb on + strand, within MPMX20_01399at 1461.783 kb on - strand, within MPMX20_01399at 1461.784 kb on - strand, within MPMX20_01399at 1461.790 kb on - strand, within MPMX20_01399at 1461.791 kb on + strand, within MPMX20_01399at 1461.794 kb on - strand, within MPMX20_01399at 1461.802 kb on + strand, within MPMX20_01399at 1461.897 kb on + strand, within MPMX20_01399at 1461.897 kb on + strand, within MPMX20_01399at 1461.905 kb on - strand, within MPMX20_01399at 1461.905 kb on - strand, within MPMX20_01399at 1461.917 kb on - strand, within MPMX20_01399at 1461.941 kb on - strand, within MPMX20_01399at 1461.949 kb on - strand, within MPMX20_01399at 1461.964 kb on + strand, within MPMX20_01399at 1462.054 kb on - strand, within MPMX20_01399at 1462.233 kb on - strand, within MPMX20_01399at 1462.248 kb on + strand, within MPMX20_01399at 1462.248 kb on + strand, within MPMX20_01399at 1462.248 kb on + strand, within MPMX20_01399at 1462.248 kb on + strand, within MPMX20_01399at 1462.248 kb on + strand, within MPMX20_01399at 1462.256 kb on - strand, within MPMX20_01399

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,459,640 - -2.6
1,459,640 - -3.0
1,459,690 + -2.2
1,459,802 + MPMX20_01397 0.18 -2.1
1,459,818 + MPMX20_01397 0.19 -4.5
1,459,820 - MPMX20_01397 0.20 -3.6
1,459,868 + MPMX20_01397 0.25 -3.7
1,459,890 - MPMX20_01397 0.27 -3.6
1,459,966 + MPMX20_01397 0.35 -4.3
1,459,981 - MPMX20_01397 0.37 -4.2
1,460,047 + MPMX20_01397 0.44 -4.4
1,460,055 - MPMX20_01397 0.45 -3.5
1,460,099 + MPMX20_01397 0.49 -3.4
1,460,099 + MPMX20_01397 0.49 -3.7
1,460,099 + MPMX20_01397 0.49 -2.8
1,460,099 + MPMX20_01397 0.49 -3.0
1,460,107 - MPMX20_01397 0.50 -3.5
1,460,109 + MPMX20_01397 0.50 -3.9
1,460,165 + MPMX20_01397 0.56 -4.0
1,460,168 - MPMX20_01397 0.57 -2.9
1,460,206 - MPMX20_01397 0.61 -1.5
1,460,211 - MPMX20_01397 0.61 -3.2
1,460,268 + MPMX20_01397 0.67 -1.1
1,460,276 - MPMX20_01397 0.68 -5.5
1,460,296 - MPMX20_01397 0.70 -4.5
1,460,305 + MPMX20_01397 0.71 -1.1
1,460,310 + MPMX20_01397 0.72 -5.0
1,460,313 - MPMX20_01397 0.72 -1.3
1,460,348 + MPMX20_01397 0.76 -3.4
1,460,404 + MPMX20_01397 0.82 -2.4
1,460,456 - MPMX20_01397 0.87 -2.5
1,460,523 + -4.8
1,460,562 + -1.1
1,460,575 - +3.2
1,460,586 - +0.2
1,460,586 - +1.4
1,460,713 + MPMX20_01398 0.16 +1.3
1,460,737 + MPMX20_01398 0.19 +0.6
1,460,771 - MPMX20_01398 0.24 +1.9
1,460,803 - MPMX20_01398 0.28 +2.8
1,460,824 - MPMX20_01398 0.31 -0.5
1,460,910 + MPMX20_01398 0.43 +1.4
1,460,910 + MPMX20_01398 0.43 +1.2
1,460,913 - MPMX20_01398 0.43 +1.1
1,460,916 - MPMX20_01398 0.44 +2.3
1,460,941 + MPMX20_01398 0.47 +1.0
1,460,941 + MPMX20_01398 0.47 -1.3
1,460,941 + MPMX20_01398 0.47 +0.5
1,460,941 + MPMX20_01398 0.47 +3.2
1,460,944 - MPMX20_01398 0.48 +3.3
1,460,949 - MPMX20_01398 0.48 +1.6
1,460,949 - MPMX20_01398 0.48 +2.5
1,460,949 - MPMX20_01398 0.48 +2.0
1,460,963 + MPMX20_01398 0.50 -0.9
1,461,035 - MPMX20_01398 0.60 +2.7
1,461,037 + MPMX20_01398 0.60 +0.3
1,461,049 - MPMX20_01398 0.62 +1.7
1,461,060 + MPMX20_01398 0.63 +2.1
1,461,088 + MPMX20_01398 0.67 +1.1
1,461,088 + MPMX20_01398 0.67 -0.5
1,461,088 + MPMX20_01398 0.67 +2.6
1,461,094 + MPMX20_01398 0.68 +1.3
1,461,102 - MPMX20_01398 0.69 +2.7
1,461,103 - MPMX20_01398 0.69 +2.2
1,461,216 + MPMX20_01398 0.85 +0.7
1,461,216 + MPMX20_01398 0.85 +1.3
1,461,226 + MPMX20_01398 0.86 -1.7
1,461,447 - -3.3
1,461,447 - -2.1
1,461,547 - -3.5
1,461,595 + -3.4
1,461,595 + -3.3
1,461,612 - -2.2
1,461,626 + -2.5
1,461,734 + MPMX20_01399 0.16 -3.6
1,461,776 + MPMX20_01399 0.18 -4.6
1,461,781 + MPMX20_01399 0.19 -3.9
1,461,783 - MPMX20_01399 0.19 -3.3
1,461,784 - MPMX20_01399 0.19 -4.3
1,461,790 - MPMX20_01399 0.19 -4.2
1,461,791 + MPMX20_01399 0.19 -4.0
1,461,794 - MPMX20_01399 0.20 +0.1
1,461,802 + MPMX20_01399 0.20 -2.0
1,461,897 + MPMX20_01399 0.26 -3.7
1,461,897 + MPMX20_01399 0.26 -4.7
1,461,905 - MPMX20_01399 0.26 -3.9
1,461,905 - MPMX20_01399 0.26 -1.3
1,461,917 - MPMX20_01399 0.27 -4.6
1,461,941 - MPMX20_01399 0.28 -2.2
1,461,949 - MPMX20_01399 0.29 -3.0
1,461,964 + MPMX20_01399 0.30 -1.7
1,462,054 - MPMX20_01399 0.35 -3.2
1,462,233 - MPMX20_01399 0.46 +0.2
1,462,248 + MPMX20_01399 0.46 -3.0
1,462,248 + MPMX20_01399 0.46 -2.0
1,462,248 + MPMX20_01399 0.46 -2.5
1,462,248 + MPMX20_01399 0.46 -2.3
1,462,248 + MPMX20_01399 0.46 -3.8
1,462,256 - MPMX20_01399 0.47 -4.7

Or see this region's nucleotide sequence