Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01396 and MPMX20_01397 overlap by 4 nucleotides MPMX20_01397 and MPMX20_01398 are separated by 19 nucleotides MPMX20_01398 and MPMX20_01399 are separated by 136 nucleotides
MPMX20_01396: MPMX20_01396 - Imidazolonepropionase, at 1,458,416 to 1,459,639
_01396
MPMX20_01397: MPMX20_01397 - Formimidoylglutamase, at 1,459,636 to 1,460,574
_01397
MPMX20_01398: MPMX20_01398 - HTH-type transcriptional repressor NagR, at 1,460,594 to 1,461,328
_01398
MPMX20_01399: MPMX20_01399 - Urocanate hydratase, at 1,461,465 to 1,463,150
_01399
Position (kb)
1459
1460
1461 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1458.647 kb on - strand, within MPMX20_01396 at 1458.680 kb on - strand, within MPMX20_01396 at 1458.680 kb on - strand, within MPMX20_01396 at 1458.760 kb on - strand, within MPMX20_01396 at 1458.788 kb on + strand, within MPMX20_01396 at 1458.796 kb on - strand, within MPMX20_01396 at 1458.824 kb on - strand, within MPMX20_01396 at 1458.920 kb on + strand, within MPMX20_01396 at 1458.928 kb on - strand, within MPMX20_01396 at 1458.930 kb on + strand, within MPMX20_01396 at 1458.938 kb on - strand, within MPMX20_01396 at 1458.999 kb on + strand, within MPMX20_01396 at 1459.002 kb on - strand, within MPMX20_01396 at 1459.002 kb on - strand, within MPMX20_01396 at 1459.012 kb on + strand, within MPMX20_01396 at 1459.012 kb on + strand, within MPMX20_01396 at 1459.063 kb on - strand, within MPMX20_01396 at 1459.078 kb on - strand, within MPMX20_01396 at 1459.121 kb on + strand, within MPMX20_01396 at 1459.129 kb on - strand, within MPMX20_01396 at 1459.186 kb on - strand, within MPMX20_01396 at 1459.209 kb on - strand, within MPMX20_01396 at 1459.247 kb on - strand, within MPMX20_01396 at 1459.261 kb on + strand, within MPMX20_01396 at 1459.310 kb on + strand, within MPMX20_01396 at 1459.341 kb on - strand, within MPMX20_01396 at 1459.380 kb on - strand, within MPMX20_01396 at 1459.426 kb on - strand, within MPMX20_01396 at 1459.426 kb on - strand, within MPMX20_01396 at 1459.464 kb on - strand, within MPMX20_01396 at 1459.466 kb on + strand, within MPMX20_01396 at 1459.469 kb on - strand, within MPMX20_01396 at 1459.503 kb on + strand, within MPMX20_01396 at 1459.533 kb on - strand at 1459.533 kb on - strand at 1459.640 kb on - strand at 1459.640 kb on - strand at 1459.690 kb on + strand at 1459.802 kb on + strand, within MPMX20_01397 at 1459.818 kb on + strand, within MPMX20_01397 at 1459.820 kb on - strand, within MPMX20_01397 at 1459.868 kb on + strand, within MPMX20_01397 at 1459.890 kb on - strand, within MPMX20_01397 at 1459.966 kb on + strand, within MPMX20_01397 at 1459.981 kb on - strand, within MPMX20_01397 at 1460.047 kb on + strand, within MPMX20_01397 at 1460.055 kb on - strand, within MPMX20_01397 at 1460.099 kb on + strand, within MPMX20_01397 at 1460.099 kb on + strand, within MPMX20_01397 at 1460.099 kb on + strand, within MPMX20_01397 at 1460.099 kb on + strand, within MPMX20_01397 at 1460.107 kb on - strand, within MPMX20_01397 at 1460.109 kb on + strand, within MPMX20_01397 at 1460.165 kb on + strand, within MPMX20_01397 at 1460.168 kb on - strand, within MPMX20_01397 at 1460.206 kb on - strand, within MPMX20_01397 at 1460.211 kb on - strand, within MPMX20_01397 at 1460.268 kb on + strand, within MPMX20_01397 at 1460.276 kb on - strand, within MPMX20_01397 at 1460.296 kb on - strand, within MPMX20_01397 at 1460.305 kb on + strand, within MPMX20_01397 at 1460.310 kb on + strand, within MPMX20_01397 at 1460.313 kb on - strand, within MPMX20_01397 at 1460.348 kb on + strand, within MPMX20_01397 at 1460.404 kb on + strand, within MPMX20_01397 at 1460.456 kb on - strand, within MPMX20_01397 at 1460.523 kb on + strand at 1460.562 kb on + strand at 1460.575 kb on - strand at 1460.586 kb on - strand at 1460.586 kb on - strand at 1460.713 kb on + strand, within MPMX20_01398 at 1460.737 kb on + strand, within MPMX20_01398 at 1460.771 kb on - strand, within MPMX20_01398 at 1460.803 kb on - strand, within MPMX20_01398 at 1460.824 kb on - strand, within MPMX20_01398 at 1460.910 kb on + strand, within MPMX20_01398 at 1460.910 kb on + strand, within MPMX20_01398 at 1460.913 kb on - strand, within MPMX20_01398 at 1460.916 kb on - strand, within MPMX20_01398 at 1460.941 kb on + strand, within MPMX20_01398 at 1460.941 kb on + strand, within MPMX20_01398 at 1460.941 kb on + strand, within MPMX20_01398 at 1460.941 kb on + strand, within MPMX20_01398 at 1460.944 kb on - strand, within MPMX20_01398 at 1460.949 kb on - strand, within MPMX20_01398 at 1460.949 kb on - strand, within MPMX20_01398 at 1460.949 kb on - strand, within MPMX20_01398 at 1460.963 kb on + strand, within MPMX20_01398 at 1461.035 kb on - strand, within MPMX20_01398 at 1461.037 kb on + strand, within MPMX20_01398 at 1461.049 kb on - strand, within MPMX20_01398 at 1461.060 kb on + strand, within MPMX20_01398 at 1461.088 kb on + strand, within MPMX20_01398 at 1461.088 kb on + strand, within MPMX20_01398 at 1461.088 kb on + strand, within MPMX20_01398 at 1461.094 kb on + strand, within MPMX20_01398 at 1461.102 kb on - strand, within MPMX20_01398 at 1461.103 kb on - strand, within MPMX20_01398 at 1461.216 kb on + strand, within MPMX20_01398 at 1461.216 kb on + strand, within MPMX20_01398 at 1461.226 kb on + strand, within MPMX20_01398 at 1461.447 kb on - strand at 1461.447 kb on - strand at 1461.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,458,647 - MPMX20_01396 0.19 -3.8 1,458,680 - MPMX20_01396 0.22 -3.1 1,458,680 - MPMX20_01396 0.22 -1.7 1,458,760 - MPMX20_01396 0.28 -4.0 1,458,788 + MPMX20_01396 0.30 -4.8 1,458,796 - MPMX20_01396 0.31 -0.5 1,458,824 - MPMX20_01396 0.33 -3.6 1,458,920 + MPMX20_01396 0.41 -3.7 1,458,928 - MPMX20_01396 0.42 -1.5 1,458,930 + MPMX20_01396 0.42 -2.1 1,458,938 - MPMX20_01396 0.43 -3.6 1,458,999 + MPMX20_01396 0.48 -1.5 1,459,002 - MPMX20_01396 0.48 -5.2 1,459,002 - MPMX20_01396 0.48 -3.2 1,459,012 + MPMX20_01396 0.49 -3.8 1,459,012 + MPMX20_01396 0.49 -2.7 1,459,063 - MPMX20_01396 0.53 -2.3 1,459,078 - MPMX20_01396 0.54 -5.4 1,459,121 + MPMX20_01396 0.58 -3.1 1,459,129 - MPMX20_01396 0.58 -2.4 1,459,186 - MPMX20_01396 0.63 -2.9 1,459,209 - MPMX20_01396 0.65 -2.2 1,459,247 - MPMX20_01396 0.68 -3.4 1,459,261 + MPMX20_01396 0.69 -1.7 1,459,310 + MPMX20_01396 0.73 -3.5 1,459,341 - MPMX20_01396 0.76 -2.0 1,459,380 - MPMX20_01396 0.79 -2.2 1,459,426 - MPMX20_01396 0.83 -4.7 1,459,426 - MPMX20_01396 0.83 -3.3 1,459,464 - MPMX20_01396 0.86 -3.2 1,459,466 + MPMX20_01396 0.86 -1.7 1,459,469 - MPMX20_01396 0.86 -3.5 1,459,503 + MPMX20_01396 0.89 -3.3 1,459,533 - -1.5 1,459,533 - -2.8 1,459,640 - -2.6 1,459,640 - -3.0 1,459,690 + -2.2 1,459,802 + MPMX20_01397 0.18 -2.1 1,459,818 + MPMX20_01397 0.19 -4.5 1,459,820 - MPMX20_01397 0.20 -3.6 1,459,868 + MPMX20_01397 0.25 -3.7 1,459,890 - MPMX20_01397 0.27 -3.6 1,459,966 + MPMX20_01397 0.35 -4.3 1,459,981 - MPMX20_01397 0.37 -4.2 1,460,047 + MPMX20_01397 0.44 -4.4 1,460,055 - MPMX20_01397 0.45 -3.5 1,460,099 + MPMX20_01397 0.49 -3.4 1,460,099 + MPMX20_01397 0.49 -3.7 1,460,099 + MPMX20_01397 0.49 -2.8 1,460,099 + MPMX20_01397 0.49 -3.0 1,460,107 - MPMX20_01397 0.50 -3.5 1,460,109 + MPMX20_01397 0.50 -3.9 1,460,165 + MPMX20_01397 0.56 -4.0 1,460,168 - MPMX20_01397 0.57 -2.9 1,460,206 - MPMX20_01397 0.61 -1.5 1,460,211 - MPMX20_01397 0.61 -3.2 1,460,268 + MPMX20_01397 0.67 -1.1 1,460,276 - MPMX20_01397 0.68 -5.5 1,460,296 - MPMX20_01397 0.70 -4.5 1,460,305 + MPMX20_01397 0.71 -1.1 1,460,310 + MPMX20_01397 0.72 -5.0 1,460,313 - MPMX20_01397 0.72 -1.3 1,460,348 + MPMX20_01397 0.76 -3.4 1,460,404 + MPMX20_01397 0.82 -2.4 1,460,456 - MPMX20_01397 0.87 -2.5 1,460,523 + -4.8 1,460,562 + -1.1 1,460,575 - +3.2 1,460,586 - +0.2 1,460,586 - +1.4 1,460,713 + MPMX20_01398 0.16 +1.3 1,460,737 + MPMX20_01398 0.19 +0.6 1,460,771 - MPMX20_01398 0.24 +1.9 1,460,803 - MPMX20_01398 0.28 +2.8 1,460,824 - MPMX20_01398 0.31 -0.5 1,460,910 + MPMX20_01398 0.43 +1.4 1,460,910 + MPMX20_01398 0.43 +1.2 1,460,913 - MPMX20_01398 0.43 +1.1 1,460,916 - MPMX20_01398 0.44 +2.3 1,460,941 + MPMX20_01398 0.47 +1.0 1,460,941 + MPMX20_01398 0.47 -1.3 1,460,941 + MPMX20_01398 0.47 +0.5 1,460,941 + MPMX20_01398 0.47 +3.2 1,460,944 - MPMX20_01398 0.48 +3.3 1,460,949 - MPMX20_01398 0.48 +1.6 1,460,949 - MPMX20_01398 0.48 +2.5 1,460,949 - MPMX20_01398 0.48 +2.0 1,460,963 + MPMX20_01398 0.50 -0.9 1,461,035 - MPMX20_01398 0.60 +2.7 1,461,037 + MPMX20_01398 0.60 +0.3 1,461,049 - MPMX20_01398 0.62 +1.7 1,461,060 + MPMX20_01398 0.63 +2.1 1,461,088 + MPMX20_01398 0.67 +1.1 1,461,088 + MPMX20_01398 0.67 -0.5 1,461,088 + MPMX20_01398 0.67 +2.6 1,461,094 + MPMX20_01398 0.68 +1.3 1,461,102 - MPMX20_01398 0.69 +2.7 1,461,103 - MPMX20_01398 0.69 +2.2 1,461,216 + MPMX20_01398 0.85 +0.7 1,461,216 + MPMX20_01398 0.85 +1.3 1,461,226 + MPMX20_01398 0.86 -1.7 1,461,447 - -3.3 1,461,447 - -2.1 1,461,547 - -3.5
Or see this region's nucleotide sequence