Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03770

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03768 and MPMX20_03769 are separated by 161 nucleotidesMPMX20_03769 and MPMX20_03770 are separated by 250 nucleotidesMPMX20_03770 and MPMX20_03771 are separated by 45 nucleotides MPMX20_03768: MPMX20_03768 - hypothetical protein, at 3,971,932 to 3,972,516 _03768 MPMX20_03769: MPMX20_03769 - Cell division protein ZapA, at 3,972,678 to 3,973,007 _03769 MPMX20_03770: MPMX20_03770 - 5-formyltetrahydrofolate cyclo-ligase, at 3,973,258 to 3,973,854 _03770 MPMX20_03771: MPMX20_03771 - D-3-phosphoglycerate dehydrogenase, at 3,973,900 to 3,975,132 _03771 Position (kb) 3973 3974Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3972.311 kb on + strand, within MPMX20_03768at 3972.311 kb on + strand, within MPMX20_03768at 3972.311 kb on + strand, within MPMX20_03768at 3972.319 kb on - strand, within MPMX20_03768at 3972.319 kb on - strand, within MPMX20_03768at 3972.344 kb on + strand, within MPMX20_03768at 3972.407 kb on + strand, within MPMX20_03768at 3972.407 kb on + strand, within MPMX20_03768at 3972.408 kb on - strand, within MPMX20_03768at 3972.436 kb on + strand, within MPMX20_03768at 3972.436 kb on + strand, within MPMX20_03768at 3972.444 kb on - strand, within MPMX20_03768at 3972.444 kb on - strand, within MPMX20_03768at 3972.444 kb on - strand, within MPMX20_03768at 3972.444 kb on - strand, within MPMX20_03768at 3972.444 kb on - strand, within MPMX20_03768at 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.501 kb on + strandat 3972.509 kb on - strandat 3972.509 kb on - strandat 3972.509 kb on - strandat 3972.509 kb on - strandat 3972.509 kb on - strandat 3972.509 kb on - strandat 3972.509 kb on - strandat 3972.566 kb on + strandat 3972.583 kb on + strandat 3972.604 kb on - strandat 3972.638 kb on - strandat 3972.650 kb on - strandat 3972.655 kb on + strandat 3972.672 kb on + strandat 3972.673 kb on - strandat 3972.692 kb on - strandat 3972.749 kb on - strand, within MPMX20_03769at 3972.862 kb on + strand, within MPMX20_03769at 3972.910 kb on + strand, within MPMX20_03769at 3972.910 kb on + strand, within MPMX20_03769at 3972.918 kb on - strand, within MPMX20_03769at 3972.918 kb on - strand, within MPMX20_03769at 3972.953 kb on + strand, within MPMX20_03769at 3972.961 kb on - strand, within MPMX20_03769at 3973.088 kb on - strandat 3973.207 kb on - strandat 3973.342 kb on - strand, within MPMX20_03770at 3973.388 kb on + strand, within MPMX20_03770at 3973.417 kb on + strand, within MPMX20_03770at 3973.470 kb on + strand, within MPMX20_03770at 3973.547 kb on + strand, within MPMX20_03770at 3973.547 kb on + strand, within MPMX20_03770at 3973.555 kb on - strand, within MPMX20_03770at 3973.557 kb on - strand, within MPMX20_03770at 3973.639 kb on + strand, within MPMX20_03770at 3973.762 kb on + strand, within MPMX20_03770at 3973.767 kb on + strand, within MPMX20_03770at 3973.841 kb on - strandat 3973.885 kb on - strandat 3973.885 kb on - strandat 3973.916 kb on - strandat 3973.935 kb on - strandat 3973.938 kb on + strandat 3973.946 kb on - strandat 3973.977 kb on - strandat 3974.003 kb on - strandat 3974.006 kb on + strandat 3974.014 kb on - strandat 3974.103 kb on - strand, within MPMX20_03771at 3974.134 kb on - strand, within MPMX20_03771at 3974.177 kb on - strand, within MPMX20_03771at 3974.177 kb on - strand, within MPMX20_03771at 3974.222 kb on + strand, within MPMX20_03771at 3974.292 kb on + strand, within MPMX20_03771at 3974.292 kb on + strand, within MPMX20_03771at 3974.300 kb on - strand, within MPMX20_03771at 3974.300 kb on - strand, within MPMX20_03771at 3974.307 kb on - strand, within MPMX20_03771at 3974.331 kb on - strand, within MPMX20_03771at 3974.396 kb on - strand, within MPMX20_03771at 3974.449 kb on - strand, within MPMX20_03771at 3974.454 kb on - strand, within MPMX20_03771at 3974.460 kb on + strand, within MPMX20_03771at 3974.510 kb on - strand, within MPMX20_03771at 3974.510 kb on - strand, within MPMX20_03771at 3974.535 kb on + strand, within MPMX20_03771at 3974.543 kb on - strand, within MPMX20_03771at 3974.545 kb on + strand, within MPMX20_03771at 3974.561 kb on + strand, within MPMX20_03771at 3974.561 kb on + strand, within MPMX20_03771at 3974.561 kb on + strand, within MPMX20_03771at 3974.642 kb on + strand, within MPMX20_03771at 3974.652 kb on + strand, within MPMX20_03771at 3974.785 kb on + strand, within MPMX20_03771at 3974.793 kb on - strand, within MPMX20_03771at 3974.832 kb on - strand, within MPMX20_03771

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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3,972,311 + MPMX20_03768 0.65 -0.9
3,972,311 + MPMX20_03768 0.65 +0.2
3,972,311 + MPMX20_03768 0.65 -1.1
3,972,319 - MPMX20_03768 0.66 -1.8
3,972,319 - MPMX20_03768 0.66 -1.8
3,972,344 + MPMX20_03768 0.70 +1.8
3,972,407 + MPMX20_03768 0.81 -1.6
3,972,407 + MPMX20_03768 0.81 -1.3
3,972,408 - MPMX20_03768 0.81 +0.5
3,972,436 + MPMX20_03768 0.86 -0.4
3,972,436 + MPMX20_03768 0.86 -2.3
3,972,444 - MPMX20_03768 0.88 +0.7
3,972,444 - MPMX20_03768 0.88 -1.2
3,972,444 - MPMX20_03768 0.88 -1.8
3,972,444 - MPMX20_03768 0.88 +0.5
3,972,444 - MPMX20_03768 0.88 +0.4
3,972,501 + +0.9
3,972,501 + -0.9
3,972,501 + -1.3
3,972,501 + -2.9
3,972,501 + -0.6
3,972,501 + +1.3
3,972,501 + -1.2
3,972,501 + +0.2
3,972,501 + -1.4
3,972,501 + +0.6
3,972,501 + -0.4
3,972,501 + -0.6
3,972,501 + +0.4
3,972,501 + +0.6
3,972,501 + +1.9
3,972,501 + +0.4
3,972,501 + +0.8
3,972,509 - +0.6
3,972,509 - +0.2
3,972,509 - +1.1
3,972,509 - +2.8
3,972,509 - +0.2
3,972,509 - -0.4
3,972,509 - -0.1
3,972,566 + +0.0
3,972,583 + +2.4
3,972,604 - +1.9
3,972,638 - -0.9
3,972,650 - -1.2
3,972,655 + -1.1
3,972,672 + +0.3
3,972,673 - +1.2
3,972,692 - +0.4
3,972,749 - MPMX20_03769 0.22 +0.6
3,972,862 + MPMX20_03769 0.56 +0.9
3,972,910 + MPMX20_03769 0.70 +0.8
3,972,910 + MPMX20_03769 0.70 -0.6
3,972,918 - MPMX20_03769 0.73 -0.8
3,972,918 - MPMX20_03769 0.73 -0.6
3,972,953 + MPMX20_03769 0.83 +2.2
3,972,961 - MPMX20_03769 0.86 -0.7
3,973,088 - +1.0
3,973,207 - +0.4
3,973,342 - MPMX20_03770 0.14 -3.3
3,973,388 + MPMX20_03770 0.22 -1.9
3,973,417 + MPMX20_03770 0.27 +0.3
3,973,470 + MPMX20_03770 0.36 -0.9
3,973,547 + MPMX20_03770 0.48 -3.4
3,973,547 + MPMX20_03770 0.48 -1.2
3,973,555 - MPMX20_03770 0.50 -3.1
3,973,557 - MPMX20_03770 0.50 -0.9
3,973,639 + MPMX20_03770 0.64 +1.6
3,973,762 + MPMX20_03770 0.84 -0.9
3,973,767 + MPMX20_03770 0.85 -1.5
3,973,841 - -1.1
3,973,885 - -2.6
3,973,885 - +0.1
3,973,916 - -1.4
3,973,935 - -1.6
3,973,938 + -4.0
3,973,946 - -2.1
3,973,977 - -3.1
3,974,003 - -3.3
3,974,006 + -0.4
3,974,014 - -4.6
3,974,103 - MPMX20_03771 0.16 -4.8
3,974,134 - MPMX20_03771 0.19 -3.6
3,974,177 - MPMX20_03771 0.22 -4.0
3,974,177 - MPMX20_03771 0.22 -3.3
3,974,222 + MPMX20_03771 0.26 -3.8
3,974,292 + MPMX20_03771 0.32 -1.2
3,974,292 + MPMX20_03771 0.32 -2.8
3,974,300 - MPMX20_03771 0.32 -4.9
3,974,300 - MPMX20_03771 0.32 -2.5
3,974,307 - MPMX20_03771 0.33 -3.2
3,974,331 - MPMX20_03771 0.35 -0.8
3,974,396 - MPMX20_03771 0.40 -2.6
3,974,449 - MPMX20_03771 0.45 -3.0
3,974,454 - MPMX20_03771 0.45 -3.0
3,974,460 + MPMX20_03771 0.45 -2.2
3,974,510 - MPMX20_03771 0.49 -0.9
3,974,510 - MPMX20_03771 0.49 -1.4
3,974,535 + MPMX20_03771 0.52 -0.3
3,974,543 - MPMX20_03771 0.52 -1.5
3,974,545 + MPMX20_03771 0.52 -4.8
3,974,561 + MPMX20_03771 0.54 -5.0
3,974,561 + MPMX20_03771 0.54 -3.2
3,974,561 + MPMX20_03771 0.54 -1.1
3,974,642 + MPMX20_03771 0.60 -0.9
3,974,652 + MPMX20_03771 0.61 -3.3
3,974,785 + MPMX20_03771 0.72 -2.9
3,974,793 - MPMX20_03771 0.72 -4.3
3,974,832 - MPMX20_03771 0.76 -4.2

Or see this region's nucleotide sequence