Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03460

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03458 and MPMX20_03459 are separated by 194 nucleotidesMPMX20_03459 and MPMX20_03460 are separated by 86 nucleotidesMPMX20_03460 and MPMX20_03461 are separated by 431 nucleotides MPMX20_03458: MPMX20_03458 - 23S ribosomal RNA, at 3,646,163 to 3,649,065 _03458 MPMX20_03459: MPMX20_03459 - tRNA-Glu, at 3,649,260 to 3,649,335 _03459 MPMX20_03460: MPMX20_03460 - 16S ribosomal RNA, at 3,649,422 to 3,650,957 _03460 MPMX20_03461: MPMX20_03461 - Chaperone protein ClpB, at 3,651,389 to 3,653,962 _03461 Position (kb) 3649 3650 3651Strain fitness (log2 ratio) -1 0 1 2 3at 3651.226 kb on + strandat 3651.331 kb on - strandat 3651.459 kb on - strandat 3651.533 kb on - strandat 3651.552 kb on - strandat 3651.602 kb on + strandat 3651.609 kb on + strandat 3651.617 kb on - strandat 3651.617 kb on - strandat 3651.628 kb on + strandat 3651.670 kb on - strand, within MPMX20_03461at 3651.677 kb on - strand, within MPMX20_03461at 3651.679 kb on + strand, within MPMX20_03461at 3651.718 kb on + strand, within MPMX20_03461at 3651.735 kb on + strand, within MPMX20_03461at 3651.743 kb on - strand, within MPMX20_03461at 3651.772 kb on - strand, within MPMX20_03461at 3651.805 kb on + strand, within MPMX20_03461at 3651.851 kb on + strand, within MPMX20_03461at 3651.940 kb on + strand, within MPMX20_03461

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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3,651,226 + -0.0
3,651,331 - -0.7
3,651,459 - -0.4
3,651,533 - +0.6
3,651,552 - -0.4
3,651,602 + +0.2
3,651,609 + +2.7
3,651,617 - +2.2
3,651,617 - +1.6
3,651,628 + -0.2
3,651,670 - MPMX20_03461 0.11 -1.0
3,651,677 - MPMX20_03461 0.11 +0.3
3,651,679 + MPMX20_03461 0.11 +0.1
3,651,718 + MPMX20_03461 0.13 -1.1
3,651,735 + MPMX20_03461 0.13 -0.4
3,651,743 - MPMX20_03461 0.14 -0.1
3,651,772 - MPMX20_03461 0.15 -1.4
3,651,805 + MPMX20_03461 0.16 -0.6
3,651,851 + MPMX20_03461 0.18 -0.1
3,651,940 + MPMX20_03461 0.21 +2.8

Or see this region's nucleotide sequence