Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00893

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00892 and MPMX20_00893 are separated by 104 nucleotidesMPMX20_00893 and MPMX20_00894 are separated by 112 nucleotides MPMX20_00892: MPMX20_00892 - HTH-type transcriptional regulator DmlR, at 940,503 to 941,408 _00892 MPMX20_00893: MPMX20_00893 - Inner membrane transport protein YdhP, at 941,513 to 942,688 _00893 MPMX20_00894: MPMX20_00894 - hypothetical protein, at 942,801 to 943,625 _00894 Position (kb) 941 942 943Strain fitness (log2 ratio) -2 -1 0 1 2at 940.582 kb on - strandat 940.598 kb on - strand, within MPMX20_00892at 940.622 kb on - strand, within MPMX20_00892at 940.686 kb on - strand, within MPMX20_00892at 940.725 kb on - strand, within MPMX20_00892at 940.725 kb on - strand, within MPMX20_00892at 940.746 kb on + strand, within MPMX20_00892at 940.760 kb on - strand, within MPMX20_00892at 940.801 kb on + strand, within MPMX20_00892at 940.809 kb on - strand, within MPMX20_00892at 940.809 kb on - strand, within MPMX20_00892at 940.833 kb on + strand, within MPMX20_00892at 940.841 kb on - strand, within MPMX20_00892at 940.845 kb on - strand, within MPMX20_00892at 940.883 kb on + strand, within MPMX20_00892at 940.893 kb on + strand, within MPMX20_00892at 941.045 kb on + strand, within MPMX20_00892at 941.068 kb on + strand, within MPMX20_00892at 941.076 kb on - strand, within MPMX20_00892at 941.149 kb on - strand, within MPMX20_00892at 941.264 kb on + strand, within MPMX20_00892at 941.408 kb on + strandat 941.467 kb on + strandat 941.475 kb on - strandat 941.577 kb on + strandat 941.588 kb on - strandat 941.590 kb on - strandat 941.623 kb on + strandat 941.626 kb on - strandat 941.631 kb on - strand, within MPMX20_00893at 941.631 kb on - strand, within MPMX20_00893at 941.676 kb on + strand, within MPMX20_00893at 941.746 kb on - strand, within MPMX20_00893at 941.759 kb on + strand, within MPMX20_00893at 941.764 kb on + strand, within MPMX20_00893at 941.779 kb on + strand, within MPMX20_00893at 941.779 kb on + strand, within MPMX20_00893at 941.779 kb on + strand, within MPMX20_00893at 941.782 kb on - strand, within MPMX20_00893at 941.792 kb on - strand, within MPMX20_00893at 941.792 kb on - strand, within MPMX20_00893at 941.812 kb on + strand, within MPMX20_00893at 941.821 kb on + strand, within MPMX20_00893at 941.841 kb on - strand, within MPMX20_00893at 941.863 kb on - strand, within MPMX20_00893at 941.877 kb on - strand, within MPMX20_00893at 941.963 kb on + strand, within MPMX20_00893at 942.038 kb on + strand, within MPMX20_00893at 942.064 kb on + strand, within MPMX20_00893at 942.072 kb on + strand, within MPMX20_00893at 942.091 kb on + strand, within MPMX20_00893at 942.099 kb on - strand, within MPMX20_00893at 942.099 kb on - strand, within MPMX20_00893at 942.106 kb on - strand, within MPMX20_00893at 942.107 kb on + strand, within MPMX20_00893at 942.147 kb on + strand, within MPMX20_00893at 942.148 kb on - strand, within MPMX20_00893at 942.251 kb on - strand, within MPMX20_00893at 942.303 kb on + strand, within MPMX20_00893at 942.322 kb on - strand, within MPMX20_00893at 942.335 kb on + strand, within MPMX20_00893at 942.394 kb on + strand, within MPMX20_00893at 942.407 kb on - strand, within MPMX20_00893at 942.435 kb on + strand, within MPMX20_00893at 942.442 kb on - strand, within MPMX20_00893at 942.456 kb on - strand, within MPMX20_00893at 942.552 kb on - strand, within MPMX20_00893at 942.589 kb on - strandat 942.696 kb on - strandat 942.769 kb on + strandat 942.769 kb on + strandat 942.777 kb on - strandat 942.804 kb on - strandat 942.856 kb on - strandat 942.886 kb on - strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.974 kb on - strand, within MPMX20_00894at 943.033 kb on + strand, within MPMX20_00894at 943.066 kb on + strand, within MPMX20_00894at 943.074 kb on - strand, within MPMX20_00894at 943.076 kb on + strand, within MPMX20_00894at 943.081 kb on + strand, within MPMX20_00894at 943.089 kb on - strand, within MPMX20_00894at 943.154 kb on + strand, within MPMX20_00894at 943.238 kb on + strand, within MPMX20_00894at 943.308 kb on - strand, within MPMX20_00894at 943.308 kb on - strand, within MPMX20_00894at 943.320 kb on - strand, within MPMX20_00894at 943.325 kb on - strand, within MPMX20_00894at 943.325 kb on - strand, within MPMX20_00894at 943.401 kb on + strand, within MPMX20_00894at 943.549 kb on + strandat 943.607 kb on + strandat 943.647 kb on + strandat 943.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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940,582 - -0.1
940,598 - MPMX20_00892 0.10 +1.0
940,622 - MPMX20_00892 0.13 +0.7
940,686 - MPMX20_00892 0.20 -0.4
940,725 - MPMX20_00892 0.25 +0.7
940,725 - MPMX20_00892 0.25 -0.2
940,746 + MPMX20_00892 0.27 -0.4
940,760 - MPMX20_00892 0.28 -1.2
940,801 + MPMX20_00892 0.33 +0.8
940,809 - MPMX20_00892 0.34 -0.8
940,809 - MPMX20_00892 0.34 -0.5
940,833 + MPMX20_00892 0.36 -0.1
940,841 - MPMX20_00892 0.37 +0.3
940,845 - MPMX20_00892 0.38 -0.9
940,883 + MPMX20_00892 0.42 +0.1
940,893 + MPMX20_00892 0.43 +0.1
941,045 + MPMX20_00892 0.60 -0.9
941,068 + MPMX20_00892 0.62 +0.2
941,076 - MPMX20_00892 0.63 -1.1
941,149 - MPMX20_00892 0.71 +0.0
941,264 + MPMX20_00892 0.84 -0.1
941,408 + -1.5
941,467 + -0.5
941,475 - +0.7
941,577 + -2.3
941,588 - +0.3
941,590 - +0.2
941,623 + +0.5
941,626 - -0.4
941,631 - MPMX20_00893 0.10 +1.0
941,631 - MPMX20_00893 0.10 -0.0
941,676 + MPMX20_00893 0.14 +2.5
941,746 - MPMX20_00893 0.20 +0.2
941,759 + MPMX20_00893 0.21 +0.3
941,764 + MPMX20_00893 0.21 +0.2
941,779 + MPMX20_00893 0.23 -0.5
941,779 + MPMX20_00893 0.23 +0.7
941,779 + MPMX20_00893 0.23 +0.3
941,782 - MPMX20_00893 0.23 +0.3
941,792 - MPMX20_00893 0.24 +0.6
941,792 - MPMX20_00893 0.24 +0.4
941,812 + MPMX20_00893 0.25 -0.2
941,821 + MPMX20_00893 0.26 +0.8
941,841 - MPMX20_00893 0.28 -0.1
941,863 - MPMX20_00893 0.30 +1.0
941,877 - MPMX20_00893 0.31 +0.1
941,963 + MPMX20_00893 0.38 +1.4
942,038 + MPMX20_00893 0.45 +0.8
942,064 + MPMX20_00893 0.47 +1.0
942,072 + MPMX20_00893 0.48 +0.1
942,091 + MPMX20_00893 0.49 -0.5
942,099 - MPMX20_00893 0.50 -0.7
942,099 - MPMX20_00893 0.50 +1.8
942,106 - MPMX20_00893 0.50 -0.1
942,107 + MPMX20_00893 0.51 +0.4
942,147 + MPMX20_00893 0.54 -1.1
942,148 - MPMX20_00893 0.54 +0.1
942,251 - MPMX20_00893 0.63 +1.1
942,303 + MPMX20_00893 0.67 -0.3
942,322 - MPMX20_00893 0.69 +1.5
942,335 + MPMX20_00893 0.70 +0.6
942,394 + MPMX20_00893 0.75 -0.4
942,407 - MPMX20_00893 0.76 +0.4
942,435 + MPMX20_00893 0.78 -0.2
942,442 - MPMX20_00893 0.79 +0.4
942,456 - MPMX20_00893 0.80 +0.3
942,552 - MPMX20_00893 0.88 +0.8
942,589 - -0.1
942,696 - -0.4
942,769 + -0.3
942,769 + +1.0
942,777 - +0.4
942,804 - -0.4
942,856 - +0.5
942,886 - MPMX20_00894 0.10 +0.1
942,933 + MPMX20_00894 0.16 -1.4
942,933 + MPMX20_00894 0.16 -0.7
942,933 + MPMX20_00894 0.16 -0.6
942,933 + MPMX20_00894 0.16 +0.0
942,933 + MPMX20_00894 0.16 +1.4
942,933 + MPMX20_00894 0.16 -2.3
942,933 + MPMX20_00894 0.16 -1.1
942,933 + MPMX20_00894 0.16 -0.9
942,933 + MPMX20_00894 0.16 +2.3
942,933 + MPMX20_00894 0.16 -1.9
942,933 + MPMX20_00894 0.16 -0.4
942,933 + MPMX20_00894 0.16 +0.7
942,933 + MPMX20_00894 0.16 -0.3
942,941 - MPMX20_00894 0.17 -0.8
942,941 - MPMX20_00894 0.17 +0.3
942,941 - MPMX20_00894 0.17 -0.8
942,941 - MPMX20_00894 0.17 +0.2
942,941 - MPMX20_00894 0.17 -0.6
942,941 - MPMX20_00894 0.17 +0.4
942,941 - MPMX20_00894 0.17 -2.3
942,941 - MPMX20_00894 0.17 -0.6
942,941 - MPMX20_00894 0.17 +0.0
942,941 - MPMX20_00894 0.17 -0.3
942,941 - MPMX20_00894 0.17 -1.4
942,941 - MPMX20_00894 0.17 -0.8
942,974 - MPMX20_00894 0.21 -0.1
943,033 + MPMX20_00894 0.28 +0.2
943,066 + MPMX20_00894 0.32 -0.5
943,074 - MPMX20_00894 0.33 -0.6
943,076 + MPMX20_00894 0.33 -0.8
943,081 + MPMX20_00894 0.34 -1.6
943,089 - MPMX20_00894 0.35 -0.5
943,154 + MPMX20_00894 0.43 +1.4
943,238 + MPMX20_00894 0.53 -0.7
943,308 - MPMX20_00894 0.61 -2.0
943,308 - MPMX20_00894 0.61 -1.2
943,320 - MPMX20_00894 0.63 -0.4
943,325 - MPMX20_00894 0.64 -0.6
943,325 - MPMX20_00894 0.64 +0.2
943,401 + MPMX20_00894 0.73 -0.7
943,549 + -0.6
943,607 + -0.7
943,647 + -0.1
943,649 - +1.5

Or see this region's nucleotide sequence