Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03561 and MPMX20_03562 are separated by 314 nucleotides MPMX20_03562 and MPMX20_03563 are separated by 127 nucleotides
MPMX20_03561: MPMX20_03561 - putative transporter, at 3,754,297 to 3,755,481
_03561
MPMX20_03562: MPMX20_03562 - Transcriptional repressor MprA, at 3,755,796 to 3,756,326
_03562
MPMX20_03563: MPMX20_03563 - Multidrug export protein EmrA, at 3,756,454 to 3,757,626
_03563
Position (kb)
3755
3756
3757 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3754.829 kb on + strand, within MPMX20_03561 at 3754.914 kb on + strand, within MPMX20_03561 at 3754.914 kb on + strand, within MPMX20_03561 at 3754.922 kb on - strand, within MPMX20_03561 at 3754.948 kb on + strand, within MPMX20_03561 at 3754.991 kb on + strand, within MPMX20_03561 at 3754.999 kb on - strand, within MPMX20_03561 at 3755.056 kb on + strand, within MPMX20_03561 at 3755.171 kb on - strand, within MPMX20_03561 at 3755.171 kb on - strand, within MPMX20_03561 at 3755.171 kb on - strand, within MPMX20_03561 at 3755.180 kb on + strand, within MPMX20_03561 at 3755.187 kb on + strand, within MPMX20_03561 at 3755.200 kb on - strand, within MPMX20_03561 at 3755.208 kb on + strand, within MPMX20_03561 at 3755.239 kb on - strand, within MPMX20_03561 at 3755.248 kb on + strand, within MPMX20_03561 at 3755.269 kb on + strand, within MPMX20_03561 at 3755.271 kb on + strand, within MPMX20_03561 at 3755.293 kb on - strand, within MPMX20_03561 at 3755.371 kb on + strand at 3755.398 kb on - strand at 3755.398 kb on - strand at 3755.400 kb on + strand at 3755.482 kb on + strand at 3755.490 kb on - strand at 3755.501 kb on + strand at 3755.501 kb on + strand at 3755.511 kb on - strand at 3755.517 kb on - strand at 3755.517 kb on - strand at 3755.519 kb on - strand at 3755.527 kb on - strand at 3755.531 kb on + strand at 3755.599 kb on - strand at 3755.599 kb on - strand at 3755.601 kb on + strand at 3755.609 kb on - strand at 3755.624 kb on - strand at 3755.636 kb on - strand at 3755.644 kb on - strand at 3755.644 kb on - strand at 3755.657 kb on + strand at 3755.657 kb on + strand at 3755.667 kb on - strand at 3755.674 kb on + strand at 3755.676 kb on - strand at 3755.697 kb on - strand at 3755.697 kb on - strand at 3755.722 kb on - strand at 3755.784 kb on + strand at 3755.891 kb on + strand, within MPMX20_03562 at 3755.943 kb on + strand, within MPMX20_03562 at 3755.950 kb on + strand, within MPMX20_03562 at 3756.007 kb on + strand, within MPMX20_03562 at 3756.021 kb on + strand, within MPMX20_03562 at 3756.026 kb on + strand, within MPMX20_03562 at 3756.038 kb on + strand, within MPMX20_03562 at 3756.038 kb on + strand, within MPMX20_03562 at 3756.094 kb on + strand, within MPMX20_03562 at 3756.219 kb on + strand, within MPMX20_03562 at 3756.219 kb on + strand, within MPMX20_03562 at 3756.224 kb on + strand, within MPMX20_03562 at 3756.226 kb on + strand, within MPMX20_03562 at 3756.306 kb on + strand at 3756.306 kb on + strand at 3756.306 kb on + strand at 3756.306 kb on + strand at 3756.306 kb on + strand at 3756.306 kb on + strand at 3756.306 kb on + strand at 3756.306 kb on + strand at 3756.314 kb on - strand at 3756.314 kb on - strand at 3756.314 kb on - strand at 3756.320 kb on + strand at 3756.346 kb on + strand at 3756.380 kb on + strand at 3756.387 kb on + strand at 3756.395 kb on - strand at 3756.395 kb on - strand at 3756.395 kb on - strand at 3756.395 kb on - strand at 3756.446 kb on + strand at 3756.452 kb on - strand at 3756.456 kb on - strand at 3756.473 kb on + strand at 3756.473 kb on + strand at 3756.473 kb on + strand at 3756.473 kb on + strand at 3756.473 kb on + strand at 3756.479 kb on - strand at 3756.479 kb on - strand at 3756.481 kb on - strand at 3756.481 kb on - strand at 3756.481 kb on - strand at 3756.594 kb on - strand, within MPMX20_03563 at 3756.637 kb on + strand, within MPMX20_03563 at 3756.663 kb on - strand, within MPMX20_03563 at 3756.663 kb on - strand, within MPMX20_03563 at 3756.663 kb on - strand, within MPMX20_03563 at 3756.665 kb on + strand, within MPMX20_03563 at 3756.680 kb on + strand, within MPMX20_03563 at 3756.683 kb on - strand, within MPMX20_03563 at 3756.717 kb on - strand, within MPMX20_03563 at 3756.728 kb on - strand, within MPMX20_03563 at 3756.742 kb on + strand, within MPMX20_03563 at 3756.785 kb on - strand, within MPMX20_03563 at 3756.833 kb on - strand, within MPMX20_03563 at 3756.867 kb on + strand, within MPMX20_03563 at 3756.885 kb on - strand, within MPMX20_03563 at 3756.895 kb on + strand, within MPMX20_03563 at 3756.905 kb on + strand, within MPMX20_03563 at 3756.928 kb on + strand, within MPMX20_03563 at 3756.936 kb on - strand, within MPMX20_03563 at 3757.001 kb on - strand, within MPMX20_03563 at 3757.005 kb on + strand, within MPMX20_03563 at 3757.182 kb on + strand, within MPMX20_03563 at 3757.205 kb on + strand, within MPMX20_03563 at 3757.206 kb on + strand, within MPMX20_03563 at 3757.214 kb on - strand, within MPMX20_03563 at 3757.232 kb on - strand, within MPMX20_03563
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 3,754,829 + MPMX20_03561 0.45 -0.5 3,754,914 + MPMX20_03561 0.52 +0.8 3,754,914 + MPMX20_03561 0.52 -2.8 3,754,922 - MPMX20_03561 0.53 -0.4 3,754,948 + MPMX20_03561 0.55 +4.8 3,754,991 + MPMX20_03561 0.59 +0.1 3,754,999 - MPMX20_03561 0.59 +1.6 3,755,056 + MPMX20_03561 0.64 -0.5 3,755,171 - MPMX20_03561 0.74 -0.6 3,755,171 - MPMX20_03561 0.74 +2.4 3,755,171 - MPMX20_03561 0.74 -0.4 3,755,180 + MPMX20_03561 0.75 -3.0 3,755,187 + MPMX20_03561 0.75 +1.2 3,755,200 - MPMX20_03561 0.76 +0.0 3,755,208 + MPMX20_03561 0.77 +2.3 3,755,239 - MPMX20_03561 0.79 +0.7 3,755,248 + MPMX20_03561 0.80 -0.0 3,755,269 + MPMX20_03561 0.82 -1.1 3,755,271 + MPMX20_03561 0.82 +0.4 3,755,293 - MPMX20_03561 0.84 +0.8 3,755,371 + +1.9 3,755,398 - +0.5 3,755,398 - +1.3 3,755,400 + +0.1 3,755,482 + -1.0 3,755,490 - -0.9 3,755,501 + +1.2 3,755,501 + +1.7 3,755,511 - +1.0 3,755,517 - -3.4 3,755,517 - +0.9 3,755,519 - -2.3 3,755,527 - -0.7 3,755,531 + +1.1 3,755,599 - -1.9 3,755,599 - +1.0 3,755,601 + -0.5 3,755,609 - -1.5 3,755,624 - -0.7 3,755,636 - -0.8 3,755,644 - +0.3 3,755,644 - +0.6 3,755,657 + -1.1 3,755,657 + +2.5 3,755,667 - +1.7 3,755,674 + -1.7 3,755,676 - -1.7 3,755,697 - -0.2 3,755,697 - +1.3 3,755,722 - -0.1 3,755,784 + -0.7 3,755,891 + MPMX20_03562 0.18 -0.8 3,755,943 + MPMX20_03562 0.28 +1.3 3,755,950 + MPMX20_03562 0.29 -2.0 3,756,007 + MPMX20_03562 0.40 -1.1 3,756,021 + MPMX20_03562 0.42 -3.3 3,756,026 + MPMX20_03562 0.43 -1.1 3,756,038 + MPMX20_03562 0.46 -2.9 3,756,038 + MPMX20_03562 0.46 -0.4 3,756,094 + MPMX20_03562 0.56 -2.9 3,756,219 + MPMX20_03562 0.80 +1.3 3,756,219 + MPMX20_03562 0.80 -1.8 3,756,224 + MPMX20_03562 0.81 -0.7 3,756,226 + MPMX20_03562 0.81 -0.9 3,756,306 + -1.8 3,756,306 + +1.4 3,756,306 + -2.4 3,756,306 + -1.0 3,756,306 + -1.3 3,756,306 + -0.2 3,756,306 + +0.4 3,756,306 + -1.1 3,756,314 - -0.4 3,756,314 - +1.2 3,756,314 - -0.2 3,756,320 + +2.3 3,756,346 + -0.9 3,756,380 + -0.2 3,756,387 + +0.5 3,756,395 - -1.1 3,756,395 - -0.6 3,756,395 - +1.2 3,756,395 - -0.7 3,756,446 + -0.4 3,756,452 - +2.2 3,756,456 - +0.8 3,756,473 + +0.5 3,756,473 + -0.1 3,756,473 + -1.1 3,756,473 + -0.4 3,756,473 + +2.3 3,756,479 - +2.3 3,756,479 - +0.3 3,756,481 - +2.8 3,756,481 - -1.1 3,756,481 - -2.3 3,756,594 - MPMX20_03563 0.12 -1.8 3,756,637 + MPMX20_03563 0.16 +1.4 3,756,663 - MPMX20_03563 0.18 -0.2 3,756,663 - MPMX20_03563 0.18 -1.8 3,756,663 - MPMX20_03563 0.18 -2.2 3,756,665 + MPMX20_03563 0.18 -0.2 3,756,680 + MPMX20_03563 0.19 +0.4 3,756,683 - MPMX20_03563 0.20 -0.5 3,756,717 - MPMX20_03563 0.22 +1.6 3,756,728 - MPMX20_03563 0.23 -0.2 3,756,742 + MPMX20_03563 0.25 -1.8 3,756,785 - MPMX20_03563 0.28 -0.7 3,756,833 - MPMX20_03563 0.32 -0.6 3,756,867 + MPMX20_03563 0.35 +1.4 3,756,885 - MPMX20_03563 0.37 +0.9 3,756,895 + MPMX20_03563 0.38 -1.4 3,756,905 + MPMX20_03563 0.38 +0.9 3,756,928 + MPMX20_03563 0.40 +1.2 3,756,936 - MPMX20_03563 0.41 +1.9 3,757,001 - MPMX20_03563 0.47 -0.6 3,757,005 + MPMX20_03563 0.47 -1.7 3,757,182 + MPMX20_03563 0.62 -2.3 3,757,205 + MPMX20_03563 0.64 +1.0 3,757,206 + MPMX20_03563 0.64 +1.7 3,757,214 - MPMX20_03563 0.65 -0.3 3,757,232 - MPMX20_03563 0.66 +0.6
Or see this region's nucleotide sequence