Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03562

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03561 and MPMX20_03562 are separated by 314 nucleotidesMPMX20_03562 and MPMX20_03563 are separated by 127 nucleotides MPMX20_03561: MPMX20_03561 - putative transporter, at 3,754,297 to 3,755,481 _03561 MPMX20_03562: MPMX20_03562 - Transcriptional repressor MprA, at 3,755,796 to 3,756,326 _03562 MPMX20_03563: MPMX20_03563 - Multidrug export protein EmrA, at 3,756,454 to 3,757,626 _03563 Position (kb) 3755 3756 3757Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3754.829 kb on + strand, within MPMX20_03561at 3754.914 kb on + strand, within MPMX20_03561at 3754.914 kb on + strand, within MPMX20_03561at 3754.922 kb on - strand, within MPMX20_03561at 3754.948 kb on + strand, within MPMX20_03561at 3754.991 kb on + strand, within MPMX20_03561at 3754.999 kb on - strand, within MPMX20_03561at 3755.056 kb on + strand, within MPMX20_03561at 3755.171 kb on - strand, within MPMX20_03561at 3755.171 kb on - strand, within MPMX20_03561at 3755.171 kb on - strand, within MPMX20_03561at 3755.180 kb on + strand, within MPMX20_03561at 3755.187 kb on + strand, within MPMX20_03561at 3755.200 kb on - strand, within MPMX20_03561at 3755.208 kb on + strand, within MPMX20_03561at 3755.239 kb on - strand, within MPMX20_03561at 3755.248 kb on + strand, within MPMX20_03561at 3755.269 kb on + strand, within MPMX20_03561at 3755.271 kb on + strand, within MPMX20_03561at 3755.293 kb on - strand, within MPMX20_03561at 3755.371 kb on + strandat 3755.398 kb on - strandat 3755.398 kb on - strandat 3755.400 kb on + strandat 3755.482 kb on + strandat 3755.490 kb on - strandat 3755.501 kb on + strandat 3755.501 kb on + strandat 3755.511 kb on - strandat 3755.517 kb on - strandat 3755.517 kb on - strandat 3755.519 kb on - strandat 3755.527 kb on - strandat 3755.531 kb on + strandat 3755.599 kb on - strandat 3755.599 kb on - strandat 3755.601 kb on + strandat 3755.609 kb on - strandat 3755.624 kb on - strandat 3755.636 kb on - strandat 3755.644 kb on - strandat 3755.644 kb on - strandat 3755.657 kb on + strandat 3755.657 kb on + strandat 3755.667 kb on - strandat 3755.674 kb on + strandat 3755.676 kb on - strandat 3755.697 kb on - strandat 3755.697 kb on - strandat 3755.722 kb on - strandat 3755.784 kb on + strandat 3755.891 kb on + strand, within MPMX20_03562at 3755.943 kb on + strand, within MPMX20_03562at 3755.950 kb on + strand, within MPMX20_03562at 3756.007 kb on + strand, within MPMX20_03562at 3756.021 kb on + strand, within MPMX20_03562at 3756.026 kb on + strand, within MPMX20_03562at 3756.038 kb on + strand, within MPMX20_03562at 3756.038 kb on + strand, within MPMX20_03562at 3756.094 kb on + strand, within MPMX20_03562at 3756.219 kb on + strand, within MPMX20_03562at 3756.219 kb on + strand, within MPMX20_03562at 3756.224 kb on + strand, within MPMX20_03562at 3756.226 kb on + strand, within MPMX20_03562at 3756.306 kb on + strandat 3756.306 kb on + strandat 3756.306 kb on + strandat 3756.306 kb on + strandat 3756.306 kb on + strandat 3756.306 kb on + strandat 3756.306 kb on + strandat 3756.306 kb on + strandat 3756.314 kb on - strandat 3756.314 kb on - strandat 3756.314 kb on - strandat 3756.320 kb on + strandat 3756.346 kb on + strandat 3756.380 kb on + strandat 3756.387 kb on + strandat 3756.395 kb on - strandat 3756.395 kb on - strandat 3756.395 kb on - strandat 3756.395 kb on - strandat 3756.446 kb on + strandat 3756.452 kb on - strandat 3756.456 kb on - strandat 3756.473 kb on + strandat 3756.473 kb on + strandat 3756.473 kb on + strandat 3756.473 kb on + strandat 3756.473 kb on + strandat 3756.479 kb on - strandat 3756.479 kb on - strandat 3756.481 kb on - strandat 3756.481 kb on - strandat 3756.481 kb on - strandat 3756.594 kb on - strand, within MPMX20_03563at 3756.637 kb on + strand, within MPMX20_03563at 3756.663 kb on - strand, within MPMX20_03563at 3756.663 kb on - strand, within MPMX20_03563at 3756.663 kb on - strand, within MPMX20_03563at 3756.665 kb on + strand, within MPMX20_03563at 3756.680 kb on + strand, within MPMX20_03563at 3756.683 kb on - strand, within MPMX20_03563at 3756.717 kb on - strand, within MPMX20_03563at 3756.728 kb on - strand, within MPMX20_03563at 3756.742 kb on + strand, within MPMX20_03563at 3756.785 kb on - strand, within MPMX20_03563at 3756.833 kb on - strand, within MPMX20_03563at 3756.867 kb on + strand, within MPMX20_03563at 3756.885 kb on - strand, within MPMX20_03563at 3756.895 kb on + strand, within MPMX20_03563at 3756.905 kb on + strand, within MPMX20_03563at 3756.928 kb on + strand, within MPMX20_03563at 3756.936 kb on - strand, within MPMX20_03563at 3757.001 kb on - strand, within MPMX20_03563at 3757.005 kb on + strand, within MPMX20_03563at 3757.182 kb on + strand, within MPMX20_03563at 3757.205 kb on + strand, within MPMX20_03563at 3757.206 kb on + strand, within MPMX20_03563at 3757.214 kb on - strand, within MPMX20_03563at 3757.232 kb on - strand, within MPMX20_03563

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,754,829 + MPMX20_03561 0.45 -0.5
3,754,914 + MPMX20_03561 0.52 +0.8
3,754,914 + MPMX20_03561 0.52 -2.8
3,754,922 - MPMX20_03561 0.53 -0.4
3,754,948 + MPMX20_03561 0.55 +4.8
3,754,991 + MPMX20_03561 0.59 +0.1
3,754,999 - MPMX20_03561 0.59 +1.6
3,755,056 + MPMX20_03561 0.64 -0.5
3,755,171 - MPMX20_03561 0.74 -0.6
3,755,171 - MPMX20_03561 0.74 +2.4
3,755,171 - MPMX20_03561 0.74 -0.4
3,755,180 + MPMX20_03561 0.75 -3.0
3,755,187 + MPMX20_03561 0.75 +1.2
3,755,200 - MPMX20_03561 0.76 +0.0
3,755,208 + MPMX20_03561 0.77 +2.3
3,755,239 - MPMX20_03561 0.79 +0.7
3,755,248 + MPMX20_03561 0.80 -0.0
3,755,269 + MPMX20_03561 0.82 -1.1
3,755,271 + MPMX20_03561 0.82 +0.4
3,755,293 - MPMX20_03561 0.84 +0.8
3,755,371 + +1.9
3,755,398 - +0.5
3,755,398 - +1.3
3,755,400 + +0.1
3,755,482 + -1.0
3,755,490 - -0.9
3,755,501 + +1.2
3,755,501 + +1.7
3,755,511 - +1.0
3,755,517 - -3.4
3,755,517 - +0.9
3,755,519 - -2.3
3,755,527 - -0.7
3,755,531 + +1.1
3,755,599 - -1.9
3,755,599 - +1.0
3,755,601 + -0.5
3,755,609 - -1.5
3,755,624 - -0.7
3,755,636 - -0.8
3,755,644 - +0.3
3,755,644 - +0.6
3,755,657 + -1.1
3,755,657 + +2.5
3,755,667 - +1.7
3,755,674 + -1.7
3,755,676 - -1.7
3,755,697 - -0.2
3,755,697 - +1.3
3,755,722 - -0.1
3,755,784 + -0.7
3,755,891 + MPMX20_03562 0.18 -0.8
3,755,943 + MPMX20_03562 0.28 +1.3
3,755,950 + MPMX20_03562 0.29 -2.0
3,756,007 + MPMX20_03562 0.40 -1.1
3,756,021 + MPMX20_03562 0.42 -3.3
3,756,026 + MPMX20_03562 0.43 -1.1
3,756,038 + MPMX20_03562 0.46 -2.9
3,756,038 + MPMX20_03562 0.46 -0.4
3,756,094 + MPMX20_03562 0.56 -2.9
3,756,219 + MPMX20_03562 0.80 +1.3
3,756,219 + MPMX20_03562 0.80 -1.8
3,756,224 + MPMX20_03562 0.81 -0.7
3,756,226 + MPMX20_03562 0.81 -0.9
3,756,306 + -1.8
3,756,306 + +1.4
3,756,306 + -2.4
3,756,306 + -1.0
3,756,306 + -1.3
3,756,306 + -0.2
3,756,306 + +0.4
3,756,306 + -1.1
3,756,314 - -0.4
3,756,314 - +1.2
3,756,314 - -0.2
3,756,320 + +2.3
3,756,346 + -0.9
3,756,380 + -0.2
3,756,387 + +0.5
3,756,395 - -1.1
3,756,395 - -0.6
3,756,395 - +1.2
3,756,395 - -0.7
3,756,446 + -0.4
3,756,452 - +2.2
3,756,456 - +0.8
3,756,473 + +0.5
3,756,473 + -0.1
3,756,473 + -1.1
3,756,473 + -0.4
3,756,473 + +2.3
3,756,479 - +2.3
3,756,479 - +0.3
3,756,481 - +2.8
3,756,481 - -1.1
3,756,481 - -2.3
3,756,594 - MPMX20_03563 0.12 -1.8
3,756,637 + MPMX20_03563 0.16 +1.4
3,756,663 - MPMX20_03563 0.18 -0.2
3,756,663 - MPMX20_03563 0.18 -1.8
3,756,663 - MPMX20_03563 0.18 -2.2
3,756,665 + MPMX20_03563 0.18 -0.2
3,756,680 + MPMX20_03563 0.19 +0.4
3,756,683 - MPMX20_03563 0.20 -0.5
3,756,717 - MPMX20_03563 0.22 +1.6
3,756,728 - MPMX20_03563 0.23 -0.2
3,756,742 + MPMX20_03563 0.25 -1.8
3,756,785 - MPMX20_03563 0.28 -0.7
3,756,833 - MPMX20_03563 0.32 -0.6
3,756,867 + MPMX20_03563 0.35 +1.4
3,756,885 - MPMX20_03563 0.37 +0.9
3,756,895 + MPMX20_03563 0.38 -1.4
3,756,905 + MPMX20_03563 0.38 +0.9
3,756,928 + MPMX20_03563 0.40 +1.2
3,756,936 - MPMX20_03563 0.41 +1.9
3,757,001 - MPMX20_03563 0.47 -0.6
3,757,005 + MPMX20_03563 0.47 -1.7
3,757,182 + MPMX20_03563 0.62 -2.3
3,757,205 + MPMX20_03563 0.64 +1.0
3,757,206 + MPMX20_03563 0.64 +1.7
3,757,214 - MPMX20_03563 0.65 -0.3
3,757,232 - MPMX20_03563 0.66 +0.6

Or see this region's nucleotide sequence