Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03461 and MPMX20_03462 are separated by 129 nucleotides MPMX20_03462 and MPMX20_03463 overlap by 4 nucleotides MPMX20_03463 and MPMX20_03464 are separated by 131 nucleotides
MPMX20_03461: MPMX20_03461 - Chaperone protein ClpB, at 3,651,389 to 3,653,962
_03461
MPMX20_03462: MPMX20_03462 - Polyphenol oxidase, at 3,654,092 to 3,654,823
_03462
MPMX20_03463: MPMX20_03463 - Ribosomal large subunit pseudouridine synthase D, at 3,654,820 to 3,655,800
_03463
MPMX20_03464: MPMX20_03464 - Outer membrane protein assembly factor BamD, at 3,655,932 to 3,656,669
_03464
Position (kb)
3654
3655
3656 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3653.894 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.919 kb on - strand at 3653.926 kb on - strand at 3653.926 kb on - strand at 3653.965 kb on - strand at 3653.969 kb on + strand at 3653.970 kb on + strand at 3653.977 kb on - strand at 3653.977 kb on - strand at 3653.987 kb on - strand at 3653.998 kb on + strand at 3654.013 kb on + strand at 3654.030 kb on - strand at 3654.074 kb on - strand at 3654.076 kb on + strand at 3654.079 kb on - strand at 3654.180 kb on - strand, within MPMX20_03462 at 3654.197 kb on - strand, within MPMX20_03462 at 3654.197 kb on - strand, within MPMX20_03462 at 3654.312 kb on - strand, within MPMX20_03462 at 3654.315 kb on + strand, within MPMX20_03462 at 3654.322 kb on + strand, within MPMX20_03462 at 3654.330 kb on - strand, within MPMX20_03462 at 3654.349 kb on + strand, within MPMX20_03462 at 3654.357 kb on - strand, within MPMX20_03462 at 3654.366 kb on + strand, within MPMX20_03462 at 3654.369 kb on - strand, within MPMX20_03462 at 3654.394 kb on + strand, within MPMX20_03462 at 3654.394 kb on + strand, within MPMX20_03462 at 3654.426 kb on + strand, within MPMX20_03462 at 3654.426 kb on + strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.538 kb on + strand, within MPMX20_03462 at 3654.546 kb on - strand, within MPMX20_03462 at 3654.593 kb on + strand, within MPMX20_03462 at 3654.609 kb on + strand, within MPMX20_03462 at 3654.617 kb on - strand, within MPMX20_03462 at 3654.627 kb on - strand, within MPMX20_03462 at 3654.627 kb on - strand, within MPMX20_03462 at 3654.696 kb on - strand, within MPMX20_03462 at 3654.697 kb on + strand, within MPMX20_03462 at 3654.742 kb on + strand, within MPMX20_03462 at 3654.760 kb on + strand at 3654.770 kb on + strand at 3654.783 kb on + strand at 3654.783 kb on + strand at 3654.783 kb on + strand at 3654.791 kb on - strand at 3654.791 kb on - strand at 3654.791 kb on - strand at 3654.791 kb on - strand at 3654.800 kb on + strand at 3654.818 kb on + strand at 3654.819 kb on + strand at 3654.826 kb on - strand at 3654.884 kb on + strand at 3654.884 kb on + strand at 3654.892 kb on - strand at 3654.929 kb on - strand, within MPMX20_03463 at 3654.959 kb on - strand, within MPMX20_03463 at 3654.980 kb on + strand, within MPMX20_03463 at 3654.997 kb on + strand, within MPMX20_03463 at 3655.040 kb on + strand, within MPMX20_03463 at 3655.040 kb on + strand, within MPMX20_03463 at 3655.040 kb on + strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.052 kb on + strand, within MPMX20_03463 at 3655.093 kb on + strand, within MPMX20_03463 at 3655.101 kb on - strand, within MPMX20_03463 at 3655.214 kb on + strand, within MPMX20_03463 at 3655.231 kb on + strand, within MPMX20_03463 at 3655.333 kb on + strand, within MPMX20_03463 at 3655.333 kb on + strand, within MPMX20_03463 at 3655.333 kb on + strand, within MPMX20_03463 at 3655.341 kb on - strand, within MPMX20_03463 at 3655.371 kb on - strand, within MPMX20_03463 at 3655.371 kb on - strand, within MPMX20_03463 at 3655.379 kb on + strand, within MPMX20_03463 at 3655.456 kb on - strand, within MPMX20_03463 at 3655.525 kb on + strand, within MPMX20_03463 at 3655.581 kb on - strand, within MPMX20_03463 at 3655.682 kb on - strand, within MPMX20_03463 at 3655.740 kb on - strand at 3655.744 kb on + strand at 3655.753 kb on + strand at 3655.772 kb on + strand at 3655.782 kb on + strand at 3655.782 kb on + strand at 3655.782 kb on + strand at 3655.782 kb on + strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.796 kb on + strand at 3655.826 kb on + strand at 3655.850 kb on - strand at 3655.850 kb on - strand at 3656.597 kb on + strand at 3656.629 kb on - strand at 3656.629 kb on - strand at 3656.740 kb on + strand at 3656.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 3,653,894 + +0.4 3,653,899 + -0.2 3,653,899 + -1.0 3,653,899 + -0.9 3,653,899 + +0.4 3,653,899 + +0.5 3,653,899 + +1.3 3,653,899 + -1.0 3,653,899 + -1.5 3,653,899 + +1.7 3,653,899 + +0.1 3,653,899 + +0.4 3,653,899 + +1.2 3,653,899 + -0.8 3,653,899 + -1.2 3,653,899 + -0.1 3,653,899 + +1.6 3,653,899 + +0.4 3,653,899 + -0.8 3,653,907 - -1.7 3,653,907 - -0.1 3,653,907 - +1.4 3,653,907 - -0.1 3,653,907 - -0.2 3,653,907 - +2.3 3,653,907 - +0.2 3,653,907 - +0.8 3,653,907 - -1.2 3,653,919 - -0.7 3,653,926 - +1.1 3,653,926 - -2.1 3,653,965 - -0.5 3,653,969 + +0.3 3,653,970 + -2.3 3,653,977 - -0.1 3,653,977 - +0.5 3,653,987 - -0.6 3,653,998 + +0.6 3,654,013 + -0.8 3,654,030 - +0.5 3,654,074 - -0.7 3,654,076 + -1.1 3,654,079 - +0.2 3,654,180 - MPMX20_03462 0.12 +1.6 3,654,197 - MPMX20_03462 0.14 -2.2 3,654,197 - MPMX20_03462 0.14 -0.5 3,654,312 - MPMX20_03462 0.30 -0.2 3,654,315 + MPMX20_03462 0.30 -2.3 3,654,322 + MPMX20_03462 0.31 +3.0 3,654,330 - MPMX20_03462 0.33 -1.6 3,654,349 + MPMX20_03462 0.35 +0.4 3,654,357 - MPMX20_03462 0.36 -0.5 3,654,366 + MPMX20_03462 0.37 +0.2 3,654,369 - MPMX20_03462 0.38 -1.0 3,654,394 + MPMX20_03462 0.41 -1.3 3,654,394 + MPMX20_03462 0.41 +0.2 3,654,426 + MPMX20_03462 0.46 -2.8 3,654,426 + MPMX20_03462 0.46 -2.7 3,654,434 - MPMX20_03462 0.47 +0.2 3,654,434 - MPMX20_03462 0.47 -0.2 3,654,434 - MPMX20_03462 0.47 -0.6 3,654,434 - MPMX20_03462 0.47 -0.0 3,654,434 - MPMX20_03462 0.47 -0.9 3,654,434 - MPMX20_03462 0.47 -2.8 3,654,436 + MPMX20_03462 0.47 -0.6 3,654,436 + MPMX20_03462 0.47 -0.3 3,654,436 + MPMX20_03462 0.47 -0.5 3,654,436 + MPMX20_03462 0.47 +0.5 3,654,436 + MPMX20_03462 0.47 +0.2 3,654,436 + MPMX20_03462 0.47 -0.5 3,654,436 + MPMX20_03462 0.47 -1.6 3,654,436 + MPMX20_03462 0.47 +0.4 3,654,444 - MPMX20_03462 0.48 +0.9 3,654,444 - MPMX20_03462 0.48 -1.4 3,654,444 - MPMX20_03462 0.48 +1.6 3,654,444 - MPMX20_03462 0.48 +0.4 3,654,538 + MPMX20_03462 0.61 -1.1 3,654,546 - MPMX20_03462 0.62 -1.1 3,654,593 + MPMX20_03462 0.68 +2.5 3,654,609 + MPMX20_03462 0.71 +0.4 3,654,617 - MPMX20_03462 0.72 -1.0 3,654,627 - MPMX20_03462 0.73 -2.0 3,654,627 - MPMX20_03462 0.73 -1.3 3,654,696 - MPMX20_03462 0.83 +1.5 3,654,697 + MPMX20_03462 0.83 +2.3 3,654,742 + MPMX20_03462 0.89 +0.6 3,654,760 + -1.2 3,654,770 + -2.5 3,654,783 + +1.5 3,654,783 + -0.8 3,654,783 + +2.0 3,654,791 - -0.0 3,654,791 - -1.0 3,654,791 - -1.5 3,654,791 - -0.9 3,654,800 + -1.2 3,654,818 + +0.4 3,654,819 + +1.1 3,654,826 - -0.6 3,654,884 + +4.4 3,654,884 + +0.7 3,654,892 - +2.0 3,654,929 - MPMX20_03463 0.11 -0.9 3,654,959 - MPMX20_03463 0.14 +1.4 3,654,980 + MPMX20_03463 0.16 -1.8 3,654,997 + MPMX20_03463 0.18 -1.5 3,655,040 + MPMX20_03463 0.22 -2.9 3,655,040 + MPMX20_03463 0.22 -0.1 3,655,040 + MPMX20_03463 0.22 -0.5 3,655,048 - MPMX20_03463 0.23 -2.5 3,655,048 - MPMX20_03463 0.23 -0.8 3,655,048 - MPMX20_03463 0.23 -1.6 3,655,048 - MPMX20_03463 0.23 -0.9 3,655,052 + MPMX20_03463 0.24 -0.9 3,655,093 + MPMX20_03463 0.28 +0.1 3,655,101 - MPMX20_03463 0.29 -0.8 3,655,214 + MPMX20_03463 0.40 -2.0 3,655,231 + MPMX20_03463 0.42 -2.8 3,655,333 + MPMX20_03463 0.52 -2.5 3,655,333 + MPMX20_03463 0.52 -1.3 3,655,333 + MPMX20_03463 0.52 -1.2 3,655,341 - MPMX20_03463 0.53 +0.6 3,655,371 - MPMX20_03463 0.56 -0.3 3,655,371 - MPMX20_03463 0.56 -0.6 3,655,379 + MPMX20_03463 0.57 +0.0 3,655,456 - MPMX20_03463 0.65 -1.2 3,655,525 + MPMX20_03463 0.72 -0.6 3,655,581 - MPMX20_03463 0.78 +2.0 3,655,682 - MPMX20_03463 0.88 -1.7 3,655,740 - -0.5 3,655,744 + -0.3 3,655,753 + -0.3 3,655,772 + -0.5 3,655,782 + +0.7 3,655,782 + -1.2 3,655,782 + -2.9 3,655,782 + -0.7 3,655,790 - +0.1 3,655,790 - +1.0 3,655,790 - -0.8 3,655,790 - -1.1 3,655,790 - -1.0 3,655,796 + +1.4 3,655,826 + -1.2 3,655,850 - -1.1 3,655,850 - +1.0 3,656,597 + -1.2 3,656,629 - -0.6 3,656,629 - -1.2 3,656,740 + -1.4 3,656,757 - -0.2
Or see this region's nucleotide sequence