Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03463

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03461 and MPMX20_03462 are separated by 129 nucleotidesMPMX20_03462 and MPMX20_03463 overlap by 4 nucleotidesMPMX20_03463 and MPMX20_03464 are separated by 131 nucleotides MPMX20_03461: MPMX20_03461 - Chaperone protein ClpB, at 3,651,389 to 3,653,962 _03461 MPMX20_03462: MPMX20_03462 - Polyphenol oxidase, at 3,654,092 to 3,654,823 _03462 MPMX20_03463: MPMX20_03463 - Ribosomal large subunit pseudouridine synthase D, at 3,654,820 to 3,655,800 _03463 MPMX20_03464: MPMX20_03464 - Outer membrane protein assembly factor BamD, at 3,655,932 to 3,656,669 _03464 Position (kb) 3654 3655 3656Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3653.894 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.919 kb on - strandat 3653.926 kb on - strandat 3653.926 kb on - strandat 3653.965 kb on - strandat 3653.969 kb on + strandat 3653.970 kb on + strandat 3653.977 kb on - strandat 3653.977 kb on - strandat 3653.987 kb on - strandat 3653.998 kb on + strandat 3654.013 kb on + strandat 3654.030 kb on - strandat 3654.074 kb on - strandat 3654.076 kb on + strandat 3654.079 kb on - strandat 3654.180 kb on - strand, within MPMX20_03462at 3654.197 kb on - strand, within MPMX20_03462at 3654.197 kb on - strand, within MPMX20_03462at 3654.312 kb on - strand, within MPMX20_03462at 3654.315 kb on + strand, within MPMX20_03462at 3654.322 kb on + strand, within MPMX20_03462at 3654.330 kb on - strand, within MPMX20_03462at 3654.349 kb on + strand, within MPMX20_03462at 3654.357 kb on - strand, within MPMX20_03462at 3654.366 kb on + strand, within MPMX20_03462at 3654.369 kb on - strand, within MPMX20_03462at 3654.394 kb on + strand, within MPMX20_03462at 3654.394 kb on + strand, within MPMX20_03462at 3654.426 kb on + strand, within MPMX20_03462at 3654.426 kb on + strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.444 kb on - strand, within MPMX20_03462at 3654.444 kb on - strand, within MPMX20_03462at 3654.444 kb on - strand, within MPMX20_03462at 3654.444 kb on - strand, within MPMX20_03462at 3654.538 kb on + strand, within MPMX20_03462at 3654.546 kb on - strand, within MPMX20_03462at 3654.593 kb on + strand, within MPMX20_03462at 3654.609 kb on + strand, within MPMX20_03462at 3654.617 kb on - strand, within MPMX20_03462at 3654.627 kb on - strand, within MPMX20_03462at 3654.627 kb on - strand, within MPMX20_03462at 3654.696 kb on - strand, within MPMX20_03462at 3654.697 kb on + strand, within MPMX20_03462at 3654.742 kb on + strand, within MPMX20_03462at 3654.760 kb on + strandat 3654.770 kb on + strandat 3654.783 kb on + strandat 3654.783 kb on + strandat 3654.783 kb on + strandat 3654.791 kb on - strandat 3654.791 kb on - strandat 3654.791 kb on - strandat 3654.791 kb on - strandat 3654.800 kb on + strandat 3654.818 kb on + strandat 3654.819 kb on + strandat 3654.826 kb on - strandat 3654.884 kb on + strandat 3654.884 kb on + strandat 3654.892 kb on - strandat 3654.929 kb on - strand, within MPMX20_03463at 3654.959 kb on - strand, within MPMX20_03463at 3654.980 kb on + strand, within MPMX20_03463at 3654.997 kb on + strand, within MPMX20_03463at 3655.040 kb on + strand, within MPMX20_03463at 3655.040 kb on + strand, within MPMX20_03463at 3655.040 kb on + strand, within MPMX20_03463at 3655.048 kb on - strand, within MPMX20_03463at 3655.048 kb on - strand, within MPMX20_03463at 3655.048 kb on - strand, within MPMX20_03463at 3655.048 kb on - strand, within MPMX20_03463at 3655.052 kb on + strand, within MPMX20_03463at 3655.093 kb on + strand, within MPMX20_03463at 3655.101 kb on - strand, within MPMX20_03463at 3655.214 kb on + strand, within MPMX20_03463at 3655.231 kb on + strand, within MPMX20_03463at 3655.333 kb on + strand, within MPMX20_03463at 3655.333 kb on + strand, within MPMX20_03463at 3655.333 kb on + strand, within MPMX20_03463at 3655.341 kb on - strand, within MPMX20_03463at 3655.371 kb on - strand, within MPMX20_03463at 3655.371 kb on - strand, within MPMX20_03463at 3655.379 kb on + strand, within MPMX20_03463at 3655.456 kb on - strand, within MPMX20_03463at 3655.525 kb on + strand, within MPMX20_03463at 3655.581 kb on - strand, within MPMX20_03463at 3655.682 kb on - strand, within MPMX20_03463at 3655.740 kb on - strandat 3655.744 kb on + strandat 3655.753 kb on + strandat 3655.772 kb on + strandat 3655.782 kb on + strandat 3655.782 kb on + strandat 3655.782 kb on + strandat 3655.782 kb on + strandat 3655.790 kb on - strandat 3655.790 kb on - strandat 3655.790 kb on - strandat 3655.790 kb on - strandat 3655.790 kb on - strandat 3655.796 kb on + strandat 3655.826 kb on + strandat 3655.850 kb on - strandat 3655.850 kb on - strandat 3656.597 kb on + strandat 3656.629 kb on - strandat 3656.629 kb on - strandat 3656.740 kb on + strandat 3656.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,653,894 + +0.4
3,653,899 + -0.2
3,653,899 + -1.0
3,653,899 + -0.9
3,653,899 + +0.4
3,653,899 + +0.5
3,653,899 + +1.3
3,653,899 + -1.0
3,653,899 + -1.5
3,653,899 + +1.7
3,653,899 + +0.1
3,653,899 + +0.4
3,653,899 + +1.2
3,653,899 + -0.8
3,653,899 + -1.2
3,653,899 + -0.1
3,653,899 + +1.6
3,653,899 + +0.4
3,653,899 + -0.8
3,653,907 - -1.7
3,653,907 - -0.1
3,653,907 - +1.4
3,653,907 - -0.1
3,653,907 - -0.2
3,653,907 - +2.3
3,653,907 - +0.2
3,653,907 - +0.8
3,653,907 - -1.2
3,653,919 - -0.7
3,653,926 - +1.1
3,653,926 - -2.1
3,653,965 - -0.5
3,653,969 + +0.3
3,653,970 + -2.3
3,653,977 - -0.1
3,653,977 - +0.5
3,653,987 - -0.6
3,653,998 + +0.6
3,654,013 + -0.8
3,654,030 - +0.5
3,654,074 - -0.7
3,654,076 + -1.1
3,654,079 - +0.2
3,654,180 - MPMX20_03462 0.12 +1.6
3,654,197 - MPMX20_03462 0.14 -2.2
3,654,197 - MPMX20_03462 0.14 -0.5
3,654,312 - MPMX20_03462 0.30 -0.2
3,654,315 + MPMX20_03462 0.30 -2.3
3,654,322 + MPMX20_03462 0.31 +3.0
3,654,330 - MPMX20_03462 0.33 -1.6
3,654,349 + MPMX20_03462 0.35 +0.4
3,654,357 - MPMX20_03462 0.36 -0.5
3,654,366 + MPMX20_03462 0.37 +0.2
3,654,369 - MPMX20_03462 0.38 -1.0
3,654,394 + MPMX20_03462 0.41 -1.3
3,654,394 + MPMX20_03462 0.41 +0.2
3,654,426 + MPMX20_03462 0.46 -2.8
3,654,426 + MPMX20_03462 0.46 -2.7
3,654,434 - MPMX20_03462 0.47 +0.2
3,654,434 - MPMX20_03462 0.47 -0.2
3,654,434 - MPMX20_03462 0.47 -0.6
3,654,434 - MPMX20_03462 0.47 -0.0
3,654,434 - MPMX20_03462 0.47 -0.9
3,654,434 - MPMX20_03462 0.47 -2.8
3,654,436 + MPMX20_03462 0.47 -0.6
3,654,436 + MPMX20_03462 0.47 -0.3
3,654,436 + MPMX20_03462 0.47 -0.5
3,654,436 + MPMX20_03462 0.47 +0.5
3,654,436 + MPMX20_03462 0.47 +0.2
3,654,436 + MPMX20_03462 0.47 -0.5
3,654,436 + MPMX20_03462 0.47 -1.6
3,654,436 + MPMX20_03462 0.47 +0.4
3,654,444 - MPMX20_03462 0.48 +0.9
3,654,444 - MPMX20_03462 0.48 -1.4
3,654,444 - MPMX20_03462 0.48 +1.6
3,654,444 - MPMX20_03462 0.48 +0.4
3,654,538 + MPMX20_03462 0.61 -1.1
3,654,546 - MPMX20_03462 0.62 -1.1
3,654,593 + MPMX20_03462 0.68 +2.5
3,654,609 + MPMX20_03462 0.71 +0.4
3,654,617 - MPMX20_03462 0.72 -1.0
3,654,627 - MPMX20_03462 0.73 -2.0
3,654,627 - MPMX20_03462 0.73 -1.3
3,654,696 - MPMX20_03462 0.83 +1.5
3,654,697 + MPMX20_03462 0.83 +2.3
3,654,742 + MPMX20_03462 0.89 +0.6
3,654,760 + -1.2
3,654,770 + -2.5
3,654,783 + +1.5
3,654,783 + -0.8
3,654,783 + +2.0
3,654,791 - -0.0
3,654,791 - -1.0
3,654,791 - -1.5
3,654,791 - -0.9
3,654,800 + -1.2
3,654,818 + +0.4
3,654,819 + +1.1
3,654,826 - -0.6
3,654,884 + +4.4
3,654,884 + +0.7
3,654,892 - +2.0
3,654,929 - MPMX20_03463 0.11 -0.9
3,654,959 - MPMX20_03463 0.14 +1.4
3,654,980 + MPMX20_03463 0.16 -1.8
3,654,997 + MPMX20_03463 0.18 -1.5
3,655,040 + MPMX20_03463 0.22 -2.9
3,655,040 + MPMX20_03463 0.22 -0.1
3,655,040 + MPMX20_03463 0.22 -0.5
3,655,048 - MPMX20_03463 0.23 -2.5
3,655,048 - MPMX20_03463 0.23 -0.8
3,655,048 - MPMX20_03463 0.23 -1.6
3,655,048 - MPMX20_03463 0.23 -0.9
3,655,052 + MPMX20_03463 0.24 -0.9
3,655,093 + MPMX20_03463 0.28 +0.1
3,655,101 - MPMX20_03463 0.29 -0.8
3,655,214 + MPMX20_03463 0.40 -2.0
3,655,231 + MPMX20_03463 0.42 -2.8
3,655,333 + MPMX20_03463 0.52 -2.5
3,655,333 + MPMX20_03463 0.52 -1.3
3,655,333 + MPMX20_03463 0.52 -1.2
3,655,341 - MPMX20_03463 0.53 +0.6
3,655,371 - MPMX20_03463 0.56 -0.3
3,655,371 - MPMX20_03463 0.56 -0.6
3,655,379 + MPMX20_03463 0.57 +0.0
3,655,456 - MPMX20_03463 0.65 -1.2
3,655,525 + MPMX20_03463 0.72 -0.6
3,655,581 - MPMX20_03463 0.78 +2.0
3,655,682 - MPMX20_03463 0.88 -1.7
3,655,740 - -0.5
3,655,744 + -0.3
3,655,753 + -0.3
3,655,772 + -0.5
3,655,782 + +0.7
3,655,782 + -1.2
3,655,782 + -2.9
3,655,782 + -0.7
3,655,790 - +0.1
3,655,790 - +1.0
3,655,790 - -0.8
3,655,790 - -1.1
3,655,790 - -1.0
3,655,796 + +1.4
3,655,826 + -1.2
3,655,850 - -1.1
3,655,850 - +1.0
3,656,597 + -1.2
3,656,629 - -0.6
3,656,629 - -1.2
3,656,740 + -1.4
3,656,757 - -0.2

Or see this region's nucleotide sequence