Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00899

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00897 and MPMX20_00898 are separated by 32 nucleotidesMPMX20_00898 and MPMX20_00899 are separated by 0 nucleotidesMPMX20_00899 and MPMX20_00900 are separated by 55 nucleotidesMPMX20_00900 and MPMX20_00901 are separated by 132 nucleotides MPMX20_00897: MPMX20_00897 - Hydroxyacylglutathione hydrolase GloB, at 945,959 to 946,717 _00897 MPMX20_00898: MPMX20_00898 - hypothetical protein, at 946,750 to 947,466 _00898 MPMX20_00899: MPMX20_00899 - Ribonuclease HI, at 947,467 to 947,934 _00899 MPMX20_00900: MPMX20_00900 - DNA polymerase III subunit epsilon, at 947,990 to 948,730 _00900 MPMX20_00901: MPMX20_00901 - tRNA-Asp, at 948,863 to 948,939 _00901 Position (kb) 947 948Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 946.467 kb on + strand, within MPMX20_00897at 946.544 kb on - strand, within MPMX20_00897at 946.567 kb on + strand, within MPMX20_00897at 946.570 kb on - strand, within MPMX20_00897at 946.583 kb on - strand, within MPMX20_00897at 946.693 kb on - strandat 946.711 kb on + strandat 946.749 kb on + strandat 946.786 kb on + strandat 946.806 kb on + strandat 946.812 kb on + strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.833 kb on + strand, within MPMX20_00898at 946.837 kb on + strand, within MPMX20_00898at 946.884 kb on + strand, within MPMX20_00898at 946.928 kb on + strand, within MPMX20_00898at 946.936 kb on - strand, within MPMX20_00898at 946.944 kb on + strand, within MPMX20_00898at 946.947 kb on - strand, within MPMX20_00898at 946.951 kb on - strand, within MPMX20_00898at 946.972 kb on + strand, within MPMX20_00898at 946.972 kb on + strand, within MPMX20_00898at 947.143 kb on + strand, within MPMX20_00898at 947.157 kb on + strand, within MPMX20_00898at 947.178 kb on + strand, within MPMX20_00898at 947.208 kb on + strand, within MPMX20_00898at 947.216 kb on - strand, within MPMX20_00898at 947.249 kb on + strand, within MPMX20_00898at 947.311 kb on + strand, within MPMX20_00898at 947.311 kb on + strand, within MPMX20_00898at 947.314 kb on - strand, within MPMX20_00898at 947.342 kb on + strand, within MPMX20_00898at 947.349 kb on + strand, within MPMX20_00898at 947.491 kb on + strandat 947.504 kb on + strandat 947.575 kb on - strand, within MPMX20_00899at 947.576 kb on - strand, within MPMX20_00899at 947.707 kb on - strand, within MPMX20_00899at 947.785 kb on + strand, within MPMX20_00899at 947.880 kb on + strand, within MPMX20_00899at 947.903 kb on - strandat 947.996 kb on + strandat 947.996 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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946,467 + MPMX20_00897 0.67 -0.7
946,544 - MPMX20_00897 0.77 +0.9
946,567 + MPMX20_00897 0.80 -0.7
946,570 - MPMX20_00897 0.81 -0.2
946,583 - MPMX20_00897 0.82 +0.1
946,693 - +3.3
946,711 + +1.1
946,749 + +0.4
946,786 + +0.2
946,806 + -1.6
946,812 + +1.0
946,814 - -0.7
946,814 - -1.3
946,814 - -1.0
946,814 - -0.1
946,814 - +1.0
946,833 + MPMX20_00898 0.12 -1.9
946,837 + MPMX20_00898 0.12 -1.4
946,884 + MPMX20_00898 0.19 +0.3
946,928 + MPMX20_00898 0.25 -0.6
946,936 - MPMX20_00898 0.26 -1.4
946,944 + MPMX20_00898 0.27 +0.3
946,947 - MPMX20_00898 0.27 -0.7
946,951 - MPMX20_00898 0.28 -1.0
946,972 + MPMX20_00898 0.31 +0.6
946,972 + MPMX20_00898 0.31 -0.7
947,143 + MPMX20_00898 0.55 +0.1
947,157 + MPMX20_00898 0.57 +2.7
947,178 + MPMX20_00898 0.60 -3.1
947,208 + MPMX20_00898 0.64 +0.1
947,216 - MPMX20_00898 0.65 +2.1
947,249 + MPMX20_00898 0.70 -0.9
947,311 + MPMX20_00898 0.78 -0.7
947,311 + MPMX20_00898 0.78 +1.3
947,314 - MPMX20_00898 0.79 -0.1
947,342 + MPMX20_00898 0.83 +2.1
947,349 + MPMX20_00898 0.84 +0.6
947,491 + -1.2
947,504 + -0.2
947,575 - MPMX20_00899 0.23 -0.2
947,576 - MPMX20_00899 0.23 -2.6
947,707 - MPMX20_00899 0.51 +0.6
947,785 + MPMX20_00899 0.68 -0.2
947,880 + MPMX20_00899 0.88 -0.0
947,903 - +0.1
947,996 + +1.3
947,996 + +2.0

Or see this region's nucleotide sequence