Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00832

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00830 and MPMX20_00831 are separated by 59 nucleotidesMPMX20_00831 and MPMX20_00832 are separated by 176 nucleotidesMPMX20_00832 and MPMX20_00833 overlap by 11 nucleotidesMPMX20_00833 and MPMX20_00834 are separated by 73 nucleotides MPMX20_00830: MPMX20_00830 - Glutamyl-Q tRNA(Asp) synthetase, at 872,181 to 873,071 _00830 MPMX20_00831: MPMX20_00831 - RNA polymerase-binding transcription factor DksA, at 873,131 to 873,586 _00831 MPMX20_00832: MPMX20_00832 - Sugar fermentation stimulation protein A, at 873,763 to 874,467 _00832 MPMX20_00833: MPMX20_00833 - RNA 2',3'-cyclic phosphodiesterase, at 874,457 to 875,011 _00833 MPMX20_00834: MPMX20_00834 - ATP-dependent RNA helicase HrpB, at 875,085 to 877,514 _00834 Position (kb) 873 874 875Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 872.769 kb on - strand, within MPMX20_00830at 872.895 kb on + strand, within MPMX20_00830at 872.900 kb on + strand, within MPMX20_00830at 872.974 kb on - strand, within MPMX20_00830at 873.047 kb on + strandat 873.069 kb on + strandat 873.103 kb on + strandat 873.111 kb on - strandat 873.111 kb on - strandat 873.111 kb on - strandat 873.113 kb on + strandat 873.127 kb on + strandat 873.187 kb on + strand, within MPMX20_00831at 873.188 kb on - strand, within MPMX20_00831at 873.195 kb on - strand, within MPMX20_00831at 873.329 kb on + strand, within MPMX20_00831at 873.339 kb on - strand, within MPMX20_00831at 873.364 kb on + strand, within MPMX20_00831at 873.364 kb on + strand, within MPMX20_00831at 873.470 kb on - strand, within MPMX20_00831at 873.470 kb on - strand, within MPMX20_00831at 873.484 kb on - strand, within MPMX20_00831at 873.486 kb on - strand, within MPMX20_00831at 873.596 kb on + strandat 873.608 kb on + strandat 873.608 kb on + strandat 873.616 kb on - strandat 873.616 kb on - strandat 873.617 kb on + strandat 873.650 kb on - strandat 873.650 kb on - strandat 873.683 kb on + strandat 873.691 kb on + strandat 873.691 kb on - strandat 873.691 kb on - strandat 873.693 kb on + strandat 873.693 kb on + strandat 873.693 kb on + strandat 873.737 kb on - strandat 873.762 kb on - strandat 873.802 kb on - strandat 873.826 kb on + strandat 873.827 kb on + strandat 873.834 kb on + strand, within MPMX20_00832at 873.842 kb on + strand, within MPMX20_00832at 873.930 kb on - strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.976 kb on - strand, within MPMX20_00832at 873.976 kb on - strand, within MPMX20_00832at 873.981 kb on - strand, within MPMX20_00832at 873.999 kb on - strand, within MPMX20_00832at 874.005 kb on + strand, within MPMX20_00832at 874.007 kb on - strand, within MPMX20_00832at 874.013 kb on - strand, within MPMX20_00832at 874.092 kb on - strand, within MPMX20_00832at 874.112 kb on - strand, within MPMX20_00832at 874.125 kb on - strand, within MPMX20_00832at 874.157 kb on + strand, within MPMX20_00832at 874.166 kb on + strand, within MPMX20_00832at 874.167 kb on + strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.186 kb on + strand, within MPMX20_00832at 874.186 kb on + strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.244 kb on + strand, within MPMX20_00832at 874.271 kb on - strand, within MPMX20_00832at 874.313 kb on - strand, within MPMX20_00832at 874.340 kb on - strand, within MPMX20_00832at 874.355 kb on + strand, within MPMX20_00832at 874.355 kb on + strand, within MPMX20_00832at 874.369 kb on - strand, within MPMX20_00832at 874.370 kb on + strand, within MPMX20_00832at 874.370 kb on + strand, within MPMX20_00832at 874.374 kb on - strand, within MPMX20_00832at 874.378 kb on - strand, within MPMX20_00832at 874.378 kb on - strand, within MPMX20_00832at 874.394 kb on - strand, within MPMX20_00832at 874.404 kb on - strandat 874.434 kb on + strandat 874.480 kb on + strandat 874.510 kb on - strandat 874.528 kb on - strand, within MPMX20_00833at 874.532 kb on + strand, within MPMX20_00833at 874.540 kb on - strand, within MPMX20_00833at 874.559 kb on + strand, within MPMX20_00833at 874.560 kb on + strand, within MPMX20_00833at 874.560 kb on + strand, within MPMX20_00833at 874.676 kb on - strand, within MPMX20_00833at 874.711 kb on - strand, within MPMX20_00833at 874.746 kb on - strand, within MPMX20_00833at 874.756 kb on - strand, within MPMX20_00833at 874.795 kb on - strand, within MPMX20_00833at 874.851 kb on - strand, within MPMX20_00833at 875.007 kb on + strandat 875.029 kb on + strandat 875.037 kb on - strandat 875.037 kb on - strandat 875.061 kb on + strandat 875.071 kb on + strandat 875.071 kb on - strandat 875.079 kb on - strandat 875.079 kb on - strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.138 kb on - strandat 875.138 kb on - strandat 875.138 kb on - strandat 875.138 kb on - strandat 875.171 kb on - strandat 875.199 kb on + strandat 875.214 kb on - strandat 875.280 kb on - strandat 875.324 kb on + strandat 875.324 kb on + strandat 875.324 kb on + strandat 875.326 kb on - strandat 875.332 kb on - strand, within MPMX20_00834at 875.358 kb on - strand, within MPMX20_00834at 875.368 kb on + strand, within MPMX20_00834at 875.375 kb on + strand, within MPMX20_00834at 875.391 kb on + strand, within MPMX20_00834at 875.399 kb on - strand, within MPMX20_00834at 875.414 kb on - strand, within MPMX20_00834at 875.421 kb on + strand, within MPMX20_00834at 875.464 kb on + strand, within MPMX20_00834

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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872,769 - MPMX20_00830 0.66 -1.2
872,895 + MPMX20_00830 0.80 -0.0
872,900 + MPMX20_00830 0.81 +0.8
872,974 - MPMX20_00830 0.89 -0.3
873,047 + +0.4
873,069 + +0.7
873,103 + +1.8
873,111 - +1.8
873,111 - -1.2
873,111 - +1.0
873,113 + -0.5
873,127 + +0.6
873,187 + MPMX20_00831 0.12 -0.6
873,188 - MPMX20_00831 0.12 -1.5
873,195 - MPMX20_00831 0.14 -5.1
873,329 + MPMX20_00831 0.43 -1.3
873,339 - MPMX20_00831 0.46 -3.3
873,364 + MPMX20_00831 0.51 -2.4
873,364 + MPMX20_00831 0.51 -4.4
873,470 - MPMX20_00831 0.74 -4.4
873,470 - MPMX20_00831 0.74 -4.2
873,484 - MPMX20_00831 0.77 -3.4
873,486 - MPMX20_00831 0.78 -2.8
873,596 + -4.5
873,608 + -2.4
873,608 + -0.1
873,616 - -0.4
873,616 - +1.4
873,617 + -2.1
873,650 - +0.1
873,650 - -2.6
873,683 + -3.5
873,691 + -2.2
873,691 - -0.7
873,691 - -1.5
873,693 + -0.6
873,693 + -0.7
873,693 + -1.4
873,737 - -1.4
873,762 - +2.2
873,802 - -0.1
873,826 + -1.1
873,827 + +0.4
873,834 + MPMX20_00832 0.10 -1.9
873,842 + MPMX20_00832 0.11 +0.2
873,930 - MPMX20_00832 0.24 +1.8
873,937 + MPMX20_00832 0.25 -0.2
873,937 + MPMX20_00832 0.25 -0.9
873,937 + MPMX20_00832 0.25 -0.0
873,945 - MPMX20_00832 0.26 +0.8
873,945 - MPMX20_00832 0.26 +1.4
873,945 - MPMX20_00832 0.26 +0.5
873,945 - MPMX20_00832 0.26 +0.2
873,945 - MPMX20_00832 0.26 -0.4
873,945 - MPMX20_00832 0.26 +2.0
873,971 - MPMX20_00832 0.30 -0.5
873,971 - MPMX20_00832 0.30 -1.0
873,971 - MPMX20_00832 0.30 -0.5
873,976 - MPMX20_00832 0.30 +2.6
873,976 - MPMX20_00832 0.30 -0.3
873,981 - MPMX20_00832 0.31 -0.9
873,999 - MPMX20_00832 0.33 -0.9
874,005 + MPMX20_00832 0.34 -0.0
874,007 - MPMX20_00832 0.35 -0.8
874,013 - MPMX20_00832 0.35 +0.6
874,092 - MPMX20_00832 0.47 -2.4
874,112 - MPMX20_00832 0.50 -0.7
874,125 - MPMX20_00832 0.51 +2.5
874,157 + MPMX20_00832 0.56 +0.1
874,166 + MPMX20_00832 0.57 -0.2
874,167 + MPMX20_00832 0.57 -0.0
874,175 - MPMX20_00832 0.58 +0.9
874,175 - MPMX20_00832 0.58 -2.0
874,175 - MPMX20_00832 0.58 +0.3
874,186 + MPMX20_00832 0.60 -1.3
874,186 + MPMX20_00832 0.60 -0.7
874,194 - MPMX20_00832 0.61 +3.3
874,194 - MPMX20_00832 0.61 -2.0
874,194 - MPMX20_00832 0.61 -0.2
874,194 - MPMX20_00832 0.61 -0.7
874,244 + MPMX20_00832 0.68 -1.2
874,271 - MPMX20_00832 0.72 -1.3
874,313 - MPMX20_00832 0.78 +1.5
874,340 - MPMX20_00832 0.82 -0.3
874,355 + MPMX20_00832 0.84 -1.3
874,355 + MPMX20_00832 0.84 -0.3
874,369 - MPMX20_00832 0.86 +3.3
874,370 + MPMX20_00832 0.86 +1.1
874,370 + MPMX20_00832 0.86 +3.2
874,374 - MPMX20_00832 0.87 -0.5
874,378 - MPMX20_00832 0.87 -0.7
874,378 - MPMX20_00832 0.87 +0.2
874,394 - MPMX20_00832 0.90 -1.8
874,404 - +0.9
874,434 + +2.0
874,480 + +1.4
874,510 - -0.2
874,528 - MPMX20_00833 0.13 +0.3
874,532 + MPMX20_00833 0.14 +0.6
874,540 - MPMX20_00833 0.15 +2.0
874,559 + MPMX20_00833 0.18 +2.2
874,560 + MPMX20_00833 0.19 +0.4
874,560 + MPMX20_00833 0.19 +1.1
874,676 - MPMX20_00833 0.39 +1.3
874,711 - MPMX20_00833 0.46 +1.0
874,746 - MPMX20_00833 0.52 +0.2
874,756 - MPMX20_00833 0.54 +0.6
874,795 - MPMX20_00833 0.61 -2.6
874,851 - MPMX20_00833 0.71 -1.0
875,007 + -0.1
875,029 + -0.6
875,037 - -0.2
875,037 - +1.6
875,061 + +0.4
875,071 + +2.7
875,071 - +1.3
875,079 - +0.1
875,079 - -0.6
875,130 + -0.4
875,130 + -0.6
875,130 + +0.2
875,130 + +0.1
875,130 + -0.0
875,130 + +0.0
875,130 + +0.1
875,130 + -0.4
875,130 + -0.2
875,138 - +1.0
875,138 - +1.5
875,138 - +1.6
875,138 - -0.2
875,171 - +0.4
875,199 + +0.4
875,214 - +0.5
875,280 - -0.8
875,324 + -1.0
875,324 + +0.2
875,324 + -2.1
875,326 - -2.8
875,332 - MPMX20_00834 0.10 -0.2
875,358 - MPMX20_00834 0.11 -1.2
875,368 + MPMX20_00834 0.12 -0.4
875,375 + MPMX20_00834 0.12 +1.6
875,391 + MPMX20_00834 0.13 -1.2
875,399 - MPMX20_00834 0.13 +3.3
875,414 - MPMX20_00834 0.14 +1.1
875,421 + MPMX20_00834 0.14 +0.8
875,464 + MPMX20_00834 0.16 +0.6

Or see this region's nucleotide sequence