Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04437

Experiment: Tween 20 (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04436 and MPMX20_04437 are separated by 9 nucleotidesMPMX20_04437 and MPMX20_04438 are separated by 182 nucleotidesMPMX20_04438 and MPMX20_04439 are separated by 30 nucleotides MPMX20_04436: MPMX20_04436 - Fatty acid oxidation complex subunit alpha, at 4,637,980 to 4,640,169 _04436 MPMX20_04437: MPMX20_04437 - 3-ketoacyl-CoA thiolase, at 4,640,179 to 4,641,342 _04437 MPMX20_04438: MPMX20_04438 - NAD(P)H-flavin reductase, at 4,641,525 to 4,642,226 _04438 MPMX20_04439: MPMX20_04439 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,642,257 to 4,643,762 _04439 Position (kb) 4640 4641 4642Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4639.252 kb on + strand, within MPMX20_04436at 4639.302 kb on - strand, within MPMX20_04436at 4639.329 kb on - strand, within MPMX20_04436at 4639.339 kb on - strand, within MPMX20_04436at 4639.340 kb on - strand, within MPMX20_04436at 4639.515 kb on + strand, within MPMX20_04436at 4639.608 kb on + strand, within MPMX20_04436at 4639.627 kb on + strand, within MPMX20_04436at 4639.630 kb on - strand, within MPMX20_04436at 4639.794 kb on - strand, within MPMX20_04436at 4639.838 kb on - strand, within MPMX20_04436at 4639.884 kb on + strand, within MPMX20_04436at 4639.904 kb on + strand, within MPMX20_04436at 4639.904 kb on + strand, within MPMX20_04436at 4640.064 kb on + strandat 4640.088 kb on + strandat 4640.121 kb on - strandat 4640.123 kb on - strandat 4640.140 kb on + strandat 4640.277 kb on + strandat 4640.303 kb on + strand, within MPMX20_04437at 4640.303 kb on - strand, within MPMX20_04437at 4640.308 kb on + strand, within MPMX20_04437at 4640.348 kb on + strand, within MPMX20_04437at 4640.348 kb on + strand, within MPMX20_04437at 4640.348 kb on + strand, within MPMX20_04437at 4640.348 kb on + strand, within MPMX20_04437at 4640.348 kb on + strand, within MPMX20_04437at 4640.348 kb on + strand, within MPMX20_04437at 4640.356 kb on - strand, within MPMX20_04437at 4640.356 kb on - strand, within MPMX20_04437at 4640.356 kb on - strand, within MPMX20_04437at 4640.356 kb on - strand, within MPMX20_04437at 4640.356 kb on - strand, within MPMX20_04437at 4640.356 kb on - strand, within MPMX20_04437at 4640.360 kb on + strand, within MPMX20_04437at 4640.360 kb on + strand, within MPMX20_04437at 4640.368 kb on - strand, within MPMX20_04437at 4640.368 kb on - strand, within MPMX20_04437at 4640.370 kb on + strand, within MPMX20_04437at 4640.509 kb on - strand, within MPMX20_04437at 4640.509 kb on - strand, within MPMX20_04437at 4640.514 kb on - strand, within MPMX20_04437at 4640.519 kb on - strand, within MPMX20_04437at 4640.528 kb on + strand, within MPMX20_04437at 4640.548 kb on + strand, within MPMX20_04437at 4640.581 kb on + strand, within MPMX20_04437at 4640.581 kb on + strand, within MPMX20_04437at 4640.589 kb on - strand, within MPMX20_04437at 4640.589 kb on - strand, within MPMX20_04437at 4640.589 kb on - strand, within MPMX20_04437at 4640.686 kb on - strand, within MPMX20_04437at 4640.795 kb on - strand, within MPMX20_04437at 4640.800 kb on + strand, within MPMX20_04437at 4640.800 kb on + strand, within MPMX20_04437at 4640.842 kb on - strand, within MPMX20_04437at 4640.880 kb on + strand, within MPMX20_04437at 4640.881 kb on - strand, within MPMX20_04437at 4640.896 kb on + strand, within MPMX20_04437at 4640.965 kb on - strand, within MPMX20_04437at 4641.072 kb on - strand, within MPMX20_04437at 4641.100 kb on + strand, within MPMX20_04437at 4641.129 kb on - strand, within MPMX20_04437at 4641.139 kb on + strand, within MPMX20_04437at 4641.231 kb on + strandat 4641.231 kb on + strandat 4641.236 kb on + strandat 4641.239 kb on - strandat 4641.239 kb on - strandat 4641.296 kb on + strandat 4641.296 kb on + strandat 4641.304 kb on - strandat 4641.306 kb on + strandat 4641.307 kb on + strandat 4641.307 kb on + strandat 4641.314 kb on - strandat 4641.327 kb on + strandat 4641.544 kb on + strandat 4642.246 kb on + strandat 4642.246 kb on - strandat 4642.246 kb on - strandat 4642.248 kb on + strandat 4642.256 kb on - strandat 4642.256 kb on - strandat 4642.256 kb on - strandat 4642.256 kb on - strandat 4642.256 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
remove
4,639,252 + MPMX20_04436 0.58 -1.3
4,639,302 - MPMX20_04436 0.60 -0.9
4,639,329 - MPMX20_04436 0.62 -4.0
4,639,339 - MPMX20_04436 0.62 -3.2
4,639,340 - MPMX20_04436 0.62 -1.7
4,639,515 + MPMX20_04436 0.70 -1.5
4,639,608 + MPMX20_04436 0.74 -2.2
4,639,627 + MPMX20_04436 0.75 -3.5
4,639,630 - MPMX20_04436 0.75 -2.3
4,639,794 - MPMX20_04436 0.83 -1.9
4,639,838 - MPMX20_04436 0.85 -3.0
4,639,884 + MPMX20_04436 0.87 -3.1
4,639,904 + MPMX20_04436 0.88 -4.8
4,639,904 + MPMX20_04436 0.88 -3.5
4,640,064 + -2.2
4,640,088 + -1.1
4,640,121 - -2.1
4,640,123 - -3.5
4,640,140 + -2.7
4,640,277 + -2.2
4,640,303 + MPMX20_04437 0.11 -0.3
4,640,303 - MPMX20_04437 0.11 -2.9
4,640,308 + MPMX20_04437 0.11 -3.0
4,640,348 + MPMX20_04437 0.15 -3.5
4,640,348 + MPMX20_04437 0.15 -1.3
4,640,348 + MPMX20_04437 0.15 -3.3
4,640,348 + MPMX20_04437 0.15 -2.1
4,640,348 + MPMX20_04437 0.15 -1.4
4,640,348 + MPMX20_04437 0.15 -1.2
4,640,356 - MPMX20_04437 0.15 -2.2
4,640,356 - MPMX20_04437 0.15 -1.1
4,640,356 - MPMX20_04437 0.15 -3.1
4,640,356 - MPMX20_04437 0.15 -1.0
4,640,356 - MPMX20_04437 0.15 -2.4
4,640,356 - MPMX20_04437 0.15 -2.6
4,640,360 + MPMX20_04437 0.16 -0.8
4,640,360 + MPMX20_04437 0.16 -3.0
4,640,368 - MPMX20_04437 0.16 +0.2
4,640,368 - MPMX20_04437 0.16 -3.6
4,640,370 + MPMX20_04437 0.16 -2.2
4,640,509 - MPMX20_04437 0.28 -1.1
4,640,509 - MPMX20_04437 0.28 -1.3
4,640,514 - MPMX20_04437 0.29 -2.3
4,640,519 - MPMX20_04437 0.29 -3.1
4,640,528 + MPMX20_04437 0.30 -2.2
4,640,548 + MPMX20_04437 0.32 -2.2
4,640,581 + MPMX20_04437 0.35 -1.6
4,640,581 + MPMX20_04437 0.35 -1.2
4,640,589 - MPMX20_04437 0.35 -1.9
4,640,589 - MPMX20_04437 0.35 -4.2
4,640,589 - MPMX20_04437 0.35 -2.8
4,640,686 - MPMX20_04437 0.44 -3.2
4,640,795 - MPMX20_04437 0.53 -2.2
4,640,800 + MPMX20_04437 0.53 -1.3
4,640,800 + MPMX20_04437 0.53 -2.1
4,640,842 - MPMX20_04437 0.57 -2.6
4,640,880 + MPMX20_04437 0.60 -2.1
4,640,881 - MPMX20_04437 0.60 -1.0
4,640,896 + MPMX20_04437 0.62 -2.3
4,640,965 - MPMX20_04437 0.68 -0.2
4,641,072 - MPMX20_04437 0.77 -0.6
4,641,100 + MPMX20_04437 0.79 -3.4
4,641,129 - MPMX20_04437 0.82 -1.0
4,641,139 + MPMX20_04437 0.82 -2.0
4,641,231 + -1.7
4,641,231 + -2.6
4,641,236 + -2.9
4,641,239 - -3.1
4,641,239 - -1.6
4,641,296 + -1.0
4,641,296 + -2.3
4,641,304 - -1.8
4,641,306 + -2.3
4,641,307 + -1.7
4,641,307 + -0.1
4,641,314 - -0.8
4,641,327 + -1.3
4,641,544 + -2.4
4,642,246 + -0.6
4,642,246 - -0.6
4,642,246 - -0.0
4,642,248 + -2.7
4,642,256 - -0.1
4,642,256 - -1.0
4,642,256 - -0.7
4,642,256 - -0.1
4,642,256 - -1.7

Or see this region's nucleotide sequence