Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03769 and MPMX20_03770 are separated by 250 nucleotides MPMX20_03770 and MPMX20_03771 are separated by 45 nucleotides MPMX20_03771 and MPMX20_03772 are separated by 272 nucleotides
MPMX20_03769: MPMX20_03769 - Cell division protein ZapA, at 3,972,678 to 3,973,007
_03769
MPMX20_03770: MPMX20_03770 - 5-formyltetrahydrofolate cyclo-ligase, at 3,973,258 to 3,973,854
_03770
MPMX20_03771: MPMX20_03771 - D-3-phosphoglycerate dehydrogenase, at 3,973,900 to 3,975,132
_03771
MPMX20_03772: MPMX20_03772 - Ribose-5-phosphate isomerase A, at 3,975,405 to 3,976,064
_03772
Position (kb)
3973
3974
3975
3976 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3972.910 kb on + strand, within MPMX20_03769 at 3972.910 kb on + strand, within MPMX20_03769 at 3972.918 kb on - strand, within MPMX20_03769 at 3972.918 kb on - strand, within MPMX20_03769 at 3972.953 kb on + strand, within MPMX20_03769 at 3972.961 kb on - strand, within MPMX20_03769 at 3973.088 kb on - strand at 3973.207 kb on - strand at 3973.342 kb on - strand, within MPMX20_03770 at 3973.388 kb on + strand, within MPMX20_03770 at 3973.417 kb on + strand, within MPMX20_03770 at 3973.470 kb on + strand, within MPMX20_03770 at 3973.547 kb on + strand, within MPMX20_03770 at 3973.547 kb on + strand, within MPMX20_03770 at 3973.555 kb on - strand, within MPMX20_03770 at 3973.557 kb on - strand, within MPMX20_03770 at 3973.639 kb on + strand, within MPMX20_03770 at 3973.762 kb on + strand, within MPMX20_03770 at 3973.767 kb on + strand, within MPMX20_03770 at 3973.841 kb on - strand at 3973.885 kb on - strand at 3973.885 kb on - strand at 3973.916 kb on - strand at 3973.935 kb on - strand at 3973.938 kb on + strand at 3973.946 kb on - strand at 3973.977 kb on - strand at 3974.003 kb on - strand at 3974.006 kb on + strand at 3974.014 kb on - strand at 3974.103 kb on - strand, within MPMX20_03771 at 3974.134 kb on - strand, within MPMX20_03771 at 3974.177 kb on - strand, within MPMX20_03771 at 3974.177 kb on - strand, within MPMX20_03771 at 3974.222 kb on + strand, within MPMX20_03771 at 3974.292 kb on + strand, within MPMX20_03771 at 3974.292 kb on + strand, within MPMX20_03771 at 3974.300 kb on - strand, within MPMX20_03771 at 3974.300 kb on - strand, within MPMX20_03771 at 3974.307 kb on - strand, within MPMX20_03771 at 3974.331 kb on - strand, within MPMX20_03771 at 3974.396 kb on - strand, within MPMX20_03771 at 3974.449 kb on - strand, within MPMX20_03771 at 3974.454 kb on - strand, within MPMX20_03771 at 3974.460 kb on + strand, within MPMX20_03771 at 3974.510 kb on - strand, within MPMX20_03771 at 3974.510 kb on - strand, within MPMX20_03771 at 3974.535 kb on + strand, within MPMX20_03771 at 3974.543 kb on - strand, within MPMX20_03771 at 3974.545 kb on + strand, within MPMX20_03771 at 3974.561 kb on + strand, within MPMX20_03771 at 3974.561 kb on + strand, within MPMX20_03771 at 3974.561 kb on + strand, within MPMX20_03771 at 3974.642 kb on + strand, within MPMX20_03771 at 3974.652 kb on + strand, within MPMX20_03771 at 3974.785 kb on + strand, within MPMX20_03771 at 3974.793 kb on - strand, within MPMX20_03771 at 3974.832 kb on - strand, within MPMX20_03771 at 3974.870 kb on - strand, within MPMX20_03771 at 3974.926 kb on + strand, within MPMX20_03771 at 3974.940 kb on + strand, within MPMX20_03771 at 3975.007 kb on - strand, within MPMX20_03771 at 3975.034 kb on + strand at 3975.047 kb on + strand at 3975.088 kb on - strand at 3975.145 kb on + strand at 3975.191 kb on + strand at 3975.383 kb on + strand at 3975.388 kb on + strand at 3975.393 kb on + strand at 3975.401 kb on - strand at 3975.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 3,972,910 + MPMX20_03769 0.70 +1.0 3,972,910 + MPMX20_03769 0.70 -0.4 3,972,918 - MPMX20_03769 0.73 +0.6 3,972,918 - MPMX20_03769 0.73 +0.1 3,972,953 + MPMX20_03769 0.83 -0.5 3,972,961 - MPMX20_03769 0.86 -0.6 3,973,088 - +0.0 3,973,207 - +0.9 3,973,342 - MPMX20_03770 0.14 -0.6 3,973,388 + MPMX20_03770 0.22 -0.1 3,973,417 + MPMX20_03770 0.27 -0.3 3,973,470 + MPMX20_03770 0.36 -0.6 3,973,547 + MPMX20_03770 0.48 -0.5 3,973,547 + MPMX20_03770 0.48 -0.3 3,973,555 - MPMX20_03770 0.50 -2.2 3,973,557 - MPMX20_03770 0.50 -1.2 3,973,639 + MPMX20_03770 0.64 +0.5 3,973,762 + MPMX20_03770 0.84 -1.8 3,973,767 + MPMX20_03770 0.85 -1.2 3,973,841 - -0.2 3,973,885 - +0.7 3,973,885 - -0.4 3,973,916 - -2.5 3,973,935 - -1.8 3,973,938 + -4.1 3,973,946 - -2.3 3,973,977 - -3.3 3,974,003 - -3.4 3,974,006 + -0.5 3,974,014 - -4.7 3,974,103 - MPMX20_03771 0.16 -3.9 3,974,134 - MPMX20_03771 0.19 -2.8 3,974,177 - MPMX20_03771 0.22 -1.6 3,974,177 - MPMX20_03771 0.22 -5.1 3,974,222 + MPMX20_03771 0.26 -3.9 3,974,292 + MPMX20_03771 0.32 -4.5 3,974,292 + MPMX20_03771 0.32 -2.9 3,974,300 - MPMX20_03771 0.32 -5.0 3,974,300 - MPMX20_03771 0.32 -3.9 3,974,307 - MPMX20_03771 0.33 -5.9 3,974,331 - MPMX20_03771 0.35 -3.8 3,974,396 - MPMX20_03771 0.40 -2.7 3,974,449 - MPMX20_03771 0.45 -3.2 3,974,454 - MPMX20_03771 0.45 -4.1 3,974,460 + MPMX20_03771 0.45 -2.4 3,974,510 - MPMX20_03771 0.49 -1.0 3,974,510 - MPMX20_03771 0.49 -1.5 3,974,535 + MPMX20_03771 0.52 -1.9 3,974,543 - MPMX20_03771 0.52 -4.5 3,974,545 + MPMX20_03771 0.52 -2.9 3,974,561 + MPMX20_03771 0.54 -5.1 3,974,561 + MPMX20_03771 0.54 -2.3 3,974,561 + MPMX20_03771 0.54 -1.2 3,974,642 + MPMX20_03771 0.60 -1.0 3,974,652 + MPMX20_03771 0.61 -3.5 3,974,785 + MPMX20_03771 0.72 -3.0 3,974,793 - MPMX20_03771 0.72 -4.5 3,974,832 - MPMX20_03771 0.76 -4.3 3,974,870 - MPMX20_03771 0.79 -4.8 3,974,926 + MPMX20_03771 0.83 -3.6 3,974,940 + MPMX20_03771 0.84 -5.3 3,975,007 - MPMX20_03771 0.90 -5.1 3,975,034 + -2.2 3,975,047 + -1.4 3,975,088 - -3.3 3,975,145 + -2.5 3,975,191 + -1.0 3,975,383 + -0.1 3,975,388 + -0.3 3,975,393 + +0.5 3,975,401 - -0.0 3,975,425 - +0.3
Or see this region's nucleotide sequence