Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02419 and MPMX20_02420 are separated by 415 nucleotides MPMX20_02420 and MPMX20_02421 are separated by 24 nucleotides MPMX20_02421 and MPMX20_02422 overlap by 11 nucleotides
MPMX20_02419: MPMX20_02419 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,556,176 to 2,556,934
_02419
MPMX20_02420: MPMX20_02420 - Gamma-aminobutyraldehyde dehydrogenase, at 2,557,350 to 2,558,774
_02420
MPMX20_02421: MPMX20_02421 - Inner membrane ABC transporter permease protein YdcV, at 2,558,799 to 2,559,605
_02421
MPMX20_02422: MPMX20_02422 - Inner membrane ABC transporter permease protein YdcU, at 2,559,595 to 2,560,539
_02422
Position (kb)
2557
2558
2559 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.427 kb on + strand, within MPMX20_02419 at 2556.463 kb on - strand, within MPMX20_02419 at 2556.481 kb on + strand, within MPMX20_02419 at 2556.483 kb on + strand, within MPMX20_02419 at 2556.491 kb on - strand, within MPMX20_02419 at 2556.496 kb on - strand, within MPMX20_02419 at 2556.503 kb on + strand, within MPMX20_02419 at 2556.620 kb on - strand, within MPMX20_02419 at 2556.674 kb on - strand, within MPMX20_02419 at 2556.677 kb on + strand, within MPMX20_02419 at 2556.677 kb on + strand, within MPMX20_02419 at 2556.685 kb on - strand, within MPMX20_02419 at 2556.772 kb on + strand, within MPMX20_02419 at 2556.772 kb on + strand, within MPMX20_02419 at 2556.780 kb on - strand, within MPMX20_02419 at 2556.841 kb on - strand, within MPMX20_02419 at 2556.890 kb on + strand at 2556.916 kb on - strand at 2557.073 kb on - strand at 2557.074 kb on - strand at 2557.341 kb on + strand at 2557.348 kb on + strand at 2557.396 kb on - strand at 2557.431 kb on - strand at 2557.433 kb on - strand at 2557.482 kb on - strand at 2557.497 kb on + strand, within MPMX20_02420 at 2557.497 kb on - strand, within MPMX20_02420 at 2557.515 kb on - strand, within MPMX20_02420 at 2557.547 kb on - strand, within MPMX20_02420 at 2557.547 kb on - strand, within MPMX20_02420 at 2557.584 kb on + strand, within MPMX20_02420 at 2557.652 kb on + strand, within MPMX20_02420 at 2557.756 kb on + strand, within MPMX20_02420 at 2557.757 kb on - strand, within MPMX20_02420 at 2557.764 kb on - strand, within MPMX20_02420 at 2557.775 kb on + strand, within MPMX20_02420 at 2557.817 kb on - strand, within MPMX20_02420 at 2557.820 kb on + strand, within MPMX20_02420 at 2557.850 kb on + strand, within MPMX20_02420 at 2557.933 kb on + strand, within MPMX20_02420 at 2557.941 kb on - strand, within MPMX20_02420 at 2557.948 kb on + strand, within MPMX20_02420 at 2557.948 kb on + strand, within MPMX20_02420 at 2558.036 kb on + strand, within MPMX20_02420 at 2558.036 kb on + strand, within MPMX20_02420 at 2558.039 kb on + strand, within MPMX20_02420 at 2558.039 kb on - strand, within MPMX20_02420 at 2558.044 kb on - strand, within MPMX20_02420 at 2558.177 kb on - strand, within MPMX20_02420 at 2558.257 kb on + strand, within MPMX20_02420 at 2558.267 kb on + strand, within MPMX20_02420 at 2558.275 kb on - strand, within MPMX20_02420 at 2558.493 kb on + strand, within MPMX20_02420 at 2558.493 kb on + strand, within MPMX20_02420 at 2558.493 kb on + strand, within MPMX20_02420 at 2558.501 kb on - strand, within MPMX20_02420 at 2558.589 kb on + strand, within MPMX20_02420 at 2558.647 kb on + strand at 2558.655 kb on - strand at 2558.704 kb on + strand at 2558.704 kb on + strand at 2558.704 kb on + strand at 2558.704 kb on + strand at 2558.706 kb on + strand at 2558.712 kb on - strand at 2558.712 kb on - strand at 2558.712 kb on - strand at 2558.776 kb on + strand at 2558.784 kb on - strand at 2558.784 kb on - strand at 2558.786 kb on + strand at 2558.828 kb on - strand at 2558.874 kb on - strand at 2558.874 kb on - strand at 2558.896 kb on - strand, within MPMX20_02421 at 2558.896 kb on - strand, within MPMX20_02421 at 2558.931 kb on - strand, within MPMX20_02421 at 2558.961 kb on + strand, within MPMX20_02421 at 2559.033 kb on - strand, within MPMX20_02421 at 2559.101 kb on - strand, within MPMX20_02421 at 2559.127 kb on - strand, within MPMX20_02421 at 2559.127 kb on - strand, within MPMX20_02421 at 2559.246 kb on - strand, within MPMX20_02421 at 2559.384 kb on - strand, within MPMX20_02421 at 2559.384 kb on - strand, within MPMX20_02421 at 2559.432 kb on - strand, within MPMX20_02421 at 2559.440 kb on + strand, within MPMX20_02421 at 2559.504 kb on + strand, within MPMX20_02421 at 2559.518 kb on - strand, within MPMX20_02421 at 2559.554 kb on + strand at 2559.557 kb on + strand at 2559.587 kb on - strand at 2559.600 kb on - strand at 2559.656 kb on + strand at 2559.665 kb on + strand at 2559.708 kb on + strand, within MPMX20_02422 at 2559.708 kb on + strand, within MPMX20_02422 at 2559.716 kb on - strand, within MPMX20_02422 at 2559.716 kb on - strand, within MPMX20_02422 at 2559.716 kb on - strand, within MPMX20_02422
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 2,556,379 + MPMX20_02419 0.27 +0.2 2,556,379 + MPMX20_02419 0.27 -0.5 2,556,379 + MPMX20_02419 0.27 -1.3 2,556,379 + MPMX20_02419 0.27 +1.2 2,556,427 + MPMX20_02419 0.33 -0.8 2,556,463 - MPMX20_02419 0.38 -0.2 2,556,481 + MPMX20_02419 0.40 +0.4 2,556,483 + MPMX20_02419 0.40 -0.2 2,556,491 - MPMX20_02419 0.42 -0.1 2,556,496 - MPMX20_02419 0.42 -0.3 2,556,503 + MPMX20_02419 0.43 +0.4 2,556,620 - MPMX20_02419 0.58 -1.6 2,556,674 - MPMX20_02419 0.66 -1.7 2,556,677 + MPMX20_02419 0.66 +0.4 2,556,677 + MPMX20_02419 0.66 -0.1 2,556,685 - MPMX20_02419 0.67 -2.9 2,556,772 + MPMX20_02419 0.79 +0.2 2,556,772 + MPMX20_02419 0.79 -0.4 2,556,780 - MPMX20_02419 0.80 +0.3 2,556,841 - MPMX20_02419 0.88 +0.8 2,556,890 + +0.5 2,556,916 - -1.2 2,557,073 - +0.7 2,557,074 - -0.3 2,557,341 + -1.9 2,557,348 + -0.1 2,557,396 - -0.7 2,557,431 - +0.4 2,557,433 - +0.2 2,557,482 - -1.3 2,557,497 + MPMX20_02420 0.10 -0.3 2,557,497 - MPMX20_02420 0.10 -1.9 2,557,515 - MPMX20_02420 0.12 +0.3 2,557,547 - MPMX20_02420 0.14 -0.2 2,557,547 - MPMX20_02420 0.14 +1.0 2,557,584 + MPMX20_02420 0.16 -1.2 2,557,652 + MPMX20_02420 0.21 +2.8 2,557,756 + MPMX20_02420 0.28 -0.1 2,557,757 - MPMX20_02420 0.29 -0.3 2,557,764 - MPMX20_02420 0.29 +0.2 2,557,775 + MPMX20_02420 0.30 -1.1 2,557,817 - MPMX20_02420 0.33 +1.3 2,557,820 + MPMX20_02420 0.33 -0.5 2,557,850 + MPMX20_02420 0.35 -1.0 2,557,933 + MPMX20_02420 0.41 +0.2 2,557,941 - MPMX20_02420 0.41 +0.2 2,557,948 + MPMX20_02420 0.42 +0.7 2,557,948 + MPMX20_02420 0.42 -0.0 2,558,036 + MPMX20_02420 0.48 -0.2 2,558,036 + MPMX20_02420 0.48 -0.1 2,558,039 + MPMX20_02420 0.48 -0.0 2,558,039 - MPMX20_02420 0.48 -0.6 2,558,044 - MPMX20_02420 0.49 +2.4 2,558,177 - MPMX20_02420 0.58 -0.8 2,558,257 + MPMX20_02420 0.64 -3.4 2,558,267 + MPMX20_02420 0.64 +0.0 2,558,275 - MPMX20_02420 0.65 +0.8 2,558,493 + MPMX20_02420 0.80 +0.4 2,558,493 + MPMX20_02420 0.80 +0.3 2,558,493 + MPMX20_02420 0.80 +0.7 2,558,501 - MPMX20_02420 0.81 +1.0 2,558,589 + MPMX20_02420 0.87 -0.6 2,558,647 + +0.9 2,558,655 - -0.2 2,558,704 + -0.2 2,558,704 + +0.2 2,558,704 + +0.4 2,558,704 + +0.2 2,558,706 + +0.8 2,558,712 - +0.7 2,558,712 - -1.1 2,558,712 - +1.0 2,558,776 + +0.2 2,558,784 - +0.2 2,558,784 - +0.2 2,558,786 + -1.3 2,558,828 - +0.5 2,558,874 - +0.4 2,558,874 - +0.4 2,558,896 - MPMX20_02421 0.12 +0.5 2,558,896 - MPMX20_02421 0.12 +1.7 2,558,931 - MPMX20_02421 0.16 -0.4 2,558,961 + MPMX20_02421 0.20 -1.0 2,559,033 - MPMX20_02421 0.29 +1.8 2,559,101 - MPMX20_02421 0.37 +0.2 2,559,127 - MPMX20_02421 0.41 -1.8 2,559,127 - MPMX20_02421 0.41 +0.1 2,559,246 - MPMX20_02421 0.55 -2.3 2,559,384 - MPMX20_02421 0.72 -0.8 2,559,384 - MPMX20_02421 0.72 +0.7 2,559,432 - MPMX20_02421 0.78 -0.1 2,559,440 + MPMX20_02421 0.79 +1.0 2,559,504 + MPMX20_02421 0.87 -0.4 2,559,518 - MPMX20_02421 0.89 +0.1 2,559,554 + +0.5 2,559,557 + +1.4 2,559,587 - -0.2 2,559,600 - -0.2 2,559,656 + +1.1 2,559,665 + +0.5 2,559,708 + MPMX20_02422 0.12 +0.1 2,559,708 + MPMX20_02422 0.12 -0.9 2,559,716 - MPMX20_02422 0.13 -0.3 2,559,716 - MPMX20_02422 0.13 -1.9 2,559,716 - MPMX20_02422 0.13 +0.7
Or see this region's nucleotide sequence