Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02420

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02419 and MPMX20_02420 are separated by 415 nucleotidesMPMX20_02420 and MPMX20_02421 are separated by 24 nucleotidesMPMX20_02421 and MPMX20_02422 overlap by 11 nucleotides MPMX20_02419: MPMX20_02419 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,556,176 to 2,556,934 _02419 MPMX20_02420: MPMX20_02420 - Gamma-aminobutyraldehyde dehydrogenase, at 2,557,350 to 2,558,774 _02420 MPMX20_02421: MPMX20_02421 - Inner membrane ABC transporter permease protein YdcV, at 2,558,799 to 2,559,605 _02421 MPMX20_02422: MPMX20_02422 - Inner membrane ABC transporter permease protein YdcU, at 2,559,595 to 2,560,539 _02422 Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2556.379 kb on + strand, within MPMX20_02419at 2556.379 kb on + strand, within MPMX20_02419at 2556.379 kb on + strand, within MPMX20_02419at 2556.379 kb on + strand, within MPMX20_02419at 2556.427 kb on + strand, within MPMX20_02419at 2556.463 kb on - strand, within MPMX20_02419at 2556.481 kb on + strand, within MPMX20_02419at 2556.483 kb on + strand, within MPMX20_02419at 2556.491 kb on - strand, within MPMX20_02419at 2556.496 kb on - strand, within MPMX20_02419at 2556.503 kb on + strand, within MPMX20_02419at 2556.620 kb on - strand, within MPMX20_02419at 2556.674 kb on - strand, within MPMX20_02419at 2556.677 kb on + strand, within MPMX20_02419at 2556.677 kb on + strand, within MPMX20_02419at 2556.685 kb on - strand, within MPMX20_02419at 2556.772 kb on + strand, within MPMX20_02419at 2556.772 kb on + strand, within MPMX20_02419at 2556.780 kb on - strand, within MPMX20_02419at 2556.841 kb on - strand, within MPMX20_02419at 2556.890 kb on + strandat 2556.916 kb on - strandat 2557.073 kb on - strandat 2557.074 kb on - strandat 2557.341 kb on + strandat 2557.348 kb on + strandat 2557.396 kb on - strandat 2557.431 kb on - strandat 2557.433 kb on - strandat 2557.482 kb on - strandat 2557.497 kb on + strand, within MPMX20_02420at 2557.497 kb on - strand, within MPMX20_02420at 2557.515 kb on - strand, within MPMX20_02420at 2557.547 kb on - strand, within MPMX20_02420at 2557.547 kb on - strand, within MPMX20_02420at 2557.584 kb on + strand, within MPMX20_02420at 2557.652 kb on + strand, within MPMX20_02420at 2557.756 kb on + strand, within MPMX20_02420at 2557.757 kb on - strand, within MPMX20_02420at 2557.764 kb on - strand, within MPMX20_02420at 2557.775 kb on + strand, within MPMX20_02420at 2557.817 kb on - strand, within MPMX20_02420at 2557.820 kb on + strand, within MPMX20_02420at 2557.850 kb on + strand, within MPMX20_02420at 2557.933 kb on + strand, within MPMX20_02420at 2557.941 kb on - strand, within MPMX20_02420at 2557.948 kb on + strand, within MPMX20_02420at 2557.948 kb on + strand, within MPMX20_02420at 2558.036 kb on + strand, within MPMX20_02420at 2558.036 kb on + strand, within MPMX20_02420at 2558.039 kb on + strand, within MPMX20_02420at 2558.039 kb on - strand, within MPMX20_02420at 2558.044 kb on - strand, within MPMX20_02420at 2558.177 kb on - strand, within MPMX20_02420at 2558.257 kb on + strand, within MPMX20_02420at 2558.267 kb on + strand, within MPMX20_02420at 2558.275 kb on - strand, within MPMX20_02420at 2558.493 kb on + strand, within MPMX20_02420at 2558.493 kb on + strand, within MPMX20_02420at 2558.493 kb on + strand, within MPMX20_02420at 2558.501 kb on - strand, within MPMX20_02420at 2558.589 kb on + strand, within MPMX20_02420at 2558.647 kb on + strandat 2558.655 kb on - strandat 2558.704 kb on + strandat 2558.704 kb on + strandat 2558.704 kb on + strandat 2558.704 kb on + strandat 2558.706 kb on + strandat 2558.712 kb on - strandat 2558.712 kb on - strandat 2558.712 kb on - strandat 2558.776 kb on + strandat 2558.784 kb on - strandat 2558.784 kb on - strandat 2558.786 kb on + strandat 2558.828 kb on - strandat 2558.874 kb on - strandat 2558.874 kb on - strandat 2558.896 kb on - strand, within MPMX20_02421at 2558.896 kb on - strand, within MPMX20_02421at 2558.931 kb on - strand, within MPMX20_02421at 2558.961 kb on + strand, within MPMX20_02421at 2559.033 kb on - strand, within MPMX20_02421at 2559.101 kb on - strand, within MPMX20_02421at 2559.127 kb on - strand, within MPMX20_02421at 2559.127 kb on - strand, within MPMX20_02421at 2559.246 kb on - strand, within MPMX20_02421at 2559.384 kb on - strand, within MPMX20_02421at 2559.384 kb on - strand, within MPMX20_02421at 2559.432 kb on - strand, within MPMX20_02421at 2559.440 kb on + strand, within MPMX20_02421at 2559.504 kb on + strand, within MPMX20_02421at 2559.518 kb on - strand, within MPMX20_02421at 2559.554 kb on + strandat 2559.557 kb on + strandat 2559.587 kb on - strandat 2559.600 kb on - strandat 2559.656 kb on + strandat 2559.665 kb on + strandat 2559.708 kb on + strand, within MPMX20_02422at 2559.708 kb on + strand, within MPMX20_02422at 2559.716 kb on - strand, within MPMX20_02422at 2559.716 kb on - strand, within MPMX20_02422at 2559.716 kb on - strand, within MPMX20_02422

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,556,379 + MPMX20_02419 0.27 +0.2
2,556,379 + MPMX20_02419 0.27 -0.5
2,556,379 + MPMX20_02419 0.27 -1.3
2,556,379 + MPMX20_02419 0.27 +1.2
2,556,427 + MPMX20_02419 0.33 -0.8
2,556,463 - MPMX20_02419 0.38 -0.2
2,556,481 + MPMX20_02419 0.40 +0.4
2,556,483 + MPMX20_02419 0.40 -0.2
2,556,491 - MPMX20_02419 0.42 -0.1
2,556,496 - MPMX20_02419 0.42 -0.3
2,556,503 + MPMX20_02419 0.43 +0.4
2,556,620 - MPMX20_02419 0.58 -1.6
2,556,674 - MPMX20_02419 0.66 -1.7
2,556,677 + MPMX20_02419 0.66 +0.4
2,556,677 + MPMX20_02419 0.66 -0.1
2,556,685 - MPMX20_02419 0.67 -2.9
2,556,772 + MPMX20_02419 0.79 +0.2
2,556,772 + MPMX20_02419 0.79 -0.4
2,556,780 - MPMX20_02419 0.80 +0.3
2,556,841 - MPMX20_02419 0.88 +0.8
2,556,890 + +0.5
2,556,916 - -1.2
2,557,073 - +0.7
2,557,074 - -0.3
2,557,341 + -1.9
2,557,348 + -0.1
2,557,396 - -0.7
2,557,431 - +0.4
2,557,433 - +0.2
2,557,482 - -1.3
2,557,497 + MPMX20_02420 0.10 -0.3
2,557,497 - MPMX20_02420 0.10 -1.9
2,557,515 - MPMX20_02420 0.12 +0.3
2,557,547 - MPMX20_02420 0.14 -0.2
2,557,547 - MPMX20_02420 0.14 +1.0
2,557,584 + MPMX20_02420 0.16 -1.2
2,557,652 + MPMX20_02420 0.21 +2.8
2,557,756 + MPMX20_02420 0.28 -0.1
2,557,757 - MPMX20_02420 0.29 -0.3
2,557,764 - MPMX20_02420 0.29 +0.2
2,557,775 + MPMX20_02420 0.30 -1.1
2,557,817 - MPMX20_02420 0.33 +1.3
2,557,820 + MPMX20_02420 0.33 -0.5
2,557,850 + MPMX20_02420 0.35 -1.0
2,557,933 + MPMX20_02420 0.41 +0.2
2,557,941 - MPMX20_02420 0.41 +0.2
2,557,948 + MPMX20_02420 0.42 +0.7
2,557,948 + MPMX20_02420 0.42 -0.0
2,558,036 + MPMX20_02420 0.48 -0.2
2,558,036 + MPMX20_02420 0.48 -0.1
2,558,039 + MPMX20_02420 0.48 -0.0
2,558,039 - MPMX20_02420 0.48 -0.6
2,558,044 - MPMX20_02420 0.49 +2.4
2,558,177 - MPMX20_02420 0.58 -0.8
2,558,257 + MPMX20_02420 0.64 -3.4
2,558,267 + MPMX20_02420 0.64 +0.0
2,558,275 - MPMX20_02420 0.65 +0.8
2,558,493 + MPMX20_02420 0.80 +0.4
2,558,493 + MPMX20_02420 0.80 +0.3
2,558,493 + MPMX20_02420 0.80 +0.7
2,558,501 - MPMX20_02420 0.81 +1.0
2,558,589 + MPMX20_02420 0.87 -0.6
2,558,647 + +0.9
2,558,655 - -0.2
2,558,704 + -0.2
2,558,704 + +0.2
2,558,704 + +0.4
2,558,704 + +0.2
2,558,706 + +0.8
2,558,712 - +0.7
2,558,712 - -1.1
2,558,712 - +1.0
2,558,776 + +0.2
2,558,784 - +0.2
2,558,784 - +0.2
2,558,786 + -1.3
2,558,828 - +0.5
2,558,874 - +0.4
2,558,874 - +0.4
2,558,896 - MPMX20_02421 0.12 +0.5
2,558,896 - MPMX20_02421 0.12 +1.7
2,558,931 - MPMX20_02421 0.16 -0.4
2,558,961 + MPMX20_02421 0.20 -1.0
2,559,033 - MPMX20_02421 0.29 +1.8
2,559,101 - MPMX20_02421 0.37 +0.2
2,559,127 - MPMX20_02421 0.41 -1.8
2,559,127 - MPMX20_02421 0.41 +0.1
2,559,246 - MPMX20_02421 0.55 -2.3
2,559,384 - MPMX20_02421 0.72 -0.8
2,559,384 - MPMX20_02421 0.72 +0.7
2,559,432 - MPMX20_02421 0.78 -0.1
2,559,440 + MPMX20_02421 0.79 +1.0
2,559,504 + MPMX20_02421 0.87 -0.4
2,559,518 - MPMX20_02421 0.89 +0.1
2,559,554 + +0.5
2,559,557 + +1.4
2,559,587 - -0.2
2,559,600 - -0.2
2,559,656 + +1.1
2,559,665 + +0.5
2,559,708 + MPMX20_02422 0.12 +0.1
2,559,708 + MPMX20_02422 0.12 -0.9
2,559,716 - MPMX20_02422 0.13 -0.3
2,559,716 - MPMX20_02422 0.13 -1.9
2,559,716 - MPMX20_02422 0.13 +0.7

Or see this region's nucleotide sequence