Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02267 and MPMX20_02268 overlap by 47 nucleotides MPMX20_02268 and MPMX20_02269 are separated by 99 nucleotides MPMX20_02269 and MPMX20_02270 overlap by 19 nucleotides
MPMX20_02267: MPMX20_02267 - hypothetical protein, at 2,377,938 to 2,378,420
_02267
MPMX20_02268: MPMX20_02268 - HTH-type transcriptional regulator GltR, at 2,378,374 to 2,379,252
_02268
MPMX20_02269: MPMX20_02269 - Succinate semialdehyde dehydrogenase [NAD(P)+] Sad, at 2,379,352 to 2,380,740
_02269
MPMX20_02270: MPMX20_02270 - Methyl-accepting chemotaxis protein I, at 2,380,722 to 2,382,446
_02270
Position (kb)
2379
2380
2381 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2378.372 kb on + strand at 2378.390 kb on + strand at 2378.437 kb on + strand at 2378.437 kb on + strand at 2378.437 kb on + strand at 2378.445 kb on - strand at 2378.445 kb on - strand at 2378.477 kb on - strand, within MPMX20_02268 at 2378.598 kb on + strand, within MPMX20_02268 at 2378.741 kb on - strand, within MPMX20_02268 at 2378.885 kb on - strand, within MPMX20_02268 at 2378.903 kb on + strand, within MPMX20_02268 at 2378.962 kb on - strand, within MPMX20_02268 at 2378.970 kb on - strand, within MPMX20_02268 at 2379.029 kb on + strand, within MPMX20_02268 at 2379.062 kb on + strand, within MPMX20_02268 at 2379.087 kb on - strand, within MPMX20_02268 at 2379.104 kb on + strand, within MPMX20_02268 at 2379.131 kb on + strand, within MPMX20_02268 at 2379.141 kb on + strand, within MPMX20_02268 at 2379.162 kb on - strand, within MPMX20_02268 at 2379.180 kb on + strand at 2379.221 kb on - strand at 2379.229 kb on - strand at 2379.332 kb on - strand at 2379.381 kb on - strand at 2379.383 kb on + strand at 2379.383 kb on + strand at 2379.391 kb on - strand at 2379.391 kb on - strand at 2379.391 kb on - strand at 2379.391 kb on - strand at 2379.392 kb on - strand at 2379.423 kb on - strand at 2379.426 kb on + strand at 2379.426 kb on + strand at 2379.440 kb on + strand at 2379.450 kb on - strand at 2379.481 kb on - strand at 2379.491 kb on - strand, within MPMX20_02269 at 2379.491 kb on - strand, within MPMX20_02269 at 2379.619 kb on - strand, within MPMX20_02269 at 2379.655 kb on - strand, within MPMX20_02269 at 2379.685 kb on - strand, within MPMX20_02269 at 2379.734 kb on + strand, within MPMX20_02269 at 2379.773 kb on + strand, within MPMX20_02269 at 2379.781 kb on - strand, within MPMX20_02269 at 2379.781 kb on - strand, within MPMX20_02269 at 2379.816 kb on - strand, within MPMX20_02269 at 2379.825 kb on + strand, within MPMX20_02269 at 2379.832 kb on - strand, within MPMX20_02269 at 2379.833 kb on - strand, within MPMX20_02269 at 2379.833 kb on - strand, within MPMX20_02269 at 2379.833 kb on - strand, within MPMX20_02269 at 2379.841 kb on + strand, within MPMX20_02269 at 2379.854 kb on + strand, within MPMX20_02269 at 2379.873 kb on + strand, within MPMX20_02269 at 2379.904 kb on + strand, within MPMX20_02269 at 2379.912 kb on - strand, within MPMX20_02269 at 2380.020 kb on + strand, within MPMX20_02269 at 2380.061 kb on + strand, within MPMX20_02269 at 2380.061 kb on + strand, within MPMX20_02269 at 2380.061 kb on + strand, within MPMX20_02269 at 2380.061 kb on + strand, within MPMX20_02269 at 2380.069 kb on - strand, within MPMX20_02269 at 2380.069 kb on - strand, within MPMX20_02269 at 2380.101 kb on - strand, within MPMX20_02269 at 2380.130 kb on - strand, within MPMX20_02269 at 2380.149 kb on + strand, within MPMX20_02269 at 2380.149 kb on + strand, within MPMX20_02269 at 2380.157 kb on - strand, within MPMX20_02269 at 2380.157 kb on - strand, within MPMX20_02269 at 2380.185 kb on + strand, within MPMX20_02269 at 2380.209 kb on + strand, within MPMX20_02269 at 2380.236 kb on + strand, within MPMX20_02269 at 2380.286 kb on + strand, within MPMX20_02269 at 2380.286 kb on + strand, within MPMX20_02269 at 2380.361 kb on - strand, within MPMX20_02269 at 2380.381 kb on + strand, within MPMX20_02269 at 2380.388 kb on + strand, within MPMX20_02269 at 2380.388 kb on + strand, within MPMX20_02269 at 2380.389 kb on - strand, within MPMX20_02269 at 2380.396 kb on - strand, within MPMX20_02269 at 2380.396 kb on - strand, within MPMX20_02269 at 2380.396 kb on - strand, within MPMX20_02269 at 2380.396 kb on - strand, within MPMX20_02269 at 2380.396 kb on - strand, within MPMX20_02269 at 2380.410 kb on + strand, within MPMX20_02269 at 2380.457 kb on - strand, within MPMX20_02269 at 2380.528 kb on - strand, within MPMX20_02269 at 2380.608 kb on - strand at 2380.639 kb on + strand at 2380.709 kb on - strand at 2380.760 kb on - strand at 2380.892 kb on + strand at 2380.894 kb on + strand at 2380.895 kb on + strand, within MPMX20_02270 at 2380.902 kb on - strand, within MPMX20_02270 at 2380.917 kb on - strand, within MPMX20_02270 at 2380.917 kb on - strand, within MPMX20_02270 at 2380.959 kb on - strand, within MPMX20_02270 at 2380.961 kb on + strand, within MPMX20_02270 at 2380.967 kb on - strand, within MPMX20_02270 at 2380.994 kb on + strand, within MPMX20_02270 at 2381.017 kb on - strand, within MPMX20_02270 at 2381.056 kb on - strand, within MPMX20_02270 at 2381.058 kb on + strand, within MPMX20_02270 at 2381.148 kb on - strand, within MPMX20_02270 at 2381.183 kb on - strand, within MPMX20_02270 at 2381.204 kb on + strand, within MPMX20_02270 at 2381.204 kb on + strand, within MPMX20_02270 at 2381.204 kb on + strand, within MPMX20_02270 at 2381.212 kb on - strand, within MPMX20_02270 at 2381.306 kb on + strand, within MPMX20_02270 at 2381.520 kb on - strand, within MPMX20_02270 at 2381.599 kb on - strand, within MPMX20_02270 at 2381.609 kb on - strand, within MPMX20_02270 at 2381.646 kb on - strand, within MPMX20_02270 at 2381.660 kb on - strand, within MPMX20_02270 at 2381.688 kb on + strand, within MPMX20_02270
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 2,378,372 + +0.4 2,378,390 + +1.0 2,378,437 + +0.2 2,378,437 + +0.1 2,378,437 + +0.6 2,378,445 - +0.6 2,378,445 - +0.7 2,378,477 - MPMX20_02268 0.12 +0.5 2,378,598 + MPMX20_02268 0.25 -1.3 2,378,741 - MPMX20_02268 0.42 +0.2 2,378,885 - MPMX20_02268 0.58 -0.8 2,378,903 + MPMX20_02268 0.60 +1.0 2,378,962 - MPMX20_02268 0.67 +0.8 2,378,970 - MPMX20_02268 0.68 -0.5 2,379,029 + MPMX20_02268 0.75 +0.0 2,379,062 + MPMX20_02268 0.78 -1.4 2,379,087 - MPMX20_02268 0.81 +0.2 2,379,104 + MPMX20_02268 0.83 +1.9 2,379,131 + MPMX20_02268 0.86 +1.2 2,379,141 + MPMX20_02268 0.87 -0.7 2,379,162 - MPMX20_02268 0.90 -0.4 2,379,180 + +0.1 2,379,221 - -1.1 2,379,229 - -0.6 2,379,332 - -0.8 2,379,381 - +0.6 2,379,383 + -0.2 2,379,383 + -0.2 2,379,391 - -1.3 2,379,391 - -0.6 2,379,391 - -2.1 2,379,391 - +0.8 2,379,392 - -0.1 2,379,423 - +1.0 2,379,426 + -0.1 2,379,426 + +0.6 2,379,440 + +0.7 2,379,450 - +0.3 2,379,481 - -0.3 2,379,491 - MPMX20_02269 0.10 +0.2 2,379,491 - MPMX20_02269 0.10 +1.4 2,379,619 - MPMX20_02269 0.19 -0.0 2,379,655 - MPMX20_02269 0.22 +0.4 2,379,685 - MPMX20_02269 0.24 +0.8 2,379,734 + MPMX20_02269 0.28 -0.3 2,379,773 + MPMX20_02269 0.30 +0.2 2,379,781 - MPMX20_02269 0.31 +0.8 2,379,781 - MPMX20_02269 0.31 -2.1 2,379,816 - MPMX20_02269 0.33 +0.5 2,379,825 + MPMX20_02269 0.34 +1.0 2,379,832 - MPMX20_02269 0.35 -0.5 2,379,833 - MPMX20_02269 0.35 -0.4 2,379,833 - MPMX20_02269 0.35 -1.3 2,379,833 - MPMX20_02269 0.35 +1.0 2,379,841 + MPMX20_02269 0.35 +1.0 2,379,854 + MPMX20_02269 0.36 +0.3 2,379,873 + MPMX20_02269 0.38 -0.7 2,379,904 + MPMX20_02269 0.40 +1.6 2,379,912 - MPMX20_02269 0.40 +1.2 2,380,020 + MPMX20_02269 0.48 -0.6 2,380,061 + MPMX20_02269 0.51 +0.5 2,380,061 + MPMX20_02269 0.51 +1.2 2,380,061 + MPMX20_02269 0.51 -0.6 2,380,061 + MPMX20_02269 0.51 -2.3 2,380,069 - MPMX20_02269 0.52 -0.2 2,380,069 - MPMX20_02269 0.52 -1.3 2,380,101 - MPMX20_02269 0.54 +0.5 2,380,130 - MPMX20_02269 0.56 +1.0 2,380,149 + MPMX20_02269 0.57 +0.1 2,380,149 + MPMX20_02269 0.57 +0.0 2,380,157 - MPMX20_02269 0.58 +0.0 2,380,157 - MPMX20_02269 0.58 +0.1 2,380,185 + MPMX20_02269 0.60 +1.3 2,380,209 + MPMX20_02269 0.62 +0.6 2,380,236 + MPMX20_02269 0.64 -0.3 2,380,286 + MPMX20_02269 0.67 +2.0 2,380,286 + MPMX20_02269 0.67 +0.2 2,380,361 - MPMX20_02269 0.73 +0.3 2,380,381 + MPMX20_02269 0.74 +0.0 2,380,388 + MPMX20_02269 0.75 -0.2 2,380,388 + MPMX20_02269 0.75 +0.5 2,380,389 - MPMX20_02269 0.75 -0.2 2,380,396 - MPMX20_02269 0.75 +0.2 2,380,396 - MPMX20_02269 0.75 -1.3 2,380,396 - MPMX20_02269 0.75 -0.3 2,380,396 - MPMX20_02269 0.75 +0.8 2,380,396 - MPMX20_02269 0.75 +0.3 2,380,410 + MPMX20_02269 0.76 +0.1 2,380,457 - MPMX20_02269 0.80 +0.1 2,380,528 - MPMX20_02269 0.85 +0.0 2,380,608 - +0.0 2,380,639 + +0.0 2,380,709 - +0.0 2,380,760 - -0.2 2,380,892 + -1.0 2,380,894 + +0.4 2,380,895 + MPMX20_02270 0.10 -0.0 2,380,902 - MPMX20_02270 0.10 -0.8 2,380,917 - MPMX20_02270 0.11 -2.4 2,380,917 - MPMX20_02270 0.11 +1.7 2,380,959 - MPMX20_02270 0.14 -0.3 2,380,961 + MPMX20_02270 0.14 -1.1 2,380,967 - MPMX20_02270 0.14 +0.1 2,380,994 + MPMX20_02270 0.16 +0.4 2,381,017 - MPMX20_02270 0.17 -0.6 2,381,056 - MPMX20_02270 0.19 +0.5 2,381,058 + MPMX20_02270 0.19 +0.7 2,381,148 - MPMX20_02270 0.25 +0.2 2,381,183 - MPMX20_02270 0.27 +0.7 2,381,204 + MPMX20_02270 0.28 -0.0 2,381,204 + MPMX20_02270 0.28 -0.6 2,381,204 + MPMX20_02270 0.28 -1.5 2,381,212 - MPMX20_02270 0.28 -0.5 2,381,306 + MPMX20_02270 0.34 -0.3 2,381,520 - MPMX20_02270 0.46 +0.2 2,381,599 - MPMX20_02270 0.51 +1.6 2,381,609 - MPMX20_02270 0.51 -1.2 2,381,646 - MPMX20_02270 0.54 -1.6 2,381,660 - MPMX20_02270 0.54 -0.2 2,381,688 + MPMX20_02270 0.56 -1.4
Or see this region's nucleotide sequence