Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00910

Experiment: Tween 20 (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00908 and MPMX20_00909 are separated by 41 nucleotidesMPMX20_00909 and MPMX20_00910 are separated by 108 nucleotidesMPMX20_00910 and MPMX20_00911 are separated by 239 nucleotidesMPMX20_00911 and MPMX20_00912 are separated by 46 nucleotides MPMX20_00908: MPMX20_00908 - Glutathione hydrolase-like YwrD proenzyme, at 955,499 to 957,100 _00908 MPMX20_00909: MPMX20_00909 - Omega-amidase YafV, at 957,142 to 957,912 _00909 MPMX20_00910: MPMX20_00910 - Acyl-coenzyme A dehydrogenase, at 958,021 to 960,465 _00910 MPMX20_00911: MPMX20_00911 - Phosphoheptose isomerase, at 960,705 to 961,283 _00911 MPMX20_00912: MPMX20_00912 - Putative glutamine amidotransferase YafJ, at 961,330 to 962,097 _00912 Position (kb) 958 959 960 961Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 957.044 kb on + strandat 957.112 kb on + strandat 957.112 kb on + strandat 957.112 kb on + strandat 957.120 kb on - strandat 957.120 kb on - strandat 957.120 kb on - strandat 957.120 kb on - strandat 957.139 kb on + strandat 957.152 kb on - strandat 957.173 kb on - strandat 957.293 kb on - strand, within MPMX20_00909at 957.419 kb on - strand, within MPMX20_00909at 957.425 kb on + strand, within MPMX20_00909at 957.433 kb on - strand, within MPMX20_00909at 957.512 kb on - strand, within MPMX20_00909at 957.821 kb on - strand, within MPMX20_00909at 957.857 kb on - strandat 957.871 kb on + strandat 957.906 kb on - strandat 957.931 kb on - strandat 957.946 kb on + strandat 957.954 kb on - strandat 958.056 kb on + strandat 958.070 kb on + strandat 958.101 kb on + strandat 958.101 kb on + strandat 958.101 kb on + strandat 958.101 kb on + strandat 958.101 kb on + strandat 958.109 kb on - strandat 958.109 kb on - strandat 958.109 kb on - strandat 958.182 kb on - strandat 958.322 kb on + strand, within MPMX20_00910at 958.469 kb on - strand, within MPMX20_00910at 958.501 kb on + strand, within MPMX20_00910at 958.596 kb on - strand, within MPMX20_00910at 958.611 kb on - strand, within MPMX20_00910at 958.640 kb on + strand, within MPMX20_00910at 958.643 kb on + strand, within MPMX20_00910at 958.673 kb on - strand, within MPMX20_00910at 958.763 kb on - strand, within MPMX20_00910at 958.767 kb on + strand, within MPMX20_00910at 958.808 kb on - strand, within MPMX20_00910at 958.808 kb on - strand, within MPMX20_00910at 958.815 kb on + strand, within MPMX20_00910at 958.816 kb on - strand, within MPMX20_00910at 958.823 kb on - strand, within MPMX20_00910at 958.849 kb on - strand, within MPMX20_00910at 958.879 kb on - strand, within MPMX20_00910at 958.882 kb on - strand, within MPMX20_00910at 958.965 kb on - strand, within MPMX20_00910at 959.045 kb on - strand, within MPMX20_00910at 959.045 kb on - strand, within MPMX20_00910at 959.045 kb on - strand, within MPMX20_00910at 959.148 kb on + strand, within MPMX20_00910at 959.148 kb on + strand, within MPMX20_00910at 959.156 kb on - strand, within MPMX20_00910at 959.156 kb on - strand, within MPMX20_00910at 959.156 kb on - strand, within MPMX20_00910at 959.156 kb on - strand, within MPMX20_00910at 959.194 kb on + strand, within MPMX20_00910at 959.334 kb on + strand, within MPMX20_00910at 959.334 kb on + strand, within MPMX20_00910at 959.334 kb on + strand, within MPMX20_00910at 959.334 kb on + strand, within MPMX20_00910at 959.334 kb on + strand, within MPMX20_00910at 959.334 kb on + strand, within MPMX20_00910at 959.342 kb on - strand, within MPMX20_00910at 959.342 kb on - strand, within MPMX20_00910at 959.508 kb on + strand, within MPMX20_00910at 959.524 kb on - strand, within MPMX20_00910at 959.526 kb on + strand, within MPMX20_00910at 959.583 kb on + strand, within MPMX20_00910at 959.583 kb on + strand, within MPMX20_00910at 959.591 kb on - strand, within MPMX20_00910at 959.592 kb on - strand, within MPMX20_00910at 959.610 kb on + strand, within MPMX20_00910at 959.659 kb on - strand, within MPMX20_00910at 959.665 kb on + strand, within MPMX20_00910at 959.672 kb on - strand, within MPMX20_00910at 959.672 kb on - strand, within MPMX20_00910at 959.676 kb on + strand, within MPMX20_00910at 959.684 kb on - strand, within MPMX20_00910at 959.733 kb on + strand, within MPMX20_00910at 959.741 kb on - strand, within MPMX20_00910at 959.741 kb on - strand, within MPMX20_00910at 959.743 kb on + strand, within MPMX20_00910at 959.751 kb on - strand, within MPMX20_00910at 959.751 kb on - strand, within MPMX20_00910at 959.751 kb on - strand, within MPMX20_00910at 959.799 kb on - strand, within MPMX20_00910at 959.808 kb on + strand, within MPMX20_00910at 959.832 kb on + strand, within MPMX20_00910at 959.849 kb on - strand, within MPMX20_00910at 959.862 kb on - strand, within MPMX20_00910at 959.942 kb on - strand, within MPMX20_00910at 960.032 kb on - strand, within MPMX20_00910at 960.043 kb on + strand, within MPMX20_00910at 960.096 kb on - strand, within MPMX20_00910at 960.122 kb on - strand, within MPMX20_00910at 960.152 kb on + strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.173 kb on + strand, within MPMX20_00910at 960.242 kb on + strandat 960.242 kb on + strandat 960.242 kb on + strandat 960.250 kb on - strandat 960.250 kb on - strandat 960.350 kb on - strandat 960.365 kb on + strandat 960.373 kb on - strandat 960.378 kb on + strandat 960.432 kb on + strandat 960.432 kb on + strandat 960.432 kb on + strandat 960.432 kb on + strandat 960.435 kb on - strandat 960.435 kb on - strandat 960.440 kb on - strandat 960.580 kb on + strandat 960.585 kb on + strandat 960.593 kb on - strandat 960.629 kb on + strandat 960.629 kb on + strandat 960.629 kb on + strandat 960.630 kb on + strandat 960.637 kb on - strandat 960.660 kb on + strandat 960.663 kb on - strandat 960.664 kb on + strandat 960.670 kb on - strandat 960.675 kb on - strandat 961.285 kb on + strandat 961.295 kb on + strandat 961.303 kb on - strandat 961.330 kb on - strandat 961.384 kb on - strandat 961.437 kb on + strand, within MPMX20_00912at 961.456 kb on + strand, within MPMX20_00912at 961.456 kb on + strand, within MPMX20_00912at 961.456 kb on + strand, within MPMX20_00912

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
remove
957,044 + +0.5
957,112 + -0.7
957,112 + +0.1
957,112 + -0.8
957,120 - +0.8
957,120 - +0.0
957,120 - +1.0
957,120 - -1.7
957,139 + +0.5
957,152 - +0.6
957,173 - -1.0
957,293 - MPMX20_00909 0.20 +0.7
957,419 - MPMX20_00909 0.36 -0.4
957,425 + MPMX20_00909 0.37 -1.4
957,433 - MPMX20_00909 0.38 +0.0
957,512 - MPMX20_00909 0.48 +1.0
957,821 - MPMX20_00909 0.88 +0.5
957,857 - +1.8
957,871 + -1.2
957,906 - +0.8
957,931 - +0.9
957,946 + -0.0
957,954 - -0.1
958,056 + +0.2
958,070 + +0.1
958,101 + -2.7
958,101 + -3.2
958,101 + -2.5
958,101 + -3.5
958,101 + -4.0
958,109 - -2.1
958,109 - -2.6
958,109 - -4.3
958,182 - -2.2
958,322 + MPMX20_00910 0.12 -1.9
958,469 - MPMX20_00910 0.18 -3.3
958,501 + MPMX20_00910 0.20 -3.5
958,596 - MPMX20_00910 0.24 -2.9
958,611 - MPMX20_00910 0.24 -1.2
958,640 + MPMX20_00910 0.25 -3.8
958,643 + MPMX20_00910 0.25 -1.1
958,673 - MPMX20_00910 0.27 -3.7
958,763 - MPMX20_00910 0.30 -5.6
958,767 + MPMX20_00910 0.31 -3.4
958,808 - MPMX20_00910 0.32 -2.7
958,808 - MPMX20_00910 0.32 -4.0
958,815 + MPMX20_00910 0.32 -2.3
958,816 - MPMX20_00910 0.33 -2.4
958,823 - MPMX20_00910 0.33 -4.6
958,849 - MPMX20_00910 0.34 -3.2
958,879 - MPMX20_00910 0.35 -3.7
958,882 - MPMX20_00910 0.35 -3.6
958,965 - MPMX20_00910 0.39 -2.7
959,045 - MPMX20_00910 0.42 -2.1
959,045 - MPMX20_00910 0.42 -5.0
959,045 - MPMX20_00910 0.42 -4.9
959,148 + MPMX20_00910 0.46 -2.4
959,148 + MPMX20_00910 0.46 +0.2
959,156 - MPMX20_00910 0.46 -3.8
959,156 - MPMX20_00910 0.46 -2.8
959,156 - MPMX20_00910 0.46 -2.6
959,156 - MPMX20_00910 0.46 -4.6
959,194 + MPMX20_00910 0.48 -3.0
959,334 + MPMX20_00910 0.54 -1.2
959,334 + MPMX20_00910 0.54 -1.2
959,334 + MPMX20_00910 0.54 -4.4
959,334 + MPMX20_00910 0.54 -4.1
959,334 + MPMX20_00910 0.54 -3.5
959,334 + MPMX20_00910 0.54 -2.9
959,342 - MPMX20_00910 0.54 -3.2
959,342 - MPMX20_00910 0.54 -4.2
959,508 + MPMX20_00910 0.61 -1.2
959,524 - MPMX20_00910 0.61 -4.2
959,526 + MPMX20_00910 0.62 -3.5
959,583 + MPMX20_00910 0.64 -2.3
959,583 + MPMX20_00910 0.64 -3.8
959,591 - MPMX20_00910 0.64 -2.5
959,592 - MPMX20_00910 0.64 -0.6
959,610 + MPMX20_00910 0.65 -3.1
959,659 - MPMX20_00910 0.67 -3.7
959,665 + MPMX20_00910 0.67 -1.6
959,672 - MPMX20_00910 0.68 -3.8
959,672 - MPMX20_00910 0.68 -1.2
959,676 + MPMX20_00910 0.68 -3.5
959,684 - MPMX20_00910 0.68 -3.6
959,733 + MPMX20_00910 0.70 -1.8
959,741 - MPMX20_00910 0.70 -3.3
959,741 - MPMX20_00910 0.70 -2.1
959,743 + MPMX20_00910 0.70 -1.4
959,751 - MPMX20_00910 0.71 -4.3
959,751 - MPMX20_00910 0.71 -0.7
959,751 - MPMX20_00910 0.71 -2.5
959,799 - MPMX20_00910 0.73 -2.7
959,808 + MPMX20_00910 0.73 -2.6
959,832 + MPMX20_00910 0.74 -3.2
959,849 - MPMX20_00910 0.75 -3.3
959,862 - MPMX20_00910 0.75 -0.2
959,942 - MPMX20_00910 0.79 -4.7
960,032 - MPMX20_00910 0.82 -4.7
960,043 + MPMX20_00910 0.83 -1.1
960,096 - MPMX20_00910 0.85 -1.8
960,122 - MPMX20_00910 0.86 -3.2
960,152 + MPMX20_00910 0.87 -4.3
960,160 - MPMX20_00910 0.87 -3.9
960,160 - MPMX20_00910 0.87 -1.1
960,160 - MPMX20_00910 0.87 -3.0
960,160 - MPMX20_00910 0.87 -4.1
960,160 - MPMX20_00910 0.87 -3.3
960,160 - MPMX20_00910 0.87 -1.6
960,173 + MPMX20_00910 0.88 -3.4
960,242 + -2.6
960,242 + -3.5
960,242 + -4.7
960,250 - -4.5
960,250 - -1.4
960,350 - -0.8
960,365 + -1.2
960,373 - -2.2
960,378 + -3.5
960,432 + -1.7
960,432 + -1.8
960,432 + -1.1
960,432 + -0.1
960,435 - -3.7
960,435 - -1.8
960,440 - -1.6
960,580 + -0.2
960,585 + -0.0
960,593 - -0.3
960,629 + +0.5
960,629 + -1.3
960,629 + -0.6
960,630 + -2.3
960,637 - -1.0
960,660 + -0.1
960,663 - +0.2
960,664 + +1.6
960,670 - +1.6
960,675 - -1.3
961,285 + +0.3
961,295 + +0.6
961,303 - -0.2
961,330 - -0.8
961,384 - +3.1
961,437 + MPMX20_00912 0.14 +0.6
961,456 + MPMX20_00912 0.16 -1.0
961,456 + MPMX20_00912 0.16 -1.5
961,456 + MPMX20_00912 0.16 -0.1

Or see this region's nucleotide sequence