Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00870

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00869 and MPMX20_00870 are separated by 100 nucleotidesMPMX20_00870 and MPMX20_00871 are separated by 65 nucleotidesMPMX20_00871 and MPMX20_00872 are separated by 57 nucleotides MPMX20_00869: MPMX20_00869 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, at 920,192 to 921,151 _00869 MPMX20_00870: MPMX20_00870 - Constitutive lysine decarboxylase, at 921,252 to 923,384 _00870 MPMX20_00871: MPMX20_00871 - hypothetical protein, at 923,450 to 923,839 _00871 MPMX20_00872: MPMX20_00872 - tRNA(Ile)-lysidine synthase, at 923,897 to 925,183 _00872 Position (kb) 921 922 923 924Strain fitness (log2 ratio) -2 -1 0 1 2at 921.244 kb on + strandat 921.257 kb on + strandat 921.312 kb on + strandat 921.325 kb on + strandat 921.332 kb on + strandat 921.335 kb on - strandat 921.340 kb on + strandat 921.348 kb on - strandat 921.362 kb on + strandat 921.362 kb on + strandat 921.362 kb on + strandat 921.385 kb on - strandat 921.391 kb on + strandat 921.406 kb on + strandat 921.414 kb on - strandat 921.447 kb on - strandat 921.447 kb on - strandat 921.447 kb on - strandat 921.452 kb on - strandat 921.539 kb on - strand, within MPMX20_00870at 921.598 kb on + strand, within MPMX20_00870at 921.606 kb on - strand, within MPMX20_00870at 921.608 kb on + strand, within MPMX20_00870at 921.616 kb on - strand, within MPMX20_00870at 921.642 kb on + strand, within MPMX20_00870at 921.659 kb on + strand, within MPMX20_00870at 921.667 kb on - strand, within MPMX20_00870at 921.678 kb on + strand, within MPMX20_00870at 921.700 kb on - strand, within MPMX20_00870at 921.824 kb on + strand, within MPMX20_00870at 921.830 kb on + strand, within MPMX20_00870at 921.850 kb on - strand, within MPMX20_00870at 921.850 kb on - strand, within MPMX20_00870at 921.887 kb on + strand, within MPMX20_00870at 921.895 kb on - strand, within MPMX20_00870at 921.895 kb on - strand, within MPMX20_00870at 921.897 kb on - strand, within MPMX20_00870at 921.897 kb on - strand, within MPMX20_00870at 921.897 kb on - strand, within MPMX20_00870at 921.918 kb on - strand, within MPMX20_00870at 921.918 kb on - strand, within MPMX20_00870at 921.956 kb on - strand, within MPMX20_00870at 921.990 kb on - strand, within MPMX20_00870at 922.187 kb on - strand, within MPMX20_00870at 922.388 kb on + strand, within MPMX20_00870at 922.396 kb on - strand, within MPMX20_00870at 922.425 kb on + strand, within MPMX20_00870at 922.439 kb on + strand, within MPMX20_00870at 922.447 kb on - strand, within MPMX20_00870at 922.447 kb on - strand, within MPMX20_00870at 922.458 kb on - strand, within MPMX20_00870at 922.582 kb on - strand, within MPMX20_00870at 922.648 kb on - strand, within MPMX20_00870at 922.875 kb on + strand, within MPMX20_00870at 922.875 kb on + strand, within MPMX20_00870at 922.875 kb on + strand, within MPMX20_00870at 922.893 kb on + strand, within MPMX20_00870at 922.901 kb on - strand, within MPMX20_00870at 922.933 kb on + strand, within MPMX20_00870at 922.941 kb on - strand, within MPMX20_00870at 923.016 kb on - strand, within MPMX20_00870at 923.186 kb on + strandat 923.195 kb on + strandat 923.195 kb on + strandat 923.265 kb on - strandat 923.290 kb on + strandat 923.298 kb on - strandat 923.298 kb on - strandat 923.311 kb on - strandat 923.349 kb on + strandat 923.356 kb on + strandat 923.357 kb on + strandat 923.455 kb on + strandat 923.506 kb on + strand, within MPMX20_00871at 923.523 kb on + strand, within MPMX20_00871at 923.528 kb on + strand, within MPMX20_00871at 923.528 kb on + strand, within MPMX20_00871at 923.531 kb on - strand, within MPMX20_00871at 923.536 kb on - strand, within MPMX20_00871at 923.536 kb on - strand, within MPMX20_00871at 923.559 kb on + strand, within MPMX20_00871at 923.567 kb on - strand, within MPMX20_00871at 923.567 kb on - strand, within MPMX20_00871at 923.567 kb on - strand, within MPMX20_00871at 923.620 kb on + strand, within MPMX20_00871at 923.623 kb on + strand, within MPMX20_00871at 923.831 kb on - strandat 923.840 kb on + strandat 923.840 kb on + strandat 923.840 kb on + strandat 923.848 kb on - strandat 923.848 kb on - strandat 923.850 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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921,244 + -0.8
921,257 + +1.4
921,312 + +0.4
921,325 + -0.8
921,332 + -0.6
921,335 - +0.2
921,340 + -0.0
921,348 - -0.6
921,362 + +1.2
921,362 + +0.5
921,362 + -0.0
921,385 - +0.0
921,391 + +0.7
921,406 + +0.9
921,414 - +0.5
921,447 - -0.4
921,447 - -0.8
921,447 - -0.1
921,452 - +0.4
921,539 - MPMX20_00870 0.13 -0.4
921,598 + MPMX20_00870 0.16 +0.2
921,606 - MPMX20_00870 0.17 +0.1
921,608 + MPMX20_00870 0.17 -0.7
921,616 - MPMX20_00870 0.17 +1.6
921,642 + MPMX20_00870 0.18 -0.0
921,659 + MPMX20_00870 0.19 -0.3
921,667 - MPMX20_00870 0.19 +0.6
921,678 + MPMX20_00870 0.20 +0.3
921,700 - MPMX20_00870 0.21 +0.2
921,824 + MPMX20_00870 0.27 +0.5
921,830 + MPMX20_00870 0.27 -0.9
921,850 - MPMX20_00870 0.28 -0.4
921,850 - MPMX20_00870 0.28 -0.2
921,887 + MPMX20_00870 0.30 +0.7
921,895 - MPMX20_00870 0.30 +0.2
921,895 - MPMX20_00870 0.30 +0.6
921,897 - MPMX20_00870 0.30 +0.6
921,897 - MPMX20_00870 0.30 -0.9
921,897 - MPMX20_00870 0.30 +1.4
921,918 - MPMX20_00870 0.31 +1.0
921,918 - MPMX20_00870 0.31 +0.1
921,956 - MPMX20_00870 0.33 -2.1
921,990 - MPMX20_00870 0.35 +0.2
922,187 - MPMX20_00870 0.44 -0.5
922,388 + MPMX20_00870 0.53 -1.8
922,396 - MPMX20_00870 0.54 +0.8
922,425 + MPMX20_00870 0.55 +0.4
922,439 + MPMX20_00870 0.56 -0.4
922,447 - MPMX20_00870 0.56 -0.6
922,447 - MPMX20_00870 0.56 -0.4
922,458 - MPMX20_00870 0.57 -0.5
922,582 - MPMX20_00870 0.62 -0.6
922,648 - MPMX20_00870 0.65 -1.1
922,875 + MPMX20_00870 0.76 -2.3
922,875 + MPMX20_00870 0.76 -0.6
922,875 + MPMX20_00870 0.76 -0.4
922,893 + MPMX20_00870 0.77 +1.0
922,901 - MPMX20_00870 0.77 -2.7
922,933 + MPMX20_00870 0.79 +1.1
922,941 - MPMX20_00870 0.79 +0.4
923,016 - MPMX20_00870 0.83 -0.6
923,186 + -1.0
923,195 + +0.6
923,195 + +0.2
923,265 - +2.5
923,290 + -0.2
923,298 - -0.1
923,298 - -0.7
923,311 - +1.6
923,349 + -0.1
923,356 + +0.2
923,357 + +0.2
923,455 + -0.3
923,506 + MPMX20_00871 0.14 +0.8
923,523 + MPMX20_00871 0.19 +0.6
923,528 + MPMX20_00871 0.20 +0.3
923,528 + MPMX20_00871 0.20 -0.6
923,531 - MPMX20_00871 0.21 +0.8
923,536 - MPMX20_00871 0.22 +0.6
923,536 - MPMX20_00871 0.22 +0.6
923,559 + MPMX20_00871 0.28 +1.8
923,567 - MPMX20_00871 0.30 -0.2
923,567 - MPMX20_00871 0.30 +0.3
923,567 - MPMX20_00871 0.30 +0.2
923,620 + MPMX20_00871 0.44 +0.8
923,623 + MPMX20_00871 0.44 +0.1
923,831 - -1.4
923,840 + +0.3
923,840 + -0.2
923,840 + +0.5
923,848 - +0.4
923,848 - +0.4
923,850 + +0.8

Or see this region's nucleotide sequence