Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00519

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00517 and MPMX20_00518 are separated by 41 nucleotidesMPMX20_00518 and MPMX20_00519 are separated by 336 nucleotidesMPMX20_00519 and MPMX20_00520 are separated by 10 nucleotidesMPMX20_00520 and MPMX20_00521 are separated by 2 nucleotidesMPMX20_00521 and MPMX20_00522 are separated by 22 nucleotides MPMX20_00517: MPMX20_00517 - Metalloprotease PmbA, at 535,102 to 536,454 _00517 MPMX20_00518: MPMX20_00518 - Soluble cytochrome b562, at 536,496 to 536,882 _00518 MPMX20_00519: MPMX20_00519 - hypothetical protein, at 537,219 to 537,539 _00519 MPMX20_00520: MPMX20_00520 - hypothetical protein, at 537,550 to 537,912 _00520 MPMX20_00521: MPMX20_00521 - hypothetical protein, at 537,915 to 538,214 _00521 MPMX20_00522: MPMX20_00522 - hypothetical protein, at 538,237 to 539,013 _00522 Position (kb) 537 538Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 536.286 kb on - strand, within MPMX20_00517at 536.288 kb on + strand, within MPMX20_00517at 536.288 kb on + strand, within MPMX20_00517at 536.290 kb on + strand, within MPMX20_00517at 536.296 kb on - strand, within MPMX20_00517at 536.343 kb on + strandat 536.343 kb on + strandat 536.343 kb on + strandat 536.352 kb on - strandat 536.384 kb on - strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.404 kb on + strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.409 kb on + strandat 536.409 kb on + strandat 536.409 kb on + strandat 536.417 kb on - strandat 536.417 kb on - strandat 536.459 kb on - strandat 536.466 kb on - strandat 536.508 kb on - strandat 536.527 kb on + strandat 536.545 kb on - strand, within MPMX20_00518at 536.545 kb on - strand, within MPMX20_00518at 536.576 kb on + strand, within MPMX20_00518at 536.600 kb on + strand, within MPMX20_00518at 536.608 kb on - strand, within MPMX20_00518at 536.608 kb on - strand, within MPMX20_00518at 536.660 kb on + strand, within MPMX20_00518at 536.733 kb on - strand, within MPMX20_00518at 536.752 kb on + strand, within MPMX20_00518at 536.760 kb on + strand, within MPMX20_00518at 536.760 kb on - strand, within MPMX20_00518at 536.774 kb on + strand, within MPMX20_00518at 536.774 kb on + strand, within MPMX20_00518at 536.782 kb on - strand, within MPMX20_00518at 536.782 kb on - strand, within MPMX20_00518at 536.782 kb on - strand, within MPMX20_00518at 536.784 kb on + strand, within MPMX20_00518at 536.784 kb on + strand, within MPMX20_00518at 536.792 kb on - strand, within MPMX20_00518at 536.820 kb on + strand, within MPMX20_00518at 536.840 kb on + strand, within MPMX20_00518at 536.840 kb on + strand, within MPMX20_00518at 536.848 kb on - strandat 537.012 kb on + strandat 537.020 kb on - strandat 537.088 kb on + strandat 537.090 kb on + strandat 537.093 kb on + strandat 537.093 kb on + strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.104 kb on + strandat 537.104 kb on + strandat 537.104 kb on + strandat 537.119 kb on - strandat 537.196 kb on + strandat 537.216 kb on + strandat 537.224 kb on - strandat 537.224 kb on - strandat 537.242 kb on + strandat 537.250 kb on + strandat 537.260 kb on + strand, within MPMX20_00519at 537.268 kb on - strand, within MPMX20_00519at 537.274 kb on - strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.289 kb on - strand, within MPMX20_00519at 537.291 kb on - strand, within MPMX20_00519at 537.310 kb on - strand, within MPMX20_00519at 537.324 kb on + strand, within MPMX20_00519at 537.351 kb on - strand, within MPMX20_00519at 537.379 kb on + strand, within MPMX20_00519at 537.393 kb on + strand, within MPMX20_00519at 537.398 kb on + strand, within MPMX20_00519at 537.406 kb on - strand, within MPMX20_00519at 537.406 kb on - strand, within MPMX20_00519at 537.499 kb on - strand, within MPMX20_00519at 537.512 kb on + strandat 537.525 kb on + strandat 537.541 kb on - strandat 537.541 kb on - strandat 537.558 kb on + strandat 537.566 kb on - strandat 537.566 kb on - strandat 537.669 kb on - strand, within MPMX20_00520at 537.736 kb on + strand, within MPMX20_00520at 537.738 kb on + strand, within MPMX20_00520at 537.744 kb on - strand, within MPMX20_00520at 537.780 kb on - strand, within MPMX20_00520at 537.786 kb on + strand, within MPMX20_00520at 537.803 kb on - strand, within MPMX20_00520at 537.832 kb on + strand, within MPMX20_00520at 537.840 kb on - strand, within MPMX20_00520at 537.840 kb on - strand, within MPMX20_00520at 537.840 kb on - strand, within MPMX20_00520at 537.846 kb on - strand, within MPMX20_00520at 537.847 kb on - strand, within MPMX20_00520at 537.888 kb on - strandat 537.905 kb on + strandat 537.926 kb on + strandat 537.934 kb on - strandat 537.935 kb on - strandat 537.939 kb on - strandat 537.950 kb on + strand, within MPMX20_00521at 537.950 kb on + strand, within MPMX20_00521at 537.958 kb on - strand, within MPMX20_00521at 537.961 kb on + strand, within MPMX20_00521at 538.000 kb on - strand, within MPMX20_00521at 538.055 kb on + strand, within MPMX20_00521at 538.155 kb on - strand, within MPMX20_00521at 538.188 kb on - strandat 538.230 kb on - strandat 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.346 kb on - strand, within MPMX20_00522at 538.346 kb on - strand, within MPMX20_00522at 538.401 kb on + strand, within MPMX20_00522at 538.414 kb on - strand, within MPMX20_00522at 538.414 kb on - strand, within MPMX20_00522at 538.458 kb on + strand, within MPMX20_00522at 538.472 kb on + strand, within MPMX20_00522at 538.480 kb on - strand, within MPMX20_00522at 538.513 kb on - strand, within MPMX20_00522at 538.538 kb on + strand, within MPMX20_00522

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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536,286 - MPMX20_00517 0.88 -0.9
536,288 + MPMX20_00517 0.88 +2.4
536,288 + MPMX20_00517 0.88 +0.5
536,290 + MPMX20_00517 0.88 -1.2
536,296 - MPMX20_00517 0.88 -1.6
536,343 + -0.3
536,343 + -1.6
536,343 + -2.1
536,352 - -0.8
536,384 - -0.8
536,399 + +0.1
536,399 + -1.0
536,399 + +0.4
536,399 + +0.1
536,399 + +1.0
536,399 + +0.1
536,399 + -0.1
536,399 + -1.4
536,399 + +0.0
536,399 + +1.8
536,399 + -1.5
536,399 + -0.3
536,399 + -1.3
536,404 + -0.5
536,407 - +1.3
536,407 - -0.8
536,407 - -0.4
536,407 - -0.1
536,407 - +0.2
536,407 - -0.4
536,407 - +1.5
536,407 - -0.9
536,407 - -2.5
536,407 - -0.8
536,407 - +0.0
536,409 + -0.5
536,409 + +2.2
536,409 + -1.1
536,417 - +0.8
536,417 - +0.6
536,459 - +0.5
536,466 - +0.3
536,508 - -1.5
536,527 + -0.3
536,545 - MPMX20_00518 0.13 -0.2
536,545 - MPMX20_00518 0.13 -1.2
536,576 + MPMX20_00518 0.21 +0.4
536,600 + MPMX20_00518 0.27 -0.7
536,608 - MPMX20_00518 0.29 -0.3
536,608 - MPMX20_00518 0.29 +0.1
536,660 + MPMX20_00518 0.42 -2.1
536,733 - MPMX20_00518 0.61 +1.4
536,752 + MPMX20_00518 0.66 -0.3
536,760 + MPMX20_00518 0.68 -0.3
536,760 - MPMX20_00518 0.68 +2.3
536,774 + MPMX20_00518 0.72 -0.2
536,774 + MPMX20_00518 0.72 -0.8
536,782 - MPMX20_00518 0.74 +0.3
536,782 - MPMX20_00518 0.74 -1.2
536,782 - MPMX20_00518 0.74 +1.6
536,784 + MPMX20_00518 0.74 +1.4
536,784 + MPMX20_00518 0.74 +0.9
536,792 - MPMX20_00518 0.76 +0.0
536,820 + MPMX20_00518 0.84 -2.1
536,840 + MPMX20_00518 0.89 +0.1
536,840 + MPMX20_00518 0.89 -1.2
536,848 - +0.0
537,012 + -1.9
537,020 - -0.3
537,088 + +3.6
537,090 + +1.5
537,093 + -0.9
537,093 + -0.7
537,101 - -0.9
537,101 - +0.3
537,101 - +1.8
537,101 - -1.6
537,101 - -0.4
537,101 - -0.5
537,101 - +0.9
537,104 + -0.4
537,104 + +0.4
537,104 + -0.7
537,119 - +0.5
537,196 + +0.5
537,216 + -0.5
537,224 - +0.1
537,224 - -1.4
537,242 + -0.8
537,250 + -2.7
537,260 + MPMX20_00519 0.13 -1.7
537,268 - MPMX20_00519 0.15 +0.9
537,274 - MPMX20_00519 0.17 +0.8
537,281 + MPMX20_00519 0.19 -3.4
537,281 + MPMX20_00519 0.19 -3.0
537,281 + MPMX20_00519 0.19 -2.1
537,281 + MPMX20_00519 0.19 -1.6
537,281 + MPMX20_00519 0.19 -1.8
537,281 + MPMX20_00519 0.19 -0.8
537,281 + MPMX20_00519 0.19 -2.2
537,289 - MPMX20_00519 0.22 +2.3
537,291 - MPMX20_00519 0.22 -1.3
537,310 - MPMX20_00519 0.28 -0.8
537,324 + MPMX20_00519 0.33 -0.8
537,351 - MPMX20_00519 0.41 +0.6
537,379 + MPMX20_00519 0.50 -1.7
537,393 + MPMX20_00519 0.54 -2.5
537,398 + MPMX20_00519 0.56 -0.2
537,406 - MPMX20_00519 0.58 -1.3
537,406 - MPMX20_00519 0.58 +0.2
537,499 - MPMX20_00519 0.87 -1.1
537,512 + +1.3
537,525 + +0.1
537,541 - -0.7
537,541 - +0.3
537,558 + +0.2
537,566 - +0.9
537,566 - +1.7
537,669 - MPMX20_00520 0.33 +1.1
537,736 + MPMX20_00520 0.51 -3.1
537,738 + MPMX20_00520 0.52 +0.6
537,744 - MPMX20_00520 0.53 +0.6
537,780 - MPMX20_00520 0.63 -1.7
537,786 + MPMX20_00520 0.65 +0.2
537,803 - MPMX20_00520 0.70 -1.1
537,832 + MPMX20_00520 0.78 -0.4
537,840 - MPMX20_00520 0.80 -1.0
537,840 - MPMX20_00520 0.80 +1.0
537,840 - MPMX20_00520 0.80 -1.0
537,846 - MPMX20_00520 0.82 -2.0
537,847 - MPMX20_00520 0.82 -0.2
537,888 - -0.4
537,905 + -2.5
537,926 + +0.3
537,934 - +0.4
537,935 - -1.1
537,939 - -3.4
537,950 + MPMX20_00521 0.12 +0.5
537,950 + MPMX20_00521 0.12 -1.5
537,958 - MPMX20_00521 0.14 +0.0
537,961 + MPMX20_00521 0.15 +0.6
538,000 - MPMX20_00521 0.28 -0.4
538,055 + MPMX20_00521 0.47 -3.2
538,155 - MPMX20_00521 0.80 +0.9
538,188 - -1.2
538,230 - -1.8
538,338 + MPMX20_00522 0.13 +0.5
538,338 + MPMX20_00522 0.13 +0.7
538,338 + MPMX20_00522 0.13 +0.0
538,338 + MPMX20_00522 0.13 +0.8
538,338 + MPMX20_00522 0.13 +1.1
538,338 + MPMX20_00522 0.13 +0.3
538,338 + MPMX20_00522 0.13 +0.3
538,338 + MPMX20_00522 0.13 +0.2
538,346 - MPMX20_00522 0.14 +0.3
538,346 - MPMX20_00522 0.14 -0.9
538,401 + MPMX20_00522 0.21 -3.0
538,414 - MPMX20_00522 0.23 +2.3
538,414 - MPMX20_00522 0.23 +0.5
538,458 + MPMX20_00522 0.28 +0.6
538,472 + MPMX20_00522 0.30 +0.4
538,480 - MPMX20_00522 0.31 -1.1
538,513 - MPMX20_00522 0.36 +0.3
538,538 + MPMX20_00522 0.39 +2.2

Or see this region's nucleotide sequence