Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00086

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00084 and MPMX20_00085 are separated by 3 nucleotidesMPMX20_00085 and MPMX20_00086 are separated by 4 nucleotidesMPMX20_00086 and MPMX20_00087 are separated by 19 nucleotidesMPMX20_00087 and MPMX20_00088 are separated by 54 nucleotides MPMX20_00084: MPMX20_00084 - ATP-dependent DNA helicase RecG, at 85,957 to 88,038 _00084 MPMX20_00085: MPMX20_00085 - tRNA (guanosine(18)-2'-O)-methyltransferase, at 88,042 to 88,731 _00085 MPMX20_00086: MPMX20_00086 - Bifunctional (p)ppGpp synthase/hydrolase SpoT, at 88,736 to 90,850 _00086 MPMX20_00087: MPMX20_00087 - DNA-directed RNA polymerase subunit omega, at 90,870 to 91,145 _00087 MPMX20_00088: MPMX20_00088 - Guanylate kinase, at 91,200 to 91,823 _00088 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 87.792 kb on - strand, within MPMX20_00084at 87.794 kb on + strand, within MPMX20_00084at 87.816 kb on + strand, within MPMX20_00084at 87.829 kb on + strand, within MPMX20_00084at 87.829 kb on + strand, within MPMX20_00084at 87.829 kb on + strand, within MPMX20_00084at 87.837 kb on - strandat 87.837 kb on - strandat 88.062 kb on - strandat 88.152 kb on - strand, within MPMX20_00085at 88.256 kb on - strand, within MPMX20_00085at 88.284 kb on + strand, within MPMX20_00085at 88.390 kb on + strand, within MPMX20_00085at 88.448 kb on - strand, within MPMX20_00085at 88.599 kb on + strand, within MPMX20_00085at 88.601 kb on + strand, within MPMX20_00085at 88.607 kb on - strand, within MPMX20_00085at 88.607 kb on - strand, within MPMX20_00085at 88.607 kb on - strand, within MPMX20_00085at 88.607 kb on - strand, within MPMX20_00085at 88.607 kb on - strand, within MPMX20_00085at 88.609 kb on - strand, within MPMX20_00085at 88.636 kb on + strand, within MPMX20_00085at 88.656 kb on + strand, within MPMX20_00085at 88.656 kb on + strand, within MPMX20_00085at 88.687 kb on - strandat 88.922 kb on + strandat 88.987 kb on + strand, within MPMX20_00086at 89.012 kb on - strand, within MPMX20_00086at 89.081 kb on - strand, within MPMX20_00086at 89.113 kb on + strand, within MPMX20_00086at 89.146 kb on - strand, within MPMX20_00086at 89.146 kb on - strand, within MPMX20_00086at 89.420 kb on - strand, within MPMX20_00086at 90.887 kb on - strandat 90.887 kb on - strandat 90.977 kb on - strand, within MPMX20_00087at 91.056 kb on + strand, within MPMX20_00087at 91.059 kb on - strand, within MPMX20_00087at 91.064 kb on - strand, within MPMX20_00087at 91.064 kb on - strand, within MPMX20_00087at 91.099 kb on - strand, within MPMX20_00087at 91.099 kb on - strand, within MPMX20_00087at 91.122 kb on + strandat 91.122 kb on + strandat 91.122 kb on + strandat 91.130 kb on - strandat 91.130 kb on - strandat 91.186 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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87,792 - MPMX20_00084 0.88 -1.3
87,794 + MPMX20_00084 0.88 -1.4
87,816 + MPMX20_00084 0.89 -0.3
87,829 + MPMX20_00084 0.90 +0.2
87,829 + MPMX20_00084 0.90 +0.7
87,829 + MPMX20_00084 0.90 -0.5
87,837 - -0.8
87,837 - +1.1
88,062 - -2.2
88,152 - MPMX20_00085 0.16 +0.3
88,256 - MPMX20_00085 0.31 -0.9
88,284 + MPMX20_00085 0.35 +0.7
88,390 + MPMX20_00085 0.50 -1.8
88,448 - MPMX20_00085 0.59 -0.6
88,599 + MPMX20_00085 0.81 +3.1
88,601 + MPMX20_00085 0.81 +0.2
88,607 - MPMX20_00085 0.82 +1.2
88,607 - MPMX20_00085 0.82 -0.3
88,607 - MPMX20_00085 0.82 +0.6
88,607 - MPMX20_00085 0.82 -3.1
88,607 - MPMX20_00085 0.82 -1.3
88,609 - MPMX20_00085 0.82 +0.5
88,636 + MPMX20_00085 0.86 +1.1
88,656 + MPMX20_00085 0.89 -1.4
88,656 + MPMX20_00085 0.89 +1.6
88,687 - -2.8
88,922 + -3.1
88,987 + MPMX20_00086 0.12 -2.4
89,012 - MPMX20_00086 0.13 -1.2
89,081 - MPMX20_00086 0.16 -3.2
89,113 + MPMX20_00086 0.18 -0.7
89,146 - MPMX20_00086 0.19 -3.1
89,146 - MPMX20_00086 0.19 -2.0
89,420 - MPMX20_00086 0.32 -2.7
90,887 - -0.4
90,887 - -0.3
90,977 - MPMX20_00087 0.39 -1.3
91,056 + MPMX20_00087 0.67 -1.7
91,059 - MPMX20_00087 0.68 -0.6
91,064 - MPMX20_00087 0.70 -0.1
91,064 - MPMX20_00087 0.70 -1.6
91,099 - MPMX20_00087 0.83 -0.6
91,099 - MPMX20_00087 0.83 -0.4
91,122 + -3.0
91,122 + -1.2
91,122 + -0.6
91,130 - +0.8
91,130 - +0.6
91,186 + -0.1

Or see this region's nucleotide sequence