Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04597

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04596 and MPMX20_04597 are separated by 11 nucleotidesMPMX20_04597 and MPMX20_04598 are separated by 285 nucleotides MPMX20_04596: MPMX20_04596 - Sensory histidine kinase/phosphatase NtrB, at 4,810,785 to 4,811,834 _04596 MPMX20_04597: MPMX20_04597 - DNA-binding transcriptional regulator NtrC, at 4,811,846 to 4,813,258 _04597 MPMX20_04598: MPMX20_04598 - Oxygen-independent coproporphyrinogen III oxidase, at 4,813,544 to 4,814,917 _04598 Position (kb) 4811 4812 4813 4814Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4810.925 kb on + strand, within MPMX20_04596at 4810.975 kb on + strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.009 kb on - strand, within MPMX20_04596at 4811.033 kb on + strand, within MPMX20_04596at 4811.041 kb on - strand, within MPMX20_04596at 4811.041 kb on - strand, within MPMX20_04596at 4811.089 kb on + strand, within MPMX20_04596at 4811.089 kb on + strand, within MPMX20_04596at 4811.097 kb on - strand, within MPMX20_04596at 4811.191 kb on - strand, within MPMX20_04596at 4811.231 kb on - strand, within MPMX20_04596at 4811.261 kb on + strand, within MPMX20_04596at 4811.261 kb on + strand, within MPMX20_04596at 4811.280 kb on + strand, within MPMX20_04596at 4811.280 kb on + strand, within MPMX20_04596at 4811.280 kb on + strand, within MPMX20_04596at 4811.282 kb on + strand, within MPMX20_04596at 4811.285 kb on + strand, within MPMX20_04596at 4811.344 kb on + strand, within MPMX20_04596at 4811.344 kb on + strand, within MPMX20_04596at 4811.352 kb on - strand, within MPMX20_04596at 4811.352 kb on - strand, within MPMX20_04596at 4811.352 kb on - strand, within MPMX20_04596at 4811.367 kb on - strand, within MPMX20_04596at 4811.434 kb on + strand, within MPMX20_04596at 4811.442 kb on - strand, within MPMX20_04596at 4811.485 kb on + strand, within MPMX20_04596at 4811.581 kb on + strand, within MPMX20_04596at 4811.583 kb on - strand, within MPMX20_04596at 4811.598 kb on - strand, within MPMX20_04596at 4811.670 kb on + strand, within MPMX20_04596at 4811.670 kb on + strand, within MPMX20_04596at 4811.670 kb on + strand, within MPMX20_04596at 4811.674 kb on + strand, within MPMX20_04596at 4811.684 kb on + strand, within MPMX20_04596at 4811.687 kb on - strand, within MPMX20_04596at 4811.692 kb on - strand, within MPMX20_04596at 4811.721 kb on + strand, within MPMX20_04596at 4811.721 kb on + strand, within MPMX20_04596at 4811.722 kb on + strand, within MPMX20_04596at 4811.724 kb on - strand, within MPMX20_04596at 4811.727 kb on + strand, within MPMX20_04596at 4811.729 kb on - strand, within MPMX20_04596at 4811.735 kb on - strandat 4811.735 kb on - strandat 4811.796 kb on - strandat 4811.796 kb on - strandat 4811.844 kb on - strandat 4811.860 kb on + strandat 4811.878 kb on + strandat 4811.886 kb on - strandat 4811.924 kb on + strandat 4811.924 kb on + strandat 4811.924 kb on + strandat 4811.924 kb on + strandat 4811.924 kb on + strandat 4811.924 kb on + strandat 4811.924 kb on + strandat 4811.924 kb on + strandat 4811.932 kb on - strandat 4811.932 kb on - strandat 4811.932 kb on - strandat 4811.932 kb on - strandat 4811.932 kb on - strandat 4811.932 kb on - strandat 4811.932 kb on - strandat 4812.038 kb on - strand, within MPMX20_04597at 4812.039 kb on + strand, within MPMX20_04597at 4812.424 kb on - strand, within MPMX20_04597at 4812.438 kb on - strand, within MPMX20_04597at 4812.525 kb on + strand, within MPMX20_04597at 4812.535 kb on + strand, within MPMX20_04597at 4812.535 kb on + strand, within MPMX20_04597at 4812.543 kb on - strand, within MPMX20_04597at 4812.578 kb on - strand, within MPMX20_04597at 4812.587 kb on + strand, within MPMX20_04597at 4812.595 kb on - strand, within MPMX20_04597at 4812.595 kb on - strand, within MPMX20_04597at 4812.595 kb on - strand, within MPMX20_04597at 4812.716 kb on + strand, within MPMX20_04597at 4812.744 kb on + strand, within MPMX20_04597at 4812.842 kb on - strand, within MPMX20_04597at 4812.860 kb on + strand, within MPMX20_04597at 4812.876 kb on - strand, within MPMX20_04597at 4812.884 kb on + strand, within MPMX20_04597at 4812.884 kb on + strand, within MPMX20_04597at 4812.892 kb on - strand, within MPMX20_04597at 4812.893 kb on + strand, within MPMX20_04597at 4812.936 kb on + strand, within MPMX20_04597at 4812.956 kb on - strand, within MPMX20_04597at 4813.048 kb on + strand, within MPMX20_04597at 4813.098 kb on - strand, within MPMX20_04597at 4813.108 kb on - strand, within MPMX20_04597at 4813.145 kb on + strandat 4813.147 kb on + strandat 4813.152 kb on + strandat 4813.153 kb on - strandat 4813.153 kb on - strandat 4813.153 kb on - strandat 4813.153 kb on - strandat 4813.258 kb on + strandat 4813.259 kb on + strandat 4813.270 kb on + strandat 4813.270 kb on + strandat 4813.278 kb on - strandat 4813.408 kb on + strandat 4813.416 kb on - strandat 4813.416 kb on - strandat 4813.439 kb on + strandat 4813.447 kb on - strandat 4813.447 kb on - strandat 4813.461 kb on + strandat 4813.509 kb on + strandat 4813.643 kb on + strandat 4813.702 kb on + strand, within MPMX20_04598at 4813.749 kb on + strand, within MPMX20_04598at 4813.839 kb on - strand, within MPMX20_04598at 4813.902 kb on - strand, within MPMX20_04598at 4813.965 kb on - strand, within MPMX20_04598at 4813.967 kb on + strand, within MPMX20_04598at 4813.972 kb on + strand, within MPMX20_04598at 4813.975 kb on - strand, within MPMX20_04598at 4813.976 kb on + strand, within MPMX20_04598at 4814.007 kb on + strand, within MPMX20_04598at 4814.007 kb on + strand, within MPMX20_04598at 4814.131 kb on - strand, within MPMX20_04598at 4814.258 kb on + strand, within MPMX20_04598

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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4,810,925 + MPMX20_04596 0.13 -0.1
4,810,975 + MPMX20_04596 0.18 +0.8
4,811,009 - MPMX20_04596 0.21 -2.6
4,811,009 - MPMX20_04596 0.21 -0.2
4,811,009 - MPMX20_04596 0.21 -1.0
4,811,009 - MPMX20_04596 0.21 +0.5
4,811,009 - MPMX20_04596 0.21 +0.3
4,811,009 - MPMX20_04596 0.21 -0.1
4,811,033 + MPMX20_04596 0.24 -0.4
4,811,041 - MPMX20_04596 0.24 +0.3
4,811,041 - MPMX20_04596 0.24 -0.7
4,811,089 + MPMX20_04596 0.29 -0.1
4,811,089 + MPMX20_04596 0.29 -0.2
4,811,097 - MPMX20_04596 0.30 +2.0
4,811,191 - MPMX20_04596 0.39 +0.0
4,811,231 - MPMX20_04596 0.42 +0.3
4,811,261 + MPMX20_04596 0.45 +0.7
4,811,261 + MPMX20_04596 0.45 +0.3
4,811,280 + MPMX20_04596 0.47 +0.6
4,811,280 + MPMX20_04596 0.47 -1.3
4,811,280 + MPMX20_04596 0.47 -1.3
4,811,282 + MPMX20_04596 0.47 -1.0
4,811,285 + MPMX20_04596 0.48 -0.6
4,811,344 + MPMX20_04596 0.53 -0.8
4,811,344 + MPMX20_04596 0.53 +0.1
4,811,352 - MPMX20_04596 0.54 +0.4
4,811,352 - MPMX20_04596 0.54 -0.7
4,811,352 - MPMX20_04596 0.54 -0.6
4,811,367 - MPMX20_04596 0.55 +0.0
4,811,434 + MPMX20_04596 0.62 -0.2
4,811,442 - MPMX20_04596 0.63 -1.1
4,811,485 + MPMX20_04596 0.67 -1.4
4,811,581 + MPMX20_04596 0.76 -0.7
4,811,583 - MPMX20_04596 0.76 +0.3
4,811,598 - MPMX20_04596 0.77 -0.3
4,811,670 + MPMX20_04596 0.84 -0.6
4,811,670 + MPMX20_04596 0.84 -0.9
4,811,670 + MPMX20_04596 0.84 +1.1
4,811,674 + MPMX20_04596 0.85 -0.7
4,811,684 + MPMX20_04596 0.86 -1.0
4,811,687 - MPMX20_04596 0.86 +0.9
4,811,692 - MPMX20_04596 0.86 +1.7
4,811,721 + MPMX20_04596 0.89 +0.3
4,811,721 + MPMX20_04596 0.89 -1.1
4,811,722 + MPMX20_04596 0.89 -2.7
4,811,724 - MPMX20_04596 0.89 -0.7
4,811,727 + MPMX20_04596 0.90 -1.9
4,811,729 - MPMX20_04596 0.90 +0.6
4,811,735 - -0.5
4,811,735 - -0.1
4,811,796 - -0.9
4,811,796 - +0.9
4,811,844 - -1.1
4,811,860 + +0.1
4,811,878 + +1.7
4,811,886 - -2.0
4,811,924 + -1.4
4,811,924 + -0.1
4,811,924 + -1.4
4,811,924 + +0.3
4,811,924 + -0.7
4,811,924 + +2.5
4,811,924 + -0.8
4,811,924 + -2.3
4,811,932 - -2.2
4,811,932 - -1.4
4,811,932 - -0.6
4,811,932 - -2.0
4,811,932 - -0.9
4,811,932 - +0.1
4,811,932 - -2.2
4,812,038 - MPMX20_04597 0.14 -1.4
4,812,039 + MPMX20_04597 0.14 -1.4
4,812,424 - MPMX20_04597 0.41 -1.5
4,812,438 - MPMX20_04597 0.42 -0.9
4,812,525 + MPMX20_04597 0.48 +0.1
4,812,535 + MPMX20_04597 0.49 -0.3
4,812,535 + MPMX20_04597 0.49 -3.1
4,812,543 - MPMX20_04597 0.49 -0.6
4,812,578 - MPMX20_04597 0.52 +0.7
4,812,587 + MPMX20_04597 0.52 -1.3
4,812,595 - MPMX20_04597 0.53 -2.6
4,812,595 - MPMX20_04597 0.53 -1.4
4,812,595 - MPMX20_04597 0.53 -3.7
4,812,716 + MPMX20_04597 0.62 -2.6
4,812,744 + MPMX20_04597 0.64 -2.2
4,812,842 - MPMX20_04597 0.70 -0.3
4,812,860 + MPMX20_04597 0.72 -1.4
4,812,876 - MPMX20_04597 0.73 -1.5
4,812,884 + MPMX20_04597 0.73 +1.3
4,812,884 + MPMX20_04597 0.73 -2.0
4,812,892 - MPMX20_04597 0.74 -0.6
4,812,893 + MPMX20_04597 0.74 -1.7
4,812,936 + MPMX20_04597 0.77 -1.7
4,812,956 - MPMX20_04597 0.79 -1.5
4,813,048 + MPMX20_04597 0.85 -0.7
4,813,098 - MPMX20_04597 0.89 -1.6
4,813,108 - MPMX20_04597 0.89 -1.4
4,813,145 + -1.5
4,813,147 + +1.9
4,813,152 + -0.1
4,813,153 - -0.3
4,813,153 - -2.0
4,813,153 - -0.8
4,813,153 - -1.4
4,813,258 + +0.8
4,813,259 + +2.1
4,813,270 + -0.1
4,813,270 + +0.1
4,813,278 - +0.3
4,813,408 + -0.1
4,813,416 - -1.1
4,813,416 - -0.7
4,813,439 + +1.0
4,813,447 - -0.8
4,813,447 - -0.1
4,813,461 + +0.2
4,813,509 + -0.2
4,813,643 + -1.3
4,813,702 + MPMX20_04598 0.11 -0.3
4,813,749 + MPMX20_04598 0.15 -1.7
4,813,839 - MPMX20_04598 0.21 +1.8
4,813,902 - MPMX20_04598 0.26 -1.4
4,813,965 - MPMX20_04598 0.31 -0.1
4,813,967 + MPMX20_04598 0.31 -1.1
4,813,972 + MPMX20_04598 0.31 -2.1
4,813,975 - MPMX20_04598 0.31 +0.9
4,813,976 + MPMX20_04598 0.31 -1.2
4,814,007 + MPMX20_04598 0.34 -1.7
4,814,007 + MPMX20_04598 0.34 +0.0
4,814,131 - MPMX20_04598 0.43 -0.3
4,814,258 + MPMX20_04598 0.52 +0.0

Or see this region's nucleotide sequence