Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04596 and MPMX20_04597 are separated by 11 nucleotides MPMX20_04597 and MPMX20_04598 are separated by 285 nucleotides
MPMX20_04596: MPMX20_04596 - Sensory histidine kinase/phosphatase NtrB, at 4,810,785 to 4,811,834
_04596
MPMX20_04597: MPMX20_04597 - DNA-binding transcriptional regulator NtrC, at 4,811,846 to 4,813,258
_04597
MPMX20_04598: MPMX20_04598 - Oxygen-independent coproporphyrinogen III oxidase, at 4,813,544 to 4,814,917
_04598
Position (kb)
4811
4812
4813
4814 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4810.925 kb on + strand, within MPMX20_04596 at 4810.975 kb on + strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.009 kb on - strand, within MPMX20_04596 at 4811.033 kb on + strand, within MPMX20_04596 at 4811.041 kb on - strand, within MPMX20_04596 at 4811.041 kb on - strand, within MPMX20_04596 at 4811.089 kb on + strand, within MPMX20_04596 at 4811.089 kb on + strand, within MPMX20_04596 at 4811.097 kb on - strand, within MPMX20_04596 at 4811.191 kb on - strand, within MPMX20_04596 at 4811.231 kb on - strand, within MPMX20_04596 at 4811.261 kb on + strand, within MPMX20_04596 at 4811.261 kb on + strand, within MPMX20_04596 at 4811.280 kb on + strand, within MPMX20_04596 at 4811.280 kb on + strand, within MPMX20_04596 at 4811.280 kb on + strand, within MPMX20_04596 at 4811.282 kb on + strand, within MPMX20_04596 at 4811.285 kb on + strand, within MPMX20_04596 at 4811.344 kb on + strand, within MPMX20_04596 at 4811.344 kb on + strand, within MPMX20_04596 at 4811.352 kb on - strand, within MPMX20_04596 at 4811.352 kb on - strand, within MPMX20_04596 at 4811.352 kb on - strand, within MPMX20_04596 at 4811.367 kb on - strand, within MPMX20_04596 at 4811.434 kb on + strand, within MPMX20_04596 at 4811.442 kb on - strand, within MPMX20_04596 at 4811.485 kb on + strand, within MPMX20_04596 at 4811.581 kb on + strand, within MPMX20_04596 at 4811.583 kb on - strand, within MPMX20_04596 at 4811.598 kb on - strand, within MPMX20_04596 at 4811.670 kb on + strand, within MPMX20_04596 at 4811.670 kb on + strand, within MPMX20_04596 at 4811.670 kb on + strand, within MPMX20_04596 at 4811.674 kb on + strand, within MPMX20_04596 at 4811.684 kb on + strand, within MPMX20_04596 at 4811.687 kb on - strand, within MPMX20_04596 at 4811.692 kb on - strand, within MPMX20_04596 at 4811.721 kb on + strand, within MPMX20_04596 at 4811.721 kb on + strand, within MPMX20_04596 at 4811.722 kb on + strand, within MPMX20_04596 at 4811.724 kb on - strand, within MPMX20_04596 at 4811.727 kb on + strand, within MPMX20_04596 at 4811.729 kb on - strand, within MPMX20_04596 at 4811.735 kb on - strand at 4811.735 kb on - strand at 4811.796 kb on - strand at 4811.796 kb on - strand at 4811.844 kb on - strand at 4811.860 kb on + strand at 4811.878 kb on + strand at 4811.886 kb on - strand at 4811.924 kb on + strand at 4811.924 kb on + strand at 4811.924 kb on + strand at 4811.924 kb on + strand at 4811.924 kb on + strand at 4811.924 kb on + strand at 4811.924 kb on + strand at 4811.924 kb on + strand at 4811.932 kb on - strand at 4811.932 kb on - strand at 4811.932 kb on - strand at 4811.932 kb on - strand at 4811.932 kb on - strand at 4811.932 kb on - strand at 4811.932 kb on - strand at 4812.038 kb on - strand, within MPMX20_04597 at 4812.039 kb on + strand, within MPMX20_04597 at 4812.424 kb on - strand, within MPMX20_04597 at 4812.438 kb on - strand, within MPMX20_04597 at 4812.525 kb on + strand, within MPMX20_04597 at 4812.535 kb on + strand, within MPMX20_04597 at 4812.535 kb on + strand, within MPMX20_04597 at 4812.543 kb on - strand, within MPMX20_04597 at 4812.578 kb on - strand, within MPMX20_04597 at 4812.587 kb on + strand, within MPMX20_04597 at 4812.595 kb on - strand, within MPMX20_04597 at 4812.595 kb on - strand, within MPMX20_04597 at 4812.595 kb on - strand, within MPMX20_04597 at 4812.716 kb on + strand, within MPMX20_04597 at 4812.744 kb on + strand, within MPMX20_04597 at 4812.842 kb on - strand, within MPMX20_04597 at 4812.860 kb on + strand, within MPMX20_04597 at 4812.876 kb on - strand, within MPMX20_04597 at 4812.884 kb on + strand, within MPMX20_04597 at 4812.884 kb on + strand, within MPMX20_04597 at 4812.892 kb on - strand, within MPMX20_04597 at 4812.893 kb on + strand, within MPMX20_04597 at 4812.936 kb on + strand, within MPMX20_04597 at 4812.956 kb on - strand, within MPMX20_04597 at 4813.048 kb on + strand, within MPMX20_04597 at 4813.098 kb on - strand, within MPMX20_04597 at 4813.108 kb on - strand, within MPMX20_04597 at 4813.145 kb on + strand at 4813.147 kb on + strand at 4813.152 kb on + strand at 4813.153 kb on - strand at 4813.153 kb on - strand at 4813.153 kb on - strand at 4813.153 kb on - strand at 4813.258 kb on + strand at 4813.259 kb on + strand at 4813.270 kb on + strand at 4813.270 kb on + strand at 4813.278 kb on - strand at 4813.408 kb on + strand at 4813.416 kb on - strand at 4813.416 kb on - strand at 4813.439 kb on + strand at 4813.447 kb on - strand at 4813.447 kb on - strand at 4813.461 kb on + strand at 4813.509 kb on + strand at 4813.643 kb on + strand at 4813.702 kb on + strand, within MPMX20_04598 at 4813.749 kb on + strand, within MPMX20_04598 at 4813.839 kb on - strand, within MPMX20_04598 at 4813.902 kb on - strand, within MPMX20_04598 at 4813.965 kb on - strand, within MPMX20_04598 at 4813.967 kb on + strand, within MPMX20_04598 at 4813.972 kb on + strand, within MPMX20_04598 at 4813.975 kb on - strand, within MPMX20_04598 at 4813.976 kb on + strand, within MPMX20_04598 at 4814.007 kb on + strand, within MPMX20_04598 at 4814.007 kb on + strand, within MPMX20_04598 at 4814.131 kb on - strand, within MPMX20_04598 at 4814.258 kb on + strand, within MPMX20_04598
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 4,810,925 + MPMX20_04596 0.13 -0.1 4,810,975 + MPMX20_04596 0.18 +0.8 4,811,009 - MPMX20_04596 0.21 -2.6 4,811,009 - MPMX20_04596 0.21 -0.2 4,811,009 - MPMX20_04596 0.21 -1.0 4,811,009 - MPMX20_04596 0.21 +0.5 4,811,009 - MPMX20_04596 0.21 +0.3 4,811,009 - MPMX20_04596 0.21 -0.1 4,811,033 + MPMX20_04596 0.24 -0.4 4,811,041 - MPMX20_04596 0.24 +0.3 4,811,041 - MPMX20_04596 0.24 -0.7 4,811,089 + MPMX20_04596 0.29 -0.1 4,811,089 + MPMX20_04596 0.29 -0.2 4,811,097 - MPMX20_04596 0.30 +2.0 4,811,191 - MPMX20_04596 0.39 +0.0 4,811,231 - MPMX20_04596 0.42 +0.3 4,811,261 + MPMX20_04596 0.45 +0.7 4,811,261 + MPMX20_04596 0.45 +0.3 4,811,280 + MPMX20_04596 0.47 +0.6 4,811,280 + MPMX20_04596 0.47 -1.3 4,811,280 + MPMX20_04596 0.47 -1.3 4,811,282 + MPMX20_04596 0.47 -1.0 4,811,285 + MPMX20_04596 0.48 -0.6 4,811,344 + MPMX20_04596 0.53 -0.8 4,811,344 + MPMX20_04596 0.53 +0.1 4,811,352 - MPMX20_04596 0.54 +0.4 4,811,352 - MPMX20_04596 0.54 -0.7 4,811,352 - MPMX20_04596 0.54 -0.6 4,811,367 - MPMX20_04596 0.55 +0.0 4,811,434 + MPMX20_04596 0.62 -0.2 4,811,442 - MPMX20_04596 0.63 -1.1 4,811,485 + MPMX20_04596 0.67 -1.4 4,811,581 + MPMX20_04596 0.76 -0.7 4,811,583 - MPMX20_04596 0.76 +0.3 4,811,598 - MPMX20_04596 0.77 -0.3 4,811,670 + MPMX20_04596 0.84 -0.6 4,811,670 + MPMX20_04596 0.84 -0.9 4,811,670 + MPMX20_04596 0.84 +1.1 4,811,674 + MPMX20_04596 0.85 -0.7 4,811,684 + MPMX20_04596 0.86 -1.0 4,811,687 - MPMX20_04596 0.86 +0.9 4,811,692 - MPMX20_04596 0.86 +1.7 4,811,721 + MPMX20_04596 0.89 +0.3 4,811,721 + MPMX20_04596 0.89 -1.1 4,811,722 + MPMX20_04596 0.89 -2.7 4,811,724 - MPMX20_04596 0.89 -0.7 4,811,727 + MPMX20_04596 0.90 -1.9 4,811,729 - MPMX20_04596 0.90 +0.6 4,811,735 - -0.5 4,811,735 - -0.1 4,811,796 - -0.9 4,811,796 - +0.9 4,811,844 - -1.1 4,811,860 + +0.1 4,811,878 + +1.7 4,811,886 - -2.0 4,811,924 + -1.4 4,811,924 + -0.1 4,811,924 + -1.4 4,811,924 + +0.3 4,811,924 + -0.7 4,811,924 + +2.5 4,811,924 + -0.8 4,811,924 + -2.3 4,811,932 - -2.2 4,811,932 - -1.4 4,811,932 - -0.6 4,811,932 - -2.0 4,811,932 - -0.9 4,811,932 - +0.1 4,811,932 - -2.2 4,812,038 - MPMX20_04597 0.14 -1.4 4,812,039 + MPMX20_04597 0.14 -1.4 4,812,424 - MPMX20_04597 0.41 -1.5 4,812,438 - MPMX20_04597 0.42 -0.9 4,812,525 + MPMX20_04597 0.48 +0.1 4,812,535 + MPMX20_04597 0.49 -0.3 4,812,535 + MPMX20_04597 0.49 -3.1 4,812,543 - MPMX20_04597 0.49 -0.6 4,812,578 - MPMX20_04597 0.52 +0.7 4,812,587 + MPMX20_04597 0.52 -1.3 4,812,595 - MPMX20_04597 0.53 -2.6 4,812,595 - MPMX20_04597 0.53 -1.4 4,812,595 - MPMX20_04597 0.53 -3.7 4,812,716 + MPMX20_04597 0.62 -2.6 4,812,744 + MPMX20_04597 0.64 -2.2 4,812,842 - MPMX20_04597 0.70 -0.3 4,812,860 + MPMX20_04597 0.72 -1.4 4,812,876 - MPMX20_04597 0.73 -1.5 4,812,884 + MPMX20_04597 0.73 +1.3 4,812,884 + MPMX20_04597 0.73 -2.0 4,812,892 - MPMX20_04597 0.74 -0.6 4,812,893 + MPMX20_04597 0.74 -1.7 4,812,936 + MPMX20_04597 0.77 -1.7 4,812,956 - MPMX20_04597 0.79 -1.5 4,813,048 + MPMX20_04597 0.85 -0.7 4,813,098 - MPMX20_04597 0.89 -1.6 4,813,108 - MPMX20_04597 0.89 -1.4 4,813,145 + -1.5 4,813,147 + +1.9 4,813,152 + -0.1 4,813,153 - -0.3 4,813,153 - -2.0 4,813,153 - -0.8 4,813,153 - -1.4 4,813,258 + +0.8 4,813,259 + +2.1 4,813,270 + -0.1 4,813,270 + +0.1 4,813,278 - +0.3 4,813,408 + -0.1 4,813,416 - -1.1 4,813,416 - -0.7 4,813,439 + +1.0 4,813,447 - -0.8 4,813,447 - -0.1 4,813,461 + +0.2 4,813,509 + -0.2 4,813,643 + -1.3 4,813,702 + MPMX20_04598 0.11 -0.3 4,813,749 + MPMX20_04598 0.15 -1.7 4,813,839 - MPMX20_04598 0.21 +1.8 4,813,902 - MPMX20_04598 0.26 -1.4 4,813,965 - MPMX20_04598 0.31 -0.1 4,813,967 + MPMX20_04598 0.31 -1.1 4,813,972 + MPMX20_04598 0.31 -2.1 4,813,975 - MPMX20_04598 0.31 +0.9 4,813,976 + MPMX20_04598 0.31 -1.2 4,814,007 + MPMX20_04598 0.34 -1.7 4,814,007 + MPMX20_04598 0.34 +0.0 4,814,131 - MPMX20_04598 0.43 -0.3 4,814,258 + MPMX20_04598 0.52 +0.0
Or see this region's nucleotide sequence