Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03586 and MPMX20_03587 overlap by 4 nucleotides MPMX20_03587 and MPMX20_03588 are separated by 12 nucleotides MPMX20_03588 and MPMX20_03589 are separated by 15 nucleotides MPMX20_03589 and MPMX20_03590 are separated by 61 nucleotides
MPMX20_03586: MPMX20_03586 - PTS system glucitol/sorbitol-specific EIIC component, at 3,775,992 to 3,776,555
_03586
MPMX20_03587: MPMX20_03587 - PTS system glucitol/sorbitol-specific EIIB component, at 3,776,552 to 3,777,511
_03587
MPMX20_03588: MPMX20_03588 - PTS system glucitol/sorbitol-specific EIIA component, at 3,777,524 to 3,777,886
_03588
MPMX20_03589: MPMX20_03589 - Sorbitol-6-phosphate 2-dehydrogenase, at 3,777,902 to 3,778,681
_03589
MPMX20_03590: MPMX20_03590 - hypothetical protein, at 3,778,743 to 3,779,102
_03590
Position (kb)
3777
3778 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3776.558 kb on - strand at 3776.655 kb on - strand, within MPMX20_03587 at 3776.691 kb on + strand, within MPMX20_03587 at 3776.691 kb on + strand, within MPMX20_03587 at 3776.709 kb on + strand, within MPMX20_03587 at 3776.798 kb on - strand, within MPMX20_03587 at 3776.808 kb on - strand, within MPMX20_03587 at 3776.821 kb on - strand, within MPMX20_03587 at 3776.840 kb on + strand, within MPMX20_03587 at 3776.849 kb on + strand, within MPMX20_03587 at 3776.849 kb on + strand, within MPMX20_03587 at 3776.857 kb on - strand, within MPMX20_03587 at 3776.867 kb on - strand, within MPMX20_03587 at 3776.906 kb on - strand, within MPMX20_03587 at 3776.917 kb on - strand, within MPMX20_03587 at 3776.917 kb on - strand, within MPMX20_03587 at 3776.988 kb on - strand, within MPMX20_03587 at 3777.011 kb on + strand, within MPMX20_03587 at 3777.018 kb on + strand, within MPMX20_03587 at 3777.018 kb on + strand, within MPMX20_03587 at 3777.026 kb on - strand, within MPMX20_03587 at 3777.037 kb on + strand, within MPMX20_03587 at 3777.061 kb on + strand, within MPMX20_03587 at 3777.159 kb on + strand, within MPMX20_03587 at 3777.178 kb on + strand, within MPMX20_03587 at 3777.197 kb on - strand, within MPMX20_03587 at 3777.211 kb on - strand, within MPMX20_03587 at 3777.216 kb on - strand, within MPMX20_03587 at 3777.216 kb on - strand, within MPMX20_03587 at 3777.265 kb on + strand, within MPMX20_03587 at 3777.273 kb on - strand, within MPMX20_03587 at 3777.273 kb on - strand, within MPMX20_03587 at 3777.273 kb on - strand, within MPMX20_03587 at 3777.273 kb on - strand, within MPMX20_03587 at 3777.285 kb on - strand, within MPMX20_03587 at 3777.381 kb on + strand, within MPMX20_03587 at 3777.401 kb on + strand, within MPMX20_03587 at 3777.401 kb on + strand, within MPMX20_03587 at 3777.401 kb on + strand, within MPMX20_03587 at 3777.409 kb on - strand, within MPMX20_03587 at 3777.413 kb on - strand, within MPMX20_03587 at 3777.429 kb on + strand at 3777.439 kb on + strand at 3777.563 kb on - strand, within MPMX20_03588 at 3777.568 kb on - strand, within MPMX20_03588 at 3777.645 kb on - strand, within MPMX20_03588 at 3777.676 kb on + strand, within MPMX20_03588 at 3777.676 kb on + strand, within MPMX20_03588 at 3777.690 kb on - strand, within MPMX20_03588 at 3777.747 kb on + strand, within MPMX20_03588 at 3777.847 kb on + strand, within MPMX20_03588 at 3777.857 kb on - strand at 3777.868 kb on - strand at 3777.976 kb on + strand at 3777.976 kb on + strand at 3777.976 kb on + strand at 3777.976 kb on + strand at 3777.976 kb on + strand at 3777.984 kb on - strand, within MPMX20_03589 at 3777.984 kb on - strand, within MPMX20_03589 at 3777.984 kb on - strand, within MPMX20_03589 at 3777.984 kb on - strand, within MPMX20_03589 at 3777.984 kb on - strand, within MPMX20_03589 at 3778.060 kb on - strand, within MPMX20_03589 at 3778.089 kb on + strand, within MPMX20_03589 at 3778.152 kb on + strand, within MPMX20_03589 at 3778.162 kb on - strand, within MPMX20_03589 at 3778.162 kb on - strand, within MPMX20_03589 at 3778.162 kb on - strand, within MPMX20_03589 at 3778.164 kb on + strand, within MPMX20_03589 at 3778.164 kb on + strand, within MPMX20_03589 at 3778.169 kb on + strand, within MPMX20_03589 at 3778.172 kb on - strand, within MPMX20_03589 at 3778.205 kb on - strand, within MPMX20_03589 at 3778.231 kb on + strand, within MPMX20_03589 at 3778.231 kb on + strand, within MPMX20_03589 at 3778.361 kb on - strand, within MPMX20_03589 at 3778.361 kb on - strand, within MPMX20_03589 at 3778.383 kb on + strand, within MPMX20_03589 at 3778.391 kb on - strand, within MPMX20_03589 at 3778.535 kb on + strand, within MPMX20_03589 at 3778.540 kb on + strand, within MPMX20_03589 at 3778.548 kb on - strand, within MPMX20_03589 at 3778.548 kb on - strand, within MPMX20_03589 at 3778.635 kb on + strand at 3778.635 kb on + strand at 3778.655 kb on - strand at 3778.662 kb on + strand at 3778.683 kb on - strand at 3778.852 kb on - strand, within MPMX20_03590 at 3778.852 kb on - strand, within MPMX20_03590
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 3,776,558 - -0.4 3,776,655 - MPMX20_03587 0.11 -0.7 3,776,691 + MPMX20_03587 0.14 -0.3 3,776,691 + MPMX20_03587 0.14 -0.6 3,776,709 + MPMX20_03587 0.16 -0.4 3,776,798 - MPMX20_03587 0.26 -0.6 3,776,808 - MPMX20_03587 0.27 -1.0 3,776,821 - MPMX20_03587 0.28 -1.1 3,776,840 + MPMX20_03587 0.30 -1.2 3,776,849 + MPMX20_03587 0.31 -0.6 3,776,849 + MPMX20_03587 0.31 -2.1 3,776,857 - MPMX20_03587 0.32 -0.2 3,776,867 - MPMX20_03587 0.33 -1.4 3,776,906 - MPMX20_03587 0.37 -0.9 3,776,917 - MPMX20_03587 0.38 -0.6 3,776,917 - MPMX20_03587 0.38 -2.6 3,776,988 - MPMX20_03587 0.45 -1.1 3,777,011 + MPMX20_03587 0.48 -1.5 3,777,018 + MPMX20_03587 0.49 +0.6 3,777,018 + MPMX20_03587 0.49 -1.0 3,777,026 - MPMX20_03587 0.49 -2.4 3,777,037 + MPMX20_03587 0.51 +0.5 3,777,061 + MPMX20_03587 0.53 -0.2 3,777,159 + MPMX20_03587 0.63 -0.6 3,777,178 + MPMX20_03587 0.65 +0.9 3,777,197 - MPMX20_03587 0.67 -0.8 3,777,211 - MPMX20_03587 0.69 -0.2 3,777,216 - MPMX20_03587 0.69 +0.3 3,777,216 - MPMX20_03587 0.69 -2.0 3,777,265 + MPMX20_03587 0.74 -1.7 3,777,273 - MPMX20_03587 0.75 -2.6 3,777,273 - MPMX20_03587 0.75 -1.8 3,777,273 - MPMX20_03587 0.75 -0.1 3,777,273 - MPMX20_03587 0.75 -1.3 3,777,285 - MPMX20_03587 0.76 -2.2 3,777,381 + MPMX20_03587 0.86 +0.4 3,777,401 + MPMX20_03587 0.88 +0.5 3,777,401 + MPMX20_03587 0.88 -1.5 3,777,401 + MPMX20_03587 0.88 -1.2 3,777,409 - MPMX20_03587 0.89 -0.8 3,777,413 - MPMX20_03587 0.90 -1.1 3,777,429 + -0.3 3,777,439 + -0.3 3,777,563 - MPMX20_03588 0.11 -0.1 3,777,568 - MPMX20_03588 0.12 -2.8 3,777,645 - MPMX20_03588 0.33 -0.8 3,777,676 + MPMX20_03588 0.42 -1.0 3,777,676 + MPMX20_03588 0.42 -1.0 3,777,690 - MPMX20_03588 0.46 -1.8 3,777,747 + MPMX20_03588 0.61 -0.9 3,777,847 + MPMX20_03588 0.89 -0.3 3,777,857 - -1.6 3,777,868 - -2.1 3,777,976 + -5.6 3,777,976 + -4.0 3,777,976 + -2.3 3,777,976 + -5.3 3,777,976 + -4.5 3,777,984 - MPMX20_03589 0.11 -3.1 3,777,984 - MPMX20_03589 0.11 -4.4 3,777,984 - MPMX20_03589 0.11 -1.5 3,777,984 - MPMX20_03589 0.11 -2.1 3,777,984 - MPMX20_03589 0.11 -3.9 3,778,060 - MPMX20_03589 0.20 -1.8 3,778,089 + MPMX20_03589 0.24 -3.6 3,778,152 + MPMX20_03589 0.32 -4.8 3,778,162 - MPMX20_03589 0.33 -4.2 3,778,162 - MPMX20_03589 0.33 -2.6 3,778,162 - MPMX20_03589 0.33 -3.9 3,778,164 + MPMX20_03589 0.34 -4.1 3,778,164 + MPMX20_03589 0.34 -1.8 3,778,169 + MPMX20_03589 0.34 -1.6 3,778,172 - MPMX20_03589 0.35 -2.1 3,778,205 - MPMX20_03589 0.39 -1.0 3,778,231 + MPMX20_03589 0.42 -2.2 3,778,231 + MPMX20_03589 0.42 -5.0 3,778,361 - MPMX20_03589 0.59 -1.7 3,778,361 - MPMX20_03589 0.59 -1.6 3,778,383 + MPMX20_03589 0.62 -0.9 3,778,391 - MPMX20_03589 0.63 -3.4 3,778,535 + MPMX20_03589 0.81 -1.9 3,778,540 + MPMX20_03589 0.82 -3.3 3,778,548 - MPMX20_03589 0.83 -4.7 3,778,548 - MPMX20_03589 0.83 -0.7 3,778,635 + -4.8 3,778,635 + -2.4 3,778,655 - -4.2 3,778,662 + -2.4 3,778,683 - -0.3 3,778,852 - MPMX20_03590 0.30 -1.3 3,778,852 - MPMX20_03590 0.30 -1.3
Or see this region's nucleotide sequence