Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03312

Experiment: D-Sorbitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03310 and MPMX20_03311 are separated by 40 nucleotidesMPMX20_03311 and MPMX20_03312 are separated by 44 nucleotidesMPMX20_03312 and MPMX20_03313 are separated by 5 nucleotides MPMX20_03310: MPMX20_03310 - Phosphoenolpyruvate-protein phosphotransferase, at 3,478,755 to 3,480,482 _03310 MPMX20_03311: MPMX20_03311 - PTS system glucose-specific EIIA component, at 3,480,523 to 3,481,032 _03311 MPMX20_03312: MPMX20_03312 - Pyridoxine/pyridoxal/pyridoxamine kinase, at 3,481,077 to 3,481,913 _03312 MPMX20_03313: MPMX20_03313 - Cysteine synthase B, at 3,481,919 to 3,482,830 _03313 Position (kb) 3481 3482Strain fitness (log2 ratio) -3 -2 -1 0 1at 3480.126 kb on + strand, within MPMX20_03310at 3480.133 kb on + strand, within MPMX20_03310at 3480.133 kb on + strand, within MPMX20_03310at 3480.392 kb on + strandat 3480.392 kb on + strandat 3480.392 kb on + strandat 3481.088 kb on + strandat 3481.088 kb on + strandat 3481.096 kb on - strandat 3481.096 kb on - strandat 3481.113 kb on - strandat 3481.202 kb on + strand, within MPMX20_03312at 3481.202 kb on + strand, within MPMX20_03312at 3481.215 kb on - strand, within MPMX20_03312at 3481.256 kb on + strand, within MPMX20_03312at 3481.263 kb on + strand, within MPMX20_03312at 3481.265 kb on + strand, within MPMX20_03312at 3481.332 kb on + strand, within MPMX20_03312at 3481.332 kb on + strand, within MPMX20_03312at 3481.332 kb on + strand, within MPMX20_03312at 3481.376 kb on - strand, within MPMX20_03312at 3481.417 kb on - strand, within MPMX20_03312at 3481.447 kb on - strand, within MPMX20_03312at 3481.559 kb on + strand, within MPMX20_03312at 3481.559 kb on + strand, within MPMX20_03312at 3481.567 kb on - strand, within MPMX20_03312at 3481.567 kb on - strand, within MPMX20_03312at 3481.613 kb on + strand, within MPMX20_03312at 3481.653 kb on - strand, within MPMX20_03312at 3481.663 kb on + strand, within MPMX20_03312at 3481.673 kb on + strand, within MPMX20_03312at 3481.682 kb on + strand, within MPMX20_03312at 3481.758 kb on - strand, within MPMX20_03312at 3481.833 kb on + strandat 3481.833 kb on + strandat 3481.880 kb on + strandat 3481.887 kb on - strandat 3481.938 kb on + strandat 3481.938 kb on + strandat 3481.944 kb on - strandat 3481.944 kb on - strandat 3481.946 kb on - strandat 3481.954 kb on - strandat 3482.051 kb on - strand, within MPMX20_03313at 3482.823 kb on - strandat 3482.823 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
remove
3,480,126 + MPMX20_03310 0.79 -2.2
3,480,133 + MPMX20_03310 0.80 -2.8
3,480,133 + MPMX20_03310 0.80 -2.3
3,480,392 + -1.6
3,480,392 + -1.9
3,480,392 + -2.1
3,481,088 + -0.3
3,481,088 + -0.1
3,481,096 - +0.0
3,481,096 - -2.2
3,481,113 - -0.6
3,481,202 + MPMX20_03312 0.15 -1.3
3,481,202 + MPMX20_03312 0.15 +0.8
3,481,215 - MPMX20_03312 0.16 +1.3
3,481,256 + MPMX20_03312 0.21 -0.0
3,481,263 + MPMX20_03312 0.22 +1.7
3,481,265 + MPMX20_03312 0.22 -0.8
3,481,332 + MPMX20_03312 0.30 +0.4
3,481,332 + MPMX20_03312 0.30 -0.1
3,481,332 + MPMX20_03312 0.30 +0.4
3,481,376 - MPMX20_03312 0.36 +0.5
3,481,417 - MPMX20_03312 0.41 -0.6
3,481,447 - MPMX20_03312 0.44 -0.5
3,481,559 + MPMX20_03312 0.58 +0.8
3,481,559 + MPMX20_03312 0.58 -0.5
3,481,567 - MPMX20_03312 0.59 -0.0
3,481,567 - MPMX20_03312 0.59 +0.6
3,481,613 + MPMX20_03312 0.64 -0.7
3,481,653 - MPMX20_03312 0.69 +0.3
3,481,663 + MPMX20_03312 0.70 +0.4
3,481,673 + MPMX20_03312 0.71 -0.3
3,481,682 + MPMX20_03312 0.72 +0.1
3,481,758 - MPMX20_03312 0.81 -0.5
3,481,833 + -1.1
3,481,833 + +0.6
3,481,880 + +0.0
3,481,887 - -0.5
3,481,938 + +1.4
3,481,938 + -0.2
3,481,944 - -0.8
3,481,944 - +1.0
3,481,946 - +0.6
3,481,954 - -1.1
3,482,051 - MPMX20_03313 0.14 +0.1
3,482,823 - -0.3
3,482,823 - +1.1

Or see this region's nucleotide sequence