Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03456

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03454 and MPMX20_03455 are separated by 45 nucleotidesMPMX20_03455 and MPMX20_03456 overlap by 4 nucleotidesMPMX20_03456 and MPMX20_03457 are separated by 258 nucleotidesMPMX20_03457 and MPMX20_03458 are separated by 67 nucleotides MPMX20_03454: MPMX20_03454 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,642,710 to 3,644,065 _03454 MPMX20_03455: MPMX20_03455 - hypothetical protein, at 3,644,111 to 3,644,434 _03455 MPMX20_03456: MPMX20_03456 - Alpha-ketoglutarate permease, at 3,644,431 to 3,645,726 _03456 MPMX20_03457: MPMX20_03457 - 5S ribosomal RNA, at 3,645,985 to 3,646,095 _03457 MPMX20_03458: MPMX20_03458 - 23S ribosomal RNA, at 3,646,163 to 3,649,065 _03458 Position (kb) 3644 3645 3646Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3644.067 kb on + strandat 3644.075 kb on - strandat 3644.075 kb on - strandat 3644.075 kb on - strandat 3644.075 kb on - strandat 3644.075 kb on - strandat 3644.123 kb on + strandat 3644.173 kb on - strand, within MPMX20_03455at 3644.188 kb on + strand, within MPMX20_03455at 3644.188 kb on + strand, within MPMX20_03455at 3644.196 kb on - strand, within MPMX20_03455at 3644.570 kb on + strand, within MPMX20_03456at 3644.570 kb on + strand, within MPMX20_03456at 3644.580 kb on + strand, within MPMX20_03456at 3644.588 kb on - strand, within MPMX20_03456at 3644.638 kb on + strand, within MPMX20_03456at 3644.646 kb on - strand, within MPMX20_03456at 3644.714 kb on - strand, within MPMX20_03456at 3644.768 kb on - strand, within MPMX20_03456at 3644.770 kb on - strand, within MPMX20_03456at 3644.816 kb on - strand, within MPMX20_03456at 3644.850 kb on + strand, within MPMX20_03456at 3644.850 kb on + strand, within MPMX20_03456at 3644.914 kb on - strand, within MPMX20_03456at 3644.964 kb on - strand, within MPMX20_03456at 3645.047 kb on + strand, within MPMX20_03456at 3645.075 kb on - strand, within MPMX20_03456at 3645.310 kb on + strand, within MPMX20_03456at 3645.536 kb on - strand, within MPMX20_03456at 3645.549 kb on + strand, within MPMX20_03456at 3645.650 kb on + strandat 3645.716 kb on - strandat 3645.773 kb on - strandat 3645.874 kb on + strandat 3645.902 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
3,644,067 + +1.2
3,644,075 - +0.1
3,644,075 - +5.8
3,644,075 - -2.0
3,644,075 - +4.6
3,644,075 - -0.1
3,644,123 + -0.1
3,644,173 - MPMX20_03455 0.19 -0.9
3,644,188 + MPMX20_03455 0.24 -0.3
3,644,188 + MPMX20_03455 0.24 -0.8
3,644,196 - MPMX20_03455 0.26 -0.3
3,644,570 + MPMX20_03456 0.11 +1.7
3,644,570 + MPMX20_03456 0.11 +3.2
3,644,580 + MPMX20_03456 0.11 +2.5
3,644,588 - MPMX20_03456 0.12 +1.7
3,644,638 + MPMX20_03456 0.16 -1.2
3,644,646 - MPMX20_03456 0.17 +0.2
3,644,714 - MPMX20_03456 0.22 +0.8
3,644,768 - MPMX20_03456 0.26 -0.9
3,644,770 - MPMX20_03456 0.26 +3.0
3,644,816 - MPMX20_03456 0.30 -2.2
3,644,850 + MPMX20_03456 0.32 +2.0
3,644,850 + MPMX20_03456 0.32 -1.3
3,644,914 - MPMX20_03456 0.37 +0.7
3,644,964 - MPMX20_03456 0.41 +1.0
3,645,047 + MPMX20_03456 0.48 +1.3
3,645,075 - MPMX20_03456 0.50 -1.8
3,645,310 + MPMX20_03456 0.68 -1.2
3,645,536 - MPMX20_03456 0.85 -1.4
3,645,549 + MPMX20_03456 0.86 +0.7
3,645,650 + +1.0
3,645,716 - +4.0
3,645,773 - -2.6
3,645,874 + +0.5
3,645,902 + +0.6

Or see this region's nucleotide sequence