Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03363 and MPMX20_03364 are separated by 45 nucleotides MPMX20_03364 and MPMX20_03365 are separated by 113 nucleotides MPMX20_03365 and MPMX20_03366 are separated by 41 nucleotides MPMX20_03366 and MPMX20_03367 are separated by 9 nucleotides
MPMX20_03363: MPMX20_03363 - hypothetical protein, at 3,539,501 to 3,540,244
_03363
MPMX20_03364: MPMX20_03364 - hypothetical protein, at 3,540,290 to 3,540,736
_03364
MPMX20_03365: MPMX20_03365 - Purine ribonucleoside efflux pump NepI, at 3,540,850 to 3,542,067
_03365
MPMX20_03366: MPMX20_03366 - 5-deoxy-glucuronate isomerase, at 3,542,109 to 3,542,921
_03366
MPMX20_03367: MPMX20_03367 - Inosose dehydratase, at 3,542,931 to 3,543,821
_03367
Position (kb)
3540
3541
3542
3543 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3539.872 kb on + strand, within MPMX20_03363 at 3539.874 kb on - strand, within MPMX20_03363 at 3539.882 kb on + strand, within MPMX20_03363 at 3539.979 kb on + strand, within MPMX20_03363 at 3540.014 kb on - strand, within MPMX20_03363 at 3540.024 kb on - strand, within MPMX20_03363 at 3540.078 kb on + strand, within MPMX20_03363 at 3540.111 kb on + strand, within MPMX20_03363 at 3540.180 kb on + strand at 3540.226 kb on + strand at 3540.248 kb on + strand at 3540.280 kb on - strand at 3540.290 kb on - strand at 3540.307 kb on + strand at 3540.315 kb on - strand at 3540.333 kb on + strand at 3540.443 kb on - strand, within MPMX20_03364 at 3540.581 kb on - strand, within MPMX20_03364 at 3540.679 kb on + strand, within MPMX20_03364 at 3540.738 kb on + strand at 3540.741 kb on - strand at 3540.746 kb on - strand at 3540.746 kb on - strand at 3540.746 kb on - strand at 3540.841 kb on + strand at 3540.859 kb on - strand at 3540.859 kb on - strand at 3540.859 kb on - strand at 3540.868 kb on - strand at 3540.958 kb on - strand at 3540.958 kb on - strand at 3540.958 kb on - strand at 3540.974 kb on - strand, within MPMX20_03365 at 3541.056 kb on + strand, within MPMX20_03365 at 3541.066 kb on + strand, within MPMX20_03365 at 3541.138 kb on + strand, within MPMX20_03365 at 3541.147 kb on - strand, within MPMX20_03365 at 3541.166 kb on - strand, within MPMX20_03365 at 3541.239 kb on - strand, within MPMX20_03365 at 3541.282 kb on + strand, within MPMX20_03365 at 3541.282 kb on + strand, within MPMX20_03365 at 3541.301 kb on + strand, within MPMX20_03365 at 3541.306 kb on + strand, within MPMX20_03365 at 3541.306 kb on + strand, within MPMX20_03365 at 3541.395 kb on - strand, within MPMX20_03365 at 3541.441 kb on + strand, within MPMX20_03365 at 3541.444 kb on - strand, within MPMX20_03365 at 3541.444 kb on - strand, within MPMX20_03365 at 3541.444 kb on - strand, within MPMX20_03365 at 3541.496 kb on + strand, within MPMX20_03365 at 3541.501 kb on + strand, within MPMX20_03365 at 3541.509 kb on - strand, within MPMX20_03365 at 3541.555 kb on + strand, within MPMX20_03365 at 3541.597 kb on - strand, within MPMX20_03365 at 3541.600 kb on - strand, within MPMX20_03365 at 3541.600 kb on - strand, within MPMX20_03365 at 3541.618 kb on + strand, within MPMX20_03365 at 3541.626 kb on - strand, within MPMX20_03365 at 3541.626 kb on - strand, within MPMX20_03365 at 3541.626 kb on - strand, within MPMX20_03365 at 3541.626 kb on - strand, within MPMX20_03365 at 3541.657 kb on - strand, within MPMX20_03365 at 3541.736 kb on + strand, within MPMX20_03365 at 3541.749 kb on - strand, within MPMX20_03365 at 3541.754 kb on - strand, within MPMX20_03365 at 3541.846 kb on + strand, within MPMX20_03365 at 3541.872 kb on - strand, within MPMX20_03365 at 3541.905 kb on + strand, within MPMX20_03365 at 3541.918 kb on - strand, within MPMX20_03365 at 3541.923 kb on + strand, within MPMX20_03365 at 3541.956 kb on + strand at 3542.009 kb on + strand at 3542.029 kb on - strand at 3542.062 kb on + strand at 3542.062 kb on + strand at 3542.062 kb on + strand at 3542.062 kb on + strand at 3542.062 kb on + strand at 3542.070 kb on - strand at 3542.070 kb on - strand at 3542.070 kb on - strand at 3542.070 kb on - strand at 3542.070 kb on - strand at 3542.115 kb on - strand at 3542.155 kb on - strand at 3542.176 kb on + strand at 3542.213 kb on - strand, within MPMX20_03366 at 3542.238 kb on - strand, within MPMX20_03366 at 3542.247 kb on - strand, within MPMX20_03366 at 3542.265 kb on + strand, within MPMX20_03366 at 3542.281 kb on + strand, within MPMX20_03366 at 3542.283 kb on - strand, within MPMX20_03366 at 3542.283 kb on - strand, within MPMX20_03366 at 3542.283 kb on - strand, within MPMX20_03366 at 3542.283 kb on - strand, within MPMX20_03366 at 3542.283 kb on - strand, within MPMX20_03366 at 3542.305 kb on + strand, within MPMX20_03366 at 3542.305 kb on + strand, within MPMX20_03366 at 3542.313 kb on - strand, within MPMX20_03366 at 3542.313 kb on - strand, within MPMX20_03366 at 3542.338 kb on + strand, within MPMX20_03366 at 3542.338 kb on + strand, within MPMX20_03366 at 3542.363 kb on + strand, within MPMX20_03366 at 3542.414 kb on + strand, within MPMX20_03366 at 3542.422 kb on - strand, within MPMX20_03366 at 3542.422 kb on - strand, within MPMX20_03366 at 3542.422 kb on - strand, within MPMX20_03366 at 3542.430 kb on + strand, within MPMX20_03366 at 3542.430 kb on + strand, within MPMX20_03366 at 3542.448 kb on - strand, within MPMX20_03366 at 3542.448 kb on - strand, within MPMX20_03366 at 3542.448 kb on - strand, within MPMX20_03366 at 3542.510 kb on + strand, within MPMX20_03366 at 3542.519 kb on - strand, within MPMX20_03366 at 3542.539 kb on + strand, within MPMX20_03366 at 3542.544 kb on + strand, within MPMX20_03366 at 3542.554 kb on + strand, within MPMX20_03366 at 3542.628 kb on + strand, within MPMX20_03366 at 3542.670 kb on - strand, within MPMX20_03366 at 3542.756 kb on + strand, within MPMX20_03366 at 3542.756 kb on + strand, within MPMX20_03366 at 3542.756 kb on + strand, within MPMX20_03366 at 3542.757 kb on + strand, within MPMX20_03366 at 3542.870 kb on + strand at 3542.870 kb on + strand at 3542.878 kb on - strand at 3542.878 kb on - strand at 3542.878 kb on - strand at 3542.929 kb on + strand at 3542.969 kb on - strand at 3542.970 kb on + strand at 3542.974 kb on - strand at 3542.976 kb on + strand at 3542.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 3,539,872 + MPMX20_03363 0.50 -1.0 3,539,874 - MPMX20_03363 0.50 +0.4 3,539,882 + MPMX20_03363 0.51 -0.5 3,539,979 + MPMX20_03363 0.64 -0.4 3,540,014 - MPMX20_03363 0.69 +0.3 3,540,024 - MPMX20_03363 0.70 -1.1 3,540,078 + MPMX20_03363 0.78 +0.9 3,540,111 + MPMX20_03363 0.82 -0.1 3,540,180 + +1.3 3,540,226 + -0.2 3,540,248 + +1.1 3,540,280 - -1.0 3,540,290 - +0.8 3,540,307 + +0.1 3,540,315 - +2.4 3,540,333 + +2.9 3,540,443 - MPMX20_03364 0.34 +1.6 3,540,581 - MPMX20_03364 0.65 +2.2 3,540,679 + MPMX20_03364 0.87 +2.5 3,540,738 + +1.1 3,540,741 - +1.7 3,540,746 - -1.4 3,540,746 - -1.3 3,540,746 - -0.2 3,540,841 + -0.3 3,540,859 - +2.4 3,540,859 - +3.7 3,540,859 - -1.2 3,540,868 - -0.6 3,540,958 - +0.9 3,540,958 - -0.8 3,540,958 - -1.1 3,540,974 - MPMX20_03365 0.10 +1.2 3,541,056 + MPMX20_03365 0.17 -0.5 3,541,066 + MPMX20_03365 0.18 -0.5 3,541,138 + MPMX20_03365 0.24 +3.3 3,541,147 - MPMX20_03365 0.24 +0.5 3,541,166 - MPMX20_03365 0.26 -0.2 3,541,239 - MPMX20_03365 0.32 +0.6 3,541,282 + MPMX20_03365 0.35 -1.6 3,541,282 + MPMX20_03365 0.35 -2.3 3,541,301 + MPMX20_03365 0.37 -0.0 3,541,306 + MPMX20_03365 0.37 -1.0 3,541,306 + MPMX20_03365 0.37 +1.2 3,541,395 - MPMX20_03365 0.45 -0.9 3,541,441 + MPMX20_03365 0.49 -1.3 3,541,444 - MPMX20_03365 0.49 -0.8 3,541,444 - MPMX20_03365 0.49 -3.5 3,541,444 - MPMX20_03365 0.49 +2.5 3,541,496 + MPMX20_03365 0.53 -0.4 3,541,501 + MPMX20_03365 0.53 +0.3 3,541,509 - MPMX20_03365 0.54 +0.0 3,541,555 + MPMX20_03365 0.58 -2.0 3,541,597 - MPMX20_03365 0.61 +1.1 3,541,600 - MPMX20_03365 0.62 -1.5 3,541,600 - MPMX20_03365 0.62 +0.1 3,541,618 + MPMX20_03365 0.63 +1.3 3,541,626 - MPMX20_03365 0.64 +0.1 3,541,626 - MPMX20_03365 0.64 -1.2 3,541,626 - MPMX20_03365 0.64 +0.3 3,541,626 - MPMX20_03365 0.64 +0.1 3,541,657 - MPMX20_03365 0.66 +0.3 3,541,736 + MPMX20_03365 0.73 +0.7 3,541,749 - MPMX20_03365 0.74 +1.2 3,541,754 - MPMX20_03365 0.74 +3.2 3,541,846 + MPMX20_03365 0.82 +2.3 3,541,872 - MPMX20_03365 0.84 +3.4 3,541,905 + MPMX20_03365 0.87 +0.3 3,541,918 - MPMX20_03365 0.88 -1.3 3,541,923 + MPMX20_03365 0.88 -0.4 3,541,956 + +1.5 3,542,009 + +1.6 3,542,029 - -1.8 3,542,062 + +0.7 3,542,062 + -1.1 3,542,062 + +2.7 3,542,062 + -0.2 3,542,062 + +0.0 3,542,070 - +0.7 3,542,070 - +0.2 3,542,070 - +1.7 3,542,070 - -1.7 3,542,070 - -0.1 3,542,115 - +0.9 3,542,155 - -0.4 3,542,176 + -0.8 3,542,213 - MPMX20_03366 0.13 -0.4 3,542,238 - MPMX20_03366 0.16 +0.1 3,542,247 - MPMX20_03366 0.17 +2.0 3,542,265 + MPMX20_03366 0.19 -1.1 3,542,281 + MPMX20_03366 0.21 -0.3 3,542,283 - MPMX20_03366 0.21 +0.2 3,542,283 - MPMX20_03366 0.21 +0.7 3,542,283 - MPMX20_03366 0.21 +0.9 3,542,283 - MPMX20_03366 0.21 +0.1 3,542,283 - MPMX20_03366 0.21 +0.7 3,542,305 + MPMX20_03366 0.24 -1.4 3,542,305 + MPMX20_03366 0.24 -0.7 3,542,313 - MPMX20_03366 0.25 -0.8 3,542,313 - MPMX20_03366 0.25 -0.6 3,542,338 + MPMX20_03366 0.28 +1.1 3,542,338 + MPMX20_03366 0.28 -0.8 3,542,363 + MPMX20_03366 0.31 -0.2 3,542,414 + MPMX20_03366 0.38 +0.6 3,542,422 - MPMX20_03366 0.38 -0.5 3,542,422 - MPMX20_03366 0.38 +0.1 3,542,422 - MPMX20_03366 0.38 +1.4 3,542,430 + MPMX20_03366 0.39 +4.8 3,542,430 + MPMX20_03366 0.39 +0.5 3,542,448 - MPMX20_03366 0.42 -1.2 3,542,448 - MPMX20_03366 0.42 +0.6 3,542,448 - MPMX20_03366 0.42 +0.1 3,542,510 + MPMX20_03366 0.49 -1.1 3,542,519 - MPMX20_03366 0.50 -0.2 3,542,539 + MPMX20_03366 0.53 +0.7 3,542,544 + MPMX20_03366 0.54 +1.7 3,542,554 + MPMX20_03366 0.55 -0.2 3,542,628 + MPMX20_03366 0.64 +0.9 3,542,670 - MPMX20_03366 0.69 -0.8 3,542,756 + MPMX20_03366 0.80 -0.2 3,542,756 + MPMX20_03366 0.80 +2.9 3,542,756 + MPMX20_03366 0.80 +0.0 3,542,757 + MPMX20_03366 0.80 -0.3 3,542,870 + +0.1 3,542,870 + -1.2 3,542,878 - -2.9 3,542,878 - -0.8 3,542,878 - +1.7 3,542,929 + -1.3 3,542,969 - -1.3 3,542,970 + -0.9 3,542,974 - +3.5 3,542,976 + +0.6 3,542,994 - +2.4
Or see this region's nucleotide sequence