Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01992 and MPMX20_01993 overlap by 1 nucleotides MPMX20_01993 and MPMX20_01994 are separated by 2 nucleotides MPMX20_01994 and MPMX20_01995 are separated by 192 nucleotides MPMX20_01995 and MPMX20_01996 are separated by 35 nucleotides
MPMX20_01992: MPMX20_01992 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 2,081,486 to 2,083,519
_01992
MPMX20_01993: MPMX20_01993 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 2,083,519 to 2,084,379
_01993
MPMX20_01994: MPMX20_01994 - hypothetical protein, at 2,084,382 to 2,084,618
_01994
MPMX20_01995: MPMX20_01995 - Transcriptional regulator SlyA, at 2,084,811 to 2,085,245
_01995
MPMX20_01996: MPMX20_01996 - putative diguanylate cyclase DgcT, at 2,085,281 to 2,086,642
_01996
Position (kb)
2084
2085 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2083.387 kb on + strand at 2083.387 kb on + strand at 2083.387 kb on + strand at 2083.417 kb on + strand at 2083.425 kb on - strand at 2083.437 kb on + strand at 2083.445 kb on - strand at 2083.468 kb on - strand at 2083.513 kb on - strand at 2083.565 kb on + strand at 2083.566 kb on - strand at 2083.571 kb on - strand at 2083.571 kb on - strand at 2083.573 kb on - strand at 2083.626 kb on + strand, within MPMX20_01993 at 2083.628 kb on - strand, within MPMX20_01993 at 2083.669 kb on + strand, within MPMX20_01993 at 2083.736 kb on + strand, within MPMX20_01993 at 2083.744 kb on - strand, within MPMX20_01993 at 2083.766 kb on - strand, within MPMX20_01993 at 2083.766 kb on - strand, within MPMX20_01993 at 2083.785 kb on + strand, within MPMX20_01993 at 2083.825 kb on + strand, within MPMX20_01993 at 2083.825 kb on + strand, within MPMX20_01993 at 2083.836 kb on - strand, within MPMX20_01993 at 2083.958 kb on - strand, within MPMX20_01993 at 2083.963 kb on - strand, within MPMX20_01993 at 2083.991 kb on + strand, within MPMX20_01993 at 2084.022 kb on - strand, within MPMX20_01993 at 2084.093 kb on + strand, within MPMX20_01993 at 2084.101 kb on - strand, within MPMX20_01993 at 2084.211 kb on + strand, within MPMX20_01993 at 2084.230 kb on + strand, within MPMX20_01993 at 2084.235 kb on + strand, within MPMX20_01993 at 2084.235 kb on + strand, within MPMX20_01993 at 2084.240 kb on + strand, within MPMX20_01993 at 2084.243 kb on - strand, within MPMX20_01993 at 2084.243 kb on - strand, within MPMX20_01993 at 2084.243 kb on - strand, within MPMX20_01993 at 2084.243 kb on - strand, within MPMX20_01993 at 2084.243 kb on - strand, within MPMX20_01993 at 2084.248 kb on - strand, within MPMX20_01993 at 2084.248 kb on - strand, within MPMX20_01993 at 2084.248 kb on - strand, within MPMX20_01993 at 2084.248 kb on - strand, within MPMX20_01993 at 2084.248 kb on - strand, within MPMX20_01993 at 2084.248 kb on - strand, within MPMX20_01993 at 2084.248 kb on - strand, within MPMX20_01993 at 2084.253 kb on - strand, within MPMX20_01993 at 2084.255 kb on + strand, within MPMX20_01993 at 2084.275 kb on + strand, within MPMX20_01993 at 2084.283 kb on - strand, within MPMX20_01993 at 2084.283 kb on - strand, within MPMX20_01993 at 2084.283 kb on - strand, within MPMX20_01993 at 2084.289 kb on - strand, within MPMX20_01993 at 2084.331 kb on + strand at 2084.331 kb on + strand at 2084.495 kb on - strand, within MPMX20_01994 at 2084.500 kb on + strand, within MPMX20_01994 at 2084.533 kb on + strand, within MPMX20_01994 at 2084.533 kb on + strand, within MPMX20_01994 at 2084.541 kb on - strand, within MPMX20_01994 at 2084.541 kb on - strand, within MPMX20_01994 at 2084.541 kb on - strand, within MPMX20_01994 at 2084.541 kb on - strand, within MPMX20_01994 at 2084.541 kb on - strand, within MPMX20_01994 at 2084.541 kb on - strand, within MPMX20_01994 at 2084.541 kb on - strand, within MPMX20_01994 at 2084.541 kb on - strand, within MPMX20_01994 at 2084.591 kb on + strand, within MPMX20_01994 at 2084.591 kb on + strand, within MPMX20_01994 at 2084.599 kb on - strand at 2084.622 kb on + strand at 2084.629 kb on + strand at 2084.637 kb on - strand at 2084.661 kb on + strand at 2084.661 kb on + strand at 2084.661 kb on + strand at 2084.661 kb on + strand at 2084.661 kb on + strand at 2084.662 kb on - strand at 2084.669 kb on - strand at 2084.688 kb on - strand at 2084.690 kb on + strand at 2084.702 kb on + strand at 2084.759 kb on - strand at 2084.828 kb on - strand at 2084.842 kb on + strand at 2084.878 kb on + strand, within MPMX20_01995 at 2084.919 kb on - strand, within MPMX20_01995 at 2084.921 kb on + strand, within MPMX20_01995 at 2084.921 kb on + strand, within MPMX20_01995 at 2084.921 kb on + strand, within MPMX20_01995 at 2084.921 kb on + strand, within MPMX20_01995 at 2084.929 kb on - strand, within MPMX20_01995 at 2084.941 kb on + strand, within MPMX20_01995 at 2084.944 kb on - strand, within MPMX20_01995 at 2084.944 kb on - strand, within MPMX20_01995 at 2084.980 kb on + strand, within MPMX20_01995 at 2084.980 kb on + strand, within MPMX20_01995 at 2085.038 kb on - strand, within MPMX20_01995 at 2085.085 kb on - strand, within MPMX20_01995 at 2085.183 kb on + strand, within MPMX20_01995 at 2085.183 kb on + strand, within MPMX20_01995 at 2085.183 kb on - strand, within MPMX20_01995 at 2085.213 kb on - strand at 2085.220 kb on + strand at 2085.259 kb on - strand at 2085.364 kb on - strand at 2085.402 kb on - strand at 2085.402 kb on - strand at 2085.402 kb on - strand at 2085.402 kb on - strand at 2085.402 kb on - strand at 2085.435 kb on + strand, within MPMX20_01996 at 2085.435 kb on + strand, within MPMX20_01996 at 2085.435 kb on + strand, within MPMX20_01996 at 2085.435 kb on + strand, within MPMX20_01996 at 2085.435 kb on + strand, within MPMX20_01996 at 2085.443 kb on - strand, within MPMX20_01996 at 2085.443 kb on - strand, within MPMX20_01996 at 2085.443 kb on - strand, within MPMX20_01996 at 2085.445 kb on + strand, within MPMX20_01996 at 2085.460 kb on + strand, within MPMX20_01996 at 2085.460 kb on + strand, within MPMX20_01996 at 2085.460 kb on + strand, within MPMX20_01996 at 2085.468 kb on - strand, within MPMX20_01996 at 2085.495 kb on + strand, within MPMX20_01996 at 2085.507 kb on + strand, within MPMX20_01996 at 2085.507 kb on + strand, within MPMX20_01996 at 2085.515 kb on - strand, within MPMX20_01996 at 2085.599 kb on + strand, within MPMX20_01996
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 2,083,387 + +0.4 2,083,387 + -0.4 2,083,387 + +1.9 2,083,417 + -2.5 2,083,425 - -0.3 2,083,437 + +1.3 2,083,445 - -0.3 2,083,468 - +2.6 2,083,513 - +1.2 2,083,565 + +1.8 2,083,566 - +1.0 2,083,571 - +1.3 2,083,571 - +2.6 2,083,573 - -0.2 2,083,626 + MPMX20_01993 0.12 -0.2 2,083,628 - MPMX20_01993 0.13 -1.6 2,083,669 + MPMX20_01993 0.17 -0.1 2,083,736 + MPMX20_01993 0.25 -1.7 2,083,744 - MPMX20_01993 0.26 +0.2 2,083,766 - MPMX20_01993 0.29 -0.5 2,083,766 - MPMX20_01993 0.29 -0.1 2,083,785 + MPMX20_01993 0.31 -0.5 2,083,825 + MPMX20_01993 0.36 +2.8 2,083,825 + MPMX20_01993 0.36 +1.3 2,083,836 - MPMX20_01993 0.37 -1.9 2,083,958 - MPMX20_01993 0.51 +2.5 2,083,963 - MPMX20_01993 0.52 -1.0 2,083,991 + MPMX20_01993 0.55 +0.2 2,084,022 - MPMX20_01993 0.58 -1.1 2,084,093 + MPMX20_01993 0.67 -0.5 2,084,101 - MPMX20_01993 0.68 -1.1 2,084,211 + MPMX20_01993 0.80 +1.4 2,084,230 + MPMX20_01993 0.83 +0.8 2,084,235 + MPMX20_01993 0.83 -0.3 2,084,235 + MPMX20_01993 0.83 -0.2 2,084,240 + MPMX20_01993 0.84 +0.5 2,084,243 - MPMX20_01993 0.84 -0.3 2,084,243 - MPMX20_01993 0.84 -0.4 2,084,243 - MPMX20_01993 0.84 +1.1 2,084,243 - MPMX20_01993 0.84 -0.2 2,084,243 - MPMX20_01993 0.84 -0.8 2,084,248 - MPMX20_01993 0.85 -0.8 2,084,248 - MPMX20_01993 0.85 -0.5 2,084,248 - MPMX20_01993 0.85 -2.2 2,084,248 - MPMX20_01993 0.85 +0.1 2,084,248 - MPMX20_01993 0.85 -1.8 2,084,248 - MPMX20_01993 0.85 +1.0 2,084,248 - MPMX20_01993 0.85 +0.2 2,084,253 - MPMX20_01993 0.85 +3.5 2,084,255 + MPMX20_01993 0.85 -0.4 2,084,275 + MPMX20_01993 0.88 +4.6 2,084,283 - MPMX20_01993 0.89 +0.8 2,084,283 - MPMX20_01993 0.89 +0.0 2,084,283 - MPMX20_01993 0.89 +2.4 2,084,289 - MPMX20_01993 0.89 -2.8 2,084,331 + +0.4 2,084,331 + +1.2 2,084,495 - MPMX20_01994 0.48 +0.6 2,084,500 + MPMX20_01994 0.50 -0.3 2,084,533 + MPMX20_01994 0.64 +1.4 2,084,533 + MPMX20_01994 0.64 +4.3 2,084,541 - MPMX20_01994 0.67 +1.5 2,084,541 - MPMX20_01994 0.67 -0.1 2,084,541 - MPMX20_01994 0.67 -1.2 2,084,541 - MPMX20_01994 0.67 +2.2 2,084,541 - MPMX20_01994 0.67 +0.9 2,084,541 - MPMX20_01994 0.67 -1.5 2,084,541 - MPMX20_01994 0.67 +0.8 2,084,541 - MPMX20_01994 0.67 -1.8 2,084,591 + MPMX20_01994 0.88 +0.5 2,084,591 + MPMX20_01994 0.88 -1.8 2,084,599 - -1.0 2,084,622 + +0.8 2,084,629 + +1.1 2,084,637 - +1.6 2,084,661 + -1.3 2,084,661 + -0.6 2,084,661 + -1.8 2,084,661 + -1.7 2,084,661 + -2.7 2,084,662 - -0.4 2,084,669 - +0.1 2,084,688 - -0.7 2,084,690 + -0.8 2,084,702 + -0.1 2,084,759 - +0.3 2,084,828 - -1.6 2,084,842 + +0.6 2,084,878 + MPMX20_01995 0.15 -2.1 2,084,919 - MPMX20_01995 0.25 -3.2 2,084,921 + MPMX20_01995 0.25 -1.2 2,084,921 + MPMX20_01995 0.25 -0.2 2,084,921 + MPMX20_01995 0.25 -2.0 2,084,921 + MPMX20_01995 0.25 +1.1 2,084,929 - MPMX20_01995 0.27 -0.4 2,084,941 + MPMX20_01995 0.30 -0.9 2,084,944 - MPMX20_01995 0.31 -3.7 2,084,944 - MPMX20_01995 0.31 -1.7 2,084,980 + MPMX20_01995 0.39 -0.1 2,084,980 + MPMX20_01995 0.39 -1.2 2,085,038 - MPMX20_01995 0.52 -2.6 2,085,085 - MPMX20_01995 0.63 -1.5 2,085,183 + MPMX20_01995 0.86 -0.4 2,085,183 + MPMX20_01995 0.86 -1.6 2,085,183 - MPMX20_01995 0.86 -1.2 2,085,213 - -0.8 2,085,220 + +0.7 2,085,259 - +1.8 2,085,364 - +0.8 2,085,402 - -0.4 2,085,402 - -0.9 2,085,402 - +0.1 2,085,402 - -1.0 2,085,402 - +0.8 2,085,435 + MPMX20_01996 0.11 +2.2 2,085,435 + MPMX20_01996 0.11 -0.8 2,085,435 + MPMX20_01996 0.11 -0.0 2,085,435 + MPMX20_01996 0.11 +2.2 2,085,435 + MPMX20_01996 0.11 -2.2 2,085,443 - MPMX20_01996 0.12 -0.4 2,085,443 - MPMX20_01996 0.12 -0.3 2,085,443 - MPMX20_01996 0.12 +0.7 2,085,445 + MPMX20_01996 0.12 -0.2 2,085,460 + MPMX20_01996 0.13 +0.4 2,085,460 + MPMX20_01996 0.13 -0.1 2,085,460 + MPMX20_01996 0.13 +0.2 2,085,468 - MPMX20_01996 0.14 -0.2 2,085,495 + MPMX20_01996 0.16 +1.9 2,085,507 + MPMX20_01996 0.17 -3.0 2,085,507 + MPMX20_01996 0.17 +1.9 2,085,515 - MPMX20_01996 0.17 -1.4 2,085,599 + MPMX20_01996 0.23 +0.9
Or see this region's nucleotide sequence