Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04169 and MPMX20_04170 are separated by 23 nucleotides MPMX20_04170 and MPMX20_04171 are separated by 180 nucleotides MPMX20_04171 and MPMX20_04172 are separated by 139 nucleotides
MPMX20_04169: MPMX20_04169 - tRNA-dihydrouridine synthase B, at 4,371,849 to 4,372,814
_04169
MPMX20_04170: MPMX20_04170 - DNA-binding protein Fis, at 4,372,838 to 4,373,134
_04170
MPMX20_04171: MPMX20_04171 - hypothetical protein, at 4,373,315 to 4,373,479
_04171
MPMX20_04172: MPMX20_04172 - putative signaling protein, at 4,373,619 to 4,375,712
_04172
Position (kb)
4372
4373
4374 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4371.881 kb on + strand at 4371.941 kb on + strand at 4371.951 kb on + strand, within MPMX20_04169 at 4371.960 kb on - strand, within MPMX20_04169 at 4371.971 kb on + strand, within MPMX20_04169 at 4372.179 kb on + strand, within MPMX20_04169 at 4372.199 kb on - strand, within MPMX20_04169 at 4372.208 kb on + strand, within MPMX20_04169 at 4372.213 kb on + strand, within MPMX20_04169 at 4372.213 kb on + strand, within MPMX20_04169 at 4372.221 kb on - strand, within MPMX20_04169 at 4372.221 kb on - strand, within MPMX20_04169 at 4372.221 kb on - strand, within MPMX20_04169 at 4372.230 kb on + strand, within MPMX20_04169 at 4372.231 kb on - strand, within MPMX20_04169 at 4372.232 kb on + strand, within MPMX20_04169 at 4372.240 kb on - strand, within MPMX20_04169 at 4372.248 kb on - strand, within MPMX20_04169 at 4372.292 kb on + strand, within MPMX20_04169 at 4372.298 kb on - strand, within MPMX20_04169 at 4372.308 kb on - strand, within MPMX20_04169 at 4372.308 kb on - strand, within MPMX20_04169 at 4372.308 kb on - strand, within MPMX20_04169 at 4372.349 kb on - strand, within MPMX20_04169 at 4372.456 kb on + strand, within MPMX20_04169 at 4372.456 kb on + strand, within MPMX20_04169 at 4372.467 kb on + strand, within MPMX20_04169 at 4372.472 kb on + strand, within MPMX20_04169 at 4372.472 kb on + strand, within MPMX20_04169 at 4372.539 kb on + strand, within MPMX20_04169 at 4372.547 kb on - strand, within MPMX20_04169 at 4372.664 kb on + strand, within MPMX20_04169 at 4372.673 kb on + strand, within MPMX20_04169 at 4372.768 kb on + strand at 4372.783 kb on - strand at 4372.926 kb on + strand, within MPMX20_04170 at 4372.968 kb on + strand, within MPMX20_04170 at 4372.992 kb on + strand, within MPMX20_04170 at 4373.054 kb on + strand, within MPMX20_04170 at 4373.069 kb on + strand, within MPMX20_04170 at 4373.069 kb on + strand, within MPMX20_04170 at 4373.069 kb on + strand, within MPMX20_04170 at 4373.091 kb on + strand, within MPMX20_04170 at 4373.091 kb on + strand, within MPMX20_04170 at 4373.214 kb on + strand at 4373.214 kb on + strand at 4373.214 kb on + strand at 4373.214 kb on + strand at 4373.214 kb on + strand at 4373.214 kb on + strand at 4373.214 kb on + strand at 4373.214 kb on + strand at 4373.214 kb on + strand at 4373.222 kb on - strand at 4373.222 kb on - strand at 4373.222 kb on - strand at 4373.222 kb on - strand at 4373.222 kb on - strand at 4373.224 kb on + strand at 4373.224 kb on + strand at 4373.224 kb on + strand at 4373.224 kb on + strand at 4373.224 kb on + strand at 4373.224 kb on + strand at 4373.232 kb on - strand at 4373.232 kb on - strand at 4373.232 kb on - strand at 4373.232 kb on - strand at 4373.254 kb on - strand at 4373.351 kb on + strand, within MPMX20_04171 at 4373.388 kb on + strand, within MPMX20_04171 at 4373.396 kb on - strand, within MPMX20_04171 at 4373.396 kb on - strand, within MPMX20_04171 at 4373.401 kb on - strand, within MPMX20_04171 at 4373.463 kb on + strand at 4373.463 kb on + strand at 4373.468 kb on + strand at 4373.468 kb on + strand at 4373.471 kb on - strand at 4373.471 kb on - strand at 4373.471 kb on - strand at 4373.481 kb on + strand at 4373.504 kb on + strand at 4373.504 kb on + strand at 4373.544 kb on - strand at 4373.551 kb on - strand at 4373.565 kb on + strand at 4373.572 kb on - strand at 4373.573 kb on + strand at 4373.584 kb on + strand at 4373.595 kb on + strand at 4373.595 kb on + strand at 4373.603 kb on - strand at 4373.603 kb on - strand at 4373.603 kb on - strand at 4373.603 kb on - strand at 4373.603 kb on - strand at 4373.659 kb on + strand at 4373.696 kb on + strand at 4373.696 kb on + strand at 4373.704 kb on - strand at 4373.704 kb on - strand at 4373.726 kb on + strand at 4373.829 kb on + strand, within MPMX20_04172 at 4373.836 kb on - strand, within MPMX20_04172 at 4373.849 kb on - strand, within MPMX20_04172 at 4373.850 kb on - strand, within MPMX20_04172 at 4373.889 kb on + strand, within MPMX20_04172 at 4373.889 kb on + strand, within MPMX20_04172 at 4373.911 kb on + strand, within MPMX20_04172 at 4373.914 kb on - strand, within MPMX20_04172 at 4373.919 kb on - strand, within MPMX20_04172 at 4373.933 kb on - strand, within MPMX20_04172 at 4374.019 kb on + strand, within MPMX20_04172 at 4374.042 kb on - strand, within MPMX20_04172 at 4374.126 kb on - strand, within MPMX20_04172
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 4,371,881 + +1.8 4,371,941 + -2.4 4,371,951 + MPMX20_04169 0.11 +1.3 4,371,960 - MPMX20_04169 0.11 +2.2 4,371,971 + MPMX20_04169 0.13 -0.7 4,372,179 + MPMX20_04169 0.34 -2.2 4,372,199 - MPMX20_04169 0.36 -1.5 4,372,208 + MPMX20_04169 0.37 +1.6 4,372,213 + MPMX20_04169 0.38 +0.1 4,372,213 + MPMX20_04169 0.38 -1.5 4,372,221 - MPMX20_04169 0.39 +0.6 4,372,221 - MPMX20_04169 0.39 +0.6 4,372,221 - MPMX20_04169 0.39 +2.9 4,372,230 + MPMX20_04169 0.39 +3.9 4,372,231 - MPMX20_04169 0.40 -2.0 4,372,232 + MPMX20_04169 0.40 +0.2 4,372,240 - MPMX20_04169 0.40 +1.1 4,372,248 - MPMX20_04169 0.41 -0.4 4,372,292 + MPMX20_04169 0.46 -0.1 4,372,298 - MPMX20_04169 0.46 +2.5 4,372,308 - MPMX20_04169 0.48 +1.1 4,372,308 - MPMX20_04169 0.48 +1.7 4,372,308 - MPMX20_04169 0.48 +1.6 4,372,349 - MPMX20_04169 0.52 -0.8 4,372,456 + MPMX20_04169 0.63 +1.0 4,372,456 + MPMX20_04169 0.63 +1.3 4,372,467 + MPMX20_04169 0.64 +1.4 4,372,472 + MPMX20_04169 0.64 -0.8 4,372,472 + MPMX20_04169 0.64 +2.3 4,372,539 + MPMX20_04169 0.71 +1.5 4,372,547 - MPMX20_04169 0.72 +0.3 4,372,664 + MPMX20_04169 0.84 +1.5 4,372,673 + MPMX20_04169 0.85 +0.1 4,372,768 + +3.8 4,372,783 - -0.2 4,372,926 + MPMX20_04170 0.30 -1.8 4,372,968 + MPMX20_04170 0.44 -0.4 4,372,992 + MPMX20_04170 0.52 +1.6 4,373,054 + MPMX20_04170 0.73 +3.5 4,373,069 + MPMX20_04170 0.78 -0.8 4,373,069 + MPMX20_04170 0.78 +4.6 4,373,069 + MPMX20_04170 0.78 +1.1 4,373,091 + MPMX20_04170 0.85 +1.1 4,373,091 + MPMX20_04170 0.85 +2.6 4,373,214 + -0.4 4,373,214 + +1.5 4,373,214 + -1.9 4,373,214 + +1.1 4,373,214 + -0.9 4,373,214 + -3.4 4,373,214 + +0.5 4,373,214 + -0.5 4,373,214 + +0.6 4,373,222 - -2.7 4,373,222 - +0.8 4,373,222 - +1.4 4,373,222 - -0.4 4,373,222 - +0.1 4,373,224 + -1.8 4,373,224 + -1.3 4,373,224 + +0.3 4,373,224 + +1.9 4,373,224 + +1.9 4,373,224 + -2.8 4,373,232 - -0.3 4,373,232 - +0.2 4,373,232 - +1.2 4,373,232 - +2.0 4,373,254 - +1.1 4,373,351 + MPMX20_04171 0.22 -2.8 4,373,388 + MPMX20_04171 0.44 -0.8 4,373,396 - MPMX20_04171 0.49 -3.8 4,373,396 - MPMX20_04171 0.49 -2.5 4,373,401 - MPMX20_04171 0.52 -3.1 4,373,463 + -1.7 4,373,463 + -3.2 4,373,468 + -1.3 4,373,468 + -0.2 4,373,471 - -1.4 4,373,471 - +1.0 4,373,471 - -2.7 4,373,481 + -3.2 4,373,504 + -3.5 4,373,504 + -0.8 4,373,544 - +0.3 4,373,551 - -1.4 4,373,565 + +2.3 4,373,572 - -2.1 4,373,573 + +1.0 4,373,584 + +3.3 4,373,595 + +3.4 4,373,595 + +1.0 4,373,603 - -1.1 4,373,603 - +1.5 4,373,603 - +0.3 4,373,603 - +0.7 4,373,603 - -2.0 4,373,659 + -0.2 4,373,696 + +0.8 4,373,696 + -0.8 4,373,704 - -0.4 4,373,704 - -1.1 4,373,726 + +0.6 4,373,829 + MPMX20_04172 0.10 +0.2 4,373,836 - MPMX20_04172 0.10 -0.2 4,373,849 - MPMX20_04172 0.11 -0.9 4,373,850 - MPMX20_04172 0.11 -2.4 4,373,889 + MPMX20_04172 0.13 -2.4 4,373,889 + MPMX20_04172 0.13 -3.4 4,373,911 + MPMX20_04172 0.14 -1.6 4,373,914 - MPMX20_04172 0.14 +0.1 4,373,919 - MPMX20_04172 0.14 +1.6 4,373,933 - MPMX20_04172 0.15 +0.3 4,374,019 + MPMX20_04172 0.19 +0.3 4,374,042 - MPMX20_04172 0.20 +0.1 4,374,126 - MPMX20_04172 0.24 +0.3
Or see this region's nucleotide sequence