Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03419

Experiment: Ethanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03418 and MPMX20_03419 are separated by 173 nucleotidesMPMX20_03419 and MPMX20_03420 are separated by 54 nucleotides MPMX20_03418: MPMX20_03418 - putative 3-phenylpropionic acid transporter, at 3,602,896 to 3,604,035 _03418 MPMX20_03419: MPMX20_03419 - Inner membrane protein YphA, at 3,604,209 to 3,604,631 _03419 MPMX20_03420: MPMX20_03420 - Serine hydroxymethyltransferase, at 3,604,686 to 3,605,939 _03420 Position (kb) 3604 3605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3603.240 kb on + strand, within MPMX20_03418at 3603.359 kb on + strand, within MPMX20_03418at 3603.478 kb on + strand, within MPMX20_03418at 3603.493 kb on - strand, within MPMX20_03418at 3603.547 kb on - strand, within MPMX20_03418at 3603.600 kb on + strand, within MPMX20_03418at 3603.600 kb on + strand, within MPMX20_03418at 3603.600 kb on + strand, within MPMX20_03418at 3603.608 kb on - strand, within MPMX20_03418at 3603.608 kb on - strand, within MPMX20_03418at 3603.608 kb on - strand, within MPMX20_03418at 3603.608 kb on - strand, within MPMX20_03418at 3603.654 kb on - strand, within MPMX20_03418at 3603.677 kb on + strand, within MPMX20_03418at 3603.689 kb on + strand, within MPMX20_03418at 3603.698 kb on + strand, within MPMX20_03418at 3603.723 kb on + strand, within MPMX20_03418at 3603.723 kb on + strand, within MPMX20_03418at 3603.785 kb on + strand, within MPMX20_03418at 3603.793 kb on - strand, within MPMX20_03418at 3603.796 kb on + strand, within MPMX20_03418at 3603.821 kb on + strand, within MPMX20_03418at 3603.896 kb on + strand, within MPMX20_03418at 3603.896 kb on + strand, within MPMX20_03418at 3603.939 kb on + strandat 3603.939 kb on + strandat 3603.944 kb on + strandat 3603.953 kb on + strandat 3603.998 kb on + strandat 3604.005 kb on + strandat 3604.005 kb on + strandat 3604.032 kb on - strandat 3604.041 kb on - strandat 3604.137 kb on + strandat 3604.145 kb on - strandat 3604.150 kb on - strandat 3604.150 kb on - strandat 3604.243 kb on + strandat 3604.243 kb on + strandat 3604.259 kb on - strand, within MPMX20_03419at 3604.267 kb on - strand, within MPMX20_03419at 3604.267 kb on - strand, within MPMX20_03419at 3604.306 kb on + strand, within MPMX20_03419at 3604.306 kb on + strand, within MPMX20_03419at 3604.306 kb on + strand, within MPMX20_03419at 3604.316 kb on + strand, within MPMX20_03419at 3604.322 kb on + strand, within MPMX20_03419at 3604.348 kb on - strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.355 kb on + strand, within MPMX20_03419at 3604.357 kb on + strand, within MPMX20_03419at 3604.360 kb on - strand, within MPMX20_03419at 3604.362 kb on + strand, within MPMX20_03419at 3604.363 kb on - strand, within MPMX20_03419at 3604.363 kb on - strand, within MPMX20_03419at 3604.363 kb on - strand, within MPMX20_03419at 3604.363 kb on - strand, within MPMX20_03419at 3604.363 kb on - strand, within MPMX20_03419at 3604.363 kb on - strand, within MPMX20_03419at 3604.363 kb on - strand, within MPMX20_03419at 3604.363 kb on - strand, within MPMX20_03419at 3604.369 kb on - strand, within MPMX20_03419at 3604.370 kb on - strand, within MPMX20_03419at 3604.394 kb on + strand, within MPMX20_03419at 3604.396 kb on + strand, within MPMX20_03419at 3604.401 kb on - strand, within MPMX20_03419at 3604.411 kb on + strand, within MPMX20_03419at 3604.445 kb on + strand, within MPMX20_03419at 3604.460 kb on - strand, within MPMX20_03419at 3604.460 kb on - strand, within MPMX20_03419at 3604.460 kb on - strand, within MPMX20_03419at 3604.465 kb on - strand, within MPMX20_03419at 3604.494 kb on + strand, within MPMX20_03419at 3604.499 kb on + strand, within MPMX20_03419at 3604.502 kb on + strand, within MPMX20_03419at 3604.504 kb on + strand, within MPMX20_03419at 3604.507 kb on - strand, within MPMX20_03419at 3604.519 kb on + strand, within MPMX20_03419at 3604.519 kb on + strand, within MPMX20_03419at 3604.544 kb on - strand, within MPMX20_03419at 3604.575 kb on + strand, within MPMX20_03419at 3604.615 kb on + strandat 3604.615 kb on + strandat 3604.615 kb on + strandat 3604.615 kb on + strandat 3604.618 kb on - strandat 3604.623 kb on - strandat 3604.623 kb on - strandat 3604.623 kb on - strandat 3604.623 kb on - strandat 3604.623 kb on - strandat 3604.623 kb on - strandat 3604.623 kb on - strandat 3604.625 kb on + strandat 3604.625 kb on + strandat 3604.625 kb on + strandat 3604.625 kb on + strandat 3604.633 kb on - strandat 3604.633 kb on - strandat 3604.633 kb on - strandat 3604.633 kb on - strandat 3604.633 kb on - strandat 3604.633 kb on - strandat 3604.633 kb on - strandat 3604.692 kb on - strandat 3604.697 kb on - strandat 3604.704 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
remove
3,603,240 + MPMX20_03418 0.30 -1.1
3,603,359 + MPMX20_03418 0.41 +0.7
3,603,478 + MPMX20_03418 0.51 -1.8
3,603,493 - MPMX20_03418 0.52 +0.8
3,603,547 - MPMX20_03418 0.57 +0.4
3,603,600 + MPMX20_03418 0.62 -0.8
3,603,600 + MPMX20_03418 0.62 +0.5
3,603,600 + MPMX20_03418 0.62 -0.6
3,603,608 - MPMX20_03418 0.62 -1.6
3,603,608 - MPMX20_03418 0.62 +1.1
3,603,608 - MPMX20_03418 0.62 +2.4
3,603,608 - MPMX20_03418 0.62 +0.3
3,603,654 - MPMX20_03418 0.66 -3.3
3,603,677 + MPMX20_03418 0.69 +0.7
3,603,689 + MPMX20_03418 0.70 +2.2
3,603,698 + MPMX20_03418 0.70 +1.4
3,603,723 + MPMX20_03418 0.73 -2.6
3,603,723 + MPMX20_03418 0.73 -2.2
3,603,785 + MPMX20_03418 0.78 +1.6
3,603,793 - MPMX20_03418 0.79 +1.1
3,603,796 + MPMX20_03418 0.79 +1.4
3,603,821 + MPMX20_03418 0.81 -2.0
3,603,896 + MPMX20_03418 0.88 +1.9
3,603,896 + MPMX20_03418 0.88 +0.0
3,603,939 + -3.1
3,603,939 + +1.1
3,603,944 + +1.1
3,603,953 + -0.4
3,603,998 + +0.7
3,604,005 + +0.5
3,604,005 + +3.4
3,604,032 - +0.2
3,604,041 - +0.2
3,604,137 + +1.7
3,604,145 - +0.4
3,604,150 - -2.6
3,604,150 - -0.8
3,604,243 + -2.5
3,604,243 + -1.7
3,604,259 - MPMX20_03419 0.12 +2.0
3,604,267 - MPMX20_03419 0.14 -3.0
3,604,267 - MPMX20_03419 0.14 -0.2
3,604,306 + MPMX20_03419 0.23 -2.3
3,604,306 + MPMX20_03419 0.23 +2.1
3,604,306 + MPMX20_03419 0.23 +3.9
3,604,316 + MPMX20_03419 0.25 +3.7
3,604,322 + MPMX20_03419 0.27 +0.8
3,604,348 - MPMX20_03419 0.33 -2.7
3,604,355 + MPMX20_03419 0.35 +0.4
3,604,355 + MPMX20_03419 0.35 +0.5
3,604,355 + MPMX20_03419 0.35 +3.5
3,604,355 + MPMX20_03419 0.35 +3.0
3,604,355 + MPMX20_03419 0.35 -3.3
3,604,355 + MPMX20_03419 0.35 -1.6
3,604,355 + MPMX20_03419 0.35 +0.7
3,604,355 + MPMX20_03419 0.35 -0.8
3,604,355 + MPMX20_03419 0.35 +0.6
3,604,355 + MPMX20_03419 0.35 -0.2
3,604,355 + MPMX20_03419 0.35 +2.2
3,604,357 + MPMX20_03419 0.35 +1.2
3,604,360 - MPMX20_03419 0.36 +0.6
3,604,362 + MPMX20_03419 0.36 -1.0
3,604,363 - MPMX20_03419 0.36 -1.3
3,604,363 - MPMX20_03419 0.36 +1.0
3,604,363 - MPMX20_03419 0.36 +0.8
3,604,363 - MPMX20_03419 0.36 -3.4
3,604,363 - MPMX20_03419 0.36 -2.5
3,604,363 - MPMX20_03419 0.36 +0.1
3,604,363 - MPMX20_03419 0.36 +2.5
3,604,363 - MPMX20_03419 0.36 +1.4
3,604,369 - MPMX20_03419 0.38 +0.7
3,604,370 - MPMX20_03419 0.38 +1.9
3,604,394 + MPMX20_03419 0.44 -1.6
3,604,396 + MPMX20_03419 0.44 -0.2
3,604,401 - MPMX20_03419 0.45 +2.2
3,604,411 + MPMX20_03419 0.48 +1.6
3,604,445 + MPMX20_03419 0.56 +1.0
3,604,460 - MPMX20_03419 0.59 +0.4
3,604,460 - MPMX20_03419 0.59 +1.4
3,604,460 - MPMX20_03419 0.59 +1.4
3,604,465 - MPMX20_03419 0.61 +1.2
3,604,494 + MPMX20_03419 0.67 +1.1
3,604,499 + MPMX20_03419 0.69 -0.8
3,604,502 + MPMX20_03419 0.69 +2.5
3,604,504 + MPMX20_03419 0.70 -0.1
3,604,507 - MPMX20_03419 0.70 -2.7
3,604,519 + MPMX20_03419 0.73 -3.7
3,604,519 + MPMX20_03419 0.73 +0.0
3,604,544 - MPMX20_03419 0.79 +4.1
3,604,575 + MPMX20_03419 0.87 -0.5
3,604,615 + +0.8
3,604,615 + +0.4
3,604,615 + -3.0
3,604,615 + +2.8
3,604,618 - -3.0
3,604,623 - +0.2
3,604,623 - -2.2
3,604,623 - +1.2
3,604,623 - +1.5
3,604,623 - -3.1
3,604,623 - -1.1
3,604,623 - -2.2
3,604,625 + -3.8
3,604,625 + +2.1
3,604,625 + -2.0
3,604,625 + +0.2
3,604,633 - -3.2
3,604,633 - +1.1
3,604,633 - -0.2
3,604,633 - +0.9
3,604,633 - +0.0
3,604,633 - -3.6
3,604,633 - +2.0
3,604,692 - +0.2
3,604,697 - -1.7
3,604,704 - -3.6

Or see this region's nucleotide sequence