Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03365 and MPMX20_03366 are separated by 41 nucleotides MPMX20_03366 and MPMX20_03367 are separated by 9 nucleotides MPMX20_03367 and MPMX20_03368 are separated by 14 nucleotides
MPMX20_03365: MPMX20_03365 - Purine ribonucleoside efflux pump NepI, at 3,540,850 to 3,542,067
_03365
MPMX20_03366: MPMX20_03366 - 5-deoxy-glucuronate isomerase, at 3,542,109 to 3,542,921
_03366
MPMX20_03367: MPMX20_03367 - Inosose dehydratase, at 3,542,931 to 3,543,821
_03367
MPMX20_03368: MPMX20_03368 - 5-dehydro-2-deoxygluconokinase, at 3,543,836 to 3,545,740
_03368
Position (kb)
3542
3543
3544 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3541.956 kb on + strand at 3542.009 kb on + strand at 3542.029 kb on - strand at 3542.062 kb on + strand at 3542.062 kb on + strand at 3542.062 kb on + strand at 3542.062 kb on + strand at 3542.062 kb on + strand at 3542.070 kb on - strand at 3542.070 kb on - strand at 3542.070 kb on - strand at 3542.070 kb on - strand at 3542.070 kb on - strand at 3542.115 kb on - strand at 3542.155 kb on - strand at 3542.176 kb on + strand at 3542.213 kb on - strand, within MPMX20_03366 at 3542.238 kb on - strand, within MPMX20_03366 at 3542.247 kb on - strand, within MPMX20_03366 at 3542.265 kb on + strand, within MPMX20_03366 at 3542.281 kb on + strand, within MPMX20_03366 at 3542.283 kb on - strand, within MPMX20_03366 at 3542.283 kb on - strand, within MPMX20_03366 at 3542.283 kb on - strand, within MPMX20_03366 at 3542.283 kb on - strand, within MPMX20_03366 at 3542.283 kb on - strand, within MPMX20_03366 at 3542.305 kb on + strand, within MPMX20_03366 at 3542.305 kb on + strand, within MPMX20_03366 at 3542.313 kb on - strand, within MPMX20_03366 at 3542.313 kb on - strand, within MPMX20_03366 at 3542.338 kb on + strand, within MPMX20_03366 at 3542.338 kb on + strand, within MPMX20_03366 at 3542.363 kb on + strand, within MPMX20_03366 at 3542.414 kb on + strand, within MPMX20_03366 at 3542.422 kb on - strand, within MPMX20_03366 at 3542.422 kb on - strand, within MPMX20_03366 at 3542.422 kb on - strand, within MPMX20_03366 at 3542.430 kb on + strand, within MPMX20_03366 at 3542.430 kb on + strand, within MPMX20_03366 at 3542.448 kb on - strand, within MPMX20_03366 at 3542.448 kb on - strand, within MPMX20_03366 at 3542.448 kb on - strand, within MPMX20_03366 at 3542.510 kb on + strand, within MPMX20_03366 at 3542.519 kb on - strand, within MPMX20_03366 at 3542.539 kb on + strand, within MPMX20_03366 at 3542.544 kb on + strand, within MPMX20_03366 at 3542.554 kb on + strand, within MPMX20_03366 at 3542.628 kb on + strand, within MPMX20_03366 at 3542.670 kb on - strand, within MPMX20_03366 at 3542.756 kb on + strand, within MPMX20_03366 at 3542.756 kb on + strand, within MPMX20_03366 at 3542.756 kb on + strand, within MPMX20_03366 at 3542.757 kb on + strand, within MPMX20_03366 at 3542.870 kb on + strand at 3542.870 kb on + strand at 3542.878 kb on - strand at 3542.878 kb on - strand at 3542.878 kb on - strand at 3542.929 kb on + strand at 3542.969 kb on - strand at 3542.970 kb on + strand at 3542.974 kb on - strand at 3542.976 kb on + strand at 3542.994 kb on - strand at 3543.096 kb on + strand, within MPMX20_03367 at 3543.119 kb on - strand, within MPMX20_03367 at 3543.176 kb on - strand, within MPMX20_03367 at 3543.198 kb on - strand, within MPMX20_03367 at 3543.225 kb on + strand, within MPMX20_03367 at 3543.228 kb on - strand, within MPMX20_03367 at 3543.271 kb on + strand, within MPMX20_03367 at 3543.301 kb on - strand, within MPMX20_03367 at 3543.347 kb on - strand, within MPMX20_03367 at 3543.401 kb on + strand, within MPMX20_03367 at 3543.424 kb on - strand, within MPMX20_03367 at 3543.436 kb on - strand, within MPMX20_03367 at 3543.499 kb on - strand, within MPMX20_03367 at 3543.524 kb on + strand, within MPMX20_03367 at 3543.558 kb on + strand, within MPMX20_03367 at 3543.566 kb on - strand, within MPMX20_03367 at 3543.589 kb on - strand, within MPMX20_03367 at 3543.677 kb on - strand, within MPMX20_03367 at 3543.695 kb on + strand, within MPMX20_03367 at 3543.695 kb on + strand, within MPMX20_03367 at 3543.727 kb on - strand, within MPMX20_03367 at 3543.742 kb on - strand at 3543.760 kb on - strand at 3543.784 kb on + strand at 3543.806 kb on - strand at 3543.833 kb on + strand at 3543.871 kb on + strand at 3543.871 kb on + strand at 3543.872 kb on - strand at 3543.943 kb on - strand at 3543.948 kb on + strand at 3543.948 kb on + strand at 3543.956 kb on - strand at 3543.956 kb on - strand at 3544.045 kb on + strand, within MPMX20_03368 at 3544.068 kb on - strand, within MPMX20_03368 at 3544.068 kb on - strand, within MPMX20_03368 at 3544.119 kb on + strand, within MPMX20_03368 at 3544.189 kb on + strand, within MPMX20_03368 at 3544.195 kb on + strand, within MPMX20_03368 at 3544.196 kb on - strand, within MPMX20_03368 at 3544.196 kb on - strand, within MPMX20_03368 at 3544.196 kb on - strand, within MPMX20_03368 at 3544.197 kb on - strand, within MPMX20_03368 at 3544.197 kb on - strand, within MPMX20_03368 at 3544.227 kb on - strand, within MPMX20_03368 at 3544.229 kb on - strand, within MPMX20_03368 at 3544.269 kb on + strand, within MPMX20_03368 at 3544.269 kb on + strand, within MPMX20_03368 at 3544.269 kb on + strand, within MPMX20_03368 at 3544.277 kb on - strand, within MPMX20_03368 at 3544.277 kb on - strand, within MPMX20_03368 at 3544.277 kb on - strand, within MPMX20_03368 at 3544.311 kb on - strand, within MPMX20_03368 at 3544.373 kb on + strand, within MPMX20_03368 at 3544.454 kb on + strand, within MPMX20_03368 at 3544.551 kb on + strand, within MPMX20_03368 at 3544.554 kb on - strand, within MPMX20_03368 at 3544.592 kb on + strand, within MPMX20_03368 at 3544.592 kb on + strand, within MPMX20_03368 at 3544.663 kb on + strand, within MPMX20_03368 at 3544.663 kb on + strand, within MPMX20_03368 at 3544.663 kb on + strand, within MPMX20_03368 at 3544.663 kb on + strand, within MPMX20_03368 at 3544.671 kb on - strand, within MPMX20_03368 at 3544.671 kb on - strand, within MPMX20_03368 at 3544.671 kb on - strand, within MPMX20_03368 at 3544.714 kb on - strand, within MPMX20_03368 at 3544.781 kb on - strand, within MPMX20_03368 at 3544.781 kb on - strand, within MPMX20_03368
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 3,541,956 + -1.0 3,542,009 + -0.5 3,542,029 - -3.2 3,542,062 + +0.4 3,542,062 + -3.0 3,542,062 + +0.6 3,542,062 + -0.1 3,542,062 + +1.1 3,542,070 - -2.8 3,542,070 - +0.6 3,542,070 - -0.7 3,542,070 - +2.0 3,542,070 - -3.4 3,542,115 - -1.6 3,542,155 - -0.3 3,542,176 + +1.5 3,542,213 - MPMX20_03366 0.13 +1.0 3,542,238 - MPMX20_03366 0.16 +1.1 3,542,247 - MPMX20_03366 0.17 +0.5 3,542,265 + MPMX20_03366 0.19 -0.7 3,542,281 + MPMX20_03366 0.21 -2.2 3,542,283 - MPMX20_03366 0.21 -1.7 3,542,283 - MPMX20_03366 0.21 -3.0 3,542,283 - MPMX20_03366 0.21 +2.8 3,542,283 - MPMX20_03366 0.21 -4.1 3,542,283 - MPMX20_03366 0.21 -1.6 3,542,305 + MPMX20_03366 0.24 -2.3 3,542,305 + MPMX20_03366 0.24 -0.6 3,542,313 - MPMX20_03366 0.25 -1.7 3,542,313 - MPMX20_03366 0.25 +0.1 3,542,338 + MPMX20_03366 0.28 +1.0 3,542,338 + MPMX20_03366 0.28 +1.0 3,542,363 + MPMX20_03366 0.31 +1.5 3,542,414 + MPMX20_03366 0.38 +1.5 3,542,422 - MPMX20_03366 0.38 +1.1 3,542,422 - MPMX20_03366 0.38 +3.3 3,542,422 - MPMX20_03366 0.38 +2.9 3,542,430 + MPMX20_03366 0.39 +0.3 3,542,430 + MPMX20_03366 0.39 -2.7 3,542,448 - MPMX20_03366 0.42 +3.1 3,542,448 - MPMX20_03366 0.42 +0.7 3,542,448 - MPMX20_03366 0.42 +3.4 3,542,510 + MPMX20_03366 0.49 -3.6 3,542,519 - MPMX20_03366 0.50 +0.2 3,542,539 + MPMX20_03366 0.53 +0.2 3,542,544 + MPMX20_03366 0.54 +1.1 3,542,554 + MPMX20_03366 0.55 -1.1 3,542,628 + MPMX20_03366 0.64 -2.0 3,542,670 - MPMX20_03366 0.69 -0.9 3,542,756 + MPMX20_03366 0.80 -0.3 3,542,756 + MPMX20_03366 0.80 +1.5 3,542,756 + MPMX20_03366 0.80 +1.0 3,542,757 + MPMX20_03366 0.80 +0.2 3,542,870 + +0.3 3,542,870 + -2.1 3,542,878 - +0.8 3,542,878 - -3.5 3,542,878 - +2.3 3,542,929 + -1.2 3,542,969 - +2.1 3,542,970 + +0.4 3,542,974 - +0.1 3,542,976 + -0.8 3,542,994 - +1.0 3,543,096 + MPMX20_03367 0.19 -3.9 3,543,119 - MPMX20_03367 0.21 -3.3 3,543,176 - MPMX20_03367 0.27 +0.3 3,543,198 - MPMX20_03367 0.30 -2.1 3,543,225 + MPMX20_03367 0.33 -0.7 3,543,228 - MPMX20_03367 0.33 -2.6 3,543,271 + MPMX20_03367 0.38 -1.0 3,543,301 - MPMX20_03367 0.42 -1.1 3,543,347 - MPMX20_03367 0.47 -0.3 3,543,401 + MPMX20_03367 0.53 +1.5 3,543,424 - MPMX20_03367 0.55 +0.3 3,543,436 - MPMX20_03367 0.57 +1.7 3,543,499 - MPMX20_03367 0.64 -1.2 3,543,524 + MPMX20_03367 0.67 -1.2 3,543,558 + MPMX20_03367 0.70 -0.3 3,543,566 - MPMX20_03367 0.71 -0.9 3,543,589 - MPMX20_03367 0.74 -0.5 3,543,677 - MPMX20_03367 0.84 -2.1 3,543,695 + MPMX20_03367 0.86 +1.8 3,543,695 + MPMX20_03367 0.86 -3.9 3,543,727 - MPMX20_03367 0.89 -3.4 3,543,742 - +2.8 3,543,760 - +0.1 3,543,784 + -2.8 3,543,806 - -3.0 3,543,833 + +1.5 3,543,871 + -1.6 3,543,871 + -0.3 3,543,872 - +0.2 3,543,943 - -2.8 3,543,948 + +1.2 3,543,948 + -3.4 3,543,956 - -1.7 3,543,956 - -1.7 3,544,045 + MPMX20_03368 0.11 +1.9 3,544,068 - MPMX20_03368 0.12 +2.1 3,544,068 - MPMX20_03368 0.12 -3.5 3,544,119 + MPMX20_03368 0.15 +1.1 3,544,189 + MPMX20_03368 0.19 +0.3 3,544,195 + MPMX20_03368 0.19 +1.8 3,544,196 - MPMX20_03368 0.19 +1.1 3,544,196 - MPMX20_03368 0.19 -2.3 3,544,196 - MPMX20_03368 0.19 -3.9 3,544,197 - MPMX20_03368 0.19 +2.9 3,544,197 - MPMX20_03368 0.19 -2.7 3,544,227 - MPMX20_03368 0.21 -3.9 3,544,229 - MPMX20_03368 0.21 +0.8 3,544,269 + MPMX20_03368 0.23 +0.7 3,544,269 + MPMX20_03368 0.23 -0.9 3,544,269 + MPMX20_03368 0.23 -1.3 3,544,277 - MPMX20_03368 0.23 +0.4 3,544,277 - MPMX20_03368 0.23 -1.7 3,544,277 - MPMX20_03368 0.23 -1.3 3,544,311 - MPMX20_03368 0.25 +2.0 3,544,373 + MPMX20_03368 0.28 -0.3 3,544,454 + MPMX20_03368 0.32 -0.9 3,544,551 + MPMX20_03368 0.38 +1.7 3,544,554 - MPMX20_03368 0.38 -2.4 3,544,592 + MPMX20_03368 0.40 +2.8 3,544,592 + MPMX20_03368 0.40 +3.1 3,544,663 + MPMX20_03368 0.43 +0.9 3,544,663 + MPMX20_03368 0.43 -2.0 3,544,663 + MPMX20_03368 0.43 -1.7 3,544,663 + MPMX20_03368 0.43 +1.8 3,544,671 - MPMX20_03368 0.44 +0.9 3,544,671 - MPMX20_03368 0.44 -0.5 3,544,671 - MPMX20_03368 0.44 -0.7 3,544,714 - MPMX20_03368 0.46 -2.6 3,544,781 - MPMX20_03368 0.50 +0.9 3,544,781 - MPMX20_03368 0.50 +2.1
Or see this region's nucleotide sequence