Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03367

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03365 and MPMX20_03366 are separated by 41 nucleotidesMPMX20_03366 and MPMX20_03367 are separated by 9 nucleotidesMPMX20_03367 and MPMX20_03368 are separated by 14 nucleotides MPMX20_03365: MPMX20_03365 - Purine ribonucleoside efflux pump NepI, at 3,540,850 to 3,542,067 _03365 MPMX20_03366: MPMX20_03366 - 5-deoxy-glucuronate isomerase, at 3,542,109 to 3,542,921 _03366 MPMX20_03367: MPMX20_03367 - Inosose dehydratase, at 3,542,931 to 3,543,821 _03367 MPMX20_03368: MPMX20_03368 - 5-dehydro-2-deoxygluconokinase, at 3,543,836 to 3,545,740 _03368 Position (kb) 3542 3543 3544Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3541.956 kb on + strandat 3542.009 kb on + strandat 3542.029 kb on - strandat 3542.062 kb on + strandat 3542.062 kb on + strandat 3542.062 kb on + strandat 3542.062 kb on + strandat 3542.062 kb on + strandat 3542.070 kb on - strandat 3542.070 kb on - strandat 3542.070 kb on - strandat 3542.070 kb on - strandat 3542.070 kb on - strandat 3542.115 kb on - strandat 3542.155 kb on - strandat 3542.176 kb on + strandat 3542.213 kb on - strand, within MPMX20_03366at 3542.238 kb on - strand, within MPMX20_03366at 3542.247 kb on - strand, within MPMX20_03366at 3542.265 kb on + strand, within MPMX20_03366at 3542.281 kb on + strand, within MPMX20_03366at 3542.283 kb on - strand, within MPMX20_03366at 3542.283 kb on - strand, within MPMX20_03366at 3542.283 kb on - strand, within MPMX20_03366at 3542.283 kb on - strand, within MPMX20_03366at 3542.283 kb on - strand, within MPMX20_03366at 3542.305 kb on + strand, within MPMX20_03366at 3542.305 kb on + strand, within MPMX20_03366at 3542.313 kb on - strand, within MPMX20_03366at 3542.313 kb on - strand, within MPMX20_03366at 3542.338 kb on + strand, within MPMX20_03366at 3542.338 kb on + strand, within MPMX20_03366at 3542.363 kb on + strand, within MPMX20_03366at 3542.414 kb on + strand, within MPMX20_03366at 3542.422 kb on - strand, within MPMX20_03366at 3542.422 kb on - strand, within MPMX20_03366at 3542.422 kb on - strand, within MPMX20_03366at 3542.430 kb on + strand, within MPMX20_03366at 3542.430 kb on + strand, within MPMX20_03366at 3542.448 kb on - strand, within MPMX20_03366at 3542.448 kb on - strand, within MPMX20_03366at 3542.448 kb on - strand, within MPMX20_03366at 3542.510 kb on + strand, within MPMX20_03366at 3542.519 kb on - strand, within MPMX20_03366at 3542.539 kb on + strand, within MPMX20_03366at 3542.544 kb on + strand, within MPMX20_03366at 3542.554 kb on + strand, within MPMX20_03366at 3542.628 kb on + strand, within MPMX20_03366at 3542.670 kb on - strand, within MPMX20_03366at 3542.756 kb on + strand, within MPMX20_03366at 3542.756 kb on + strand, within MPMX20_03366at 3542.756 kb on + strand, within MPMX20_03366at 3542.757 kb on + strand, within MPMX20_03366at 3542.870 kb on + strandat 3542.870 kb on + strandat 3542.878 kb on - strandat 3542.878 kb on - strandat 3542.878 kb on - strandat 3542.929 kb on + strandat 3542.969 kb on - strandat 3542.970 kb on + strandat 3542.974 kb on - strandat 3542.976 kb on + strandat 3542.994 kb on - strandat 3543.096 kb on + strand, within MPMX20_03367at 3543.119 kb on - strand, within MPMX20_03367at 3543.176 kb on - strand, within MPMX20_03367at 3543.198 kb on - strand, within MPMX20_03367at 3543.225 kb on + strand, within MPMX20_03367at 3543.228 kb on - strand, within MPMX20_03367at 3543.271 kb on + strand, within MPMX20_03367at 3543.301 kb on - strand, within MPMX20_03367at 3543.347 kb on - strand, within MPMX20_03367at 3543.401 kb on + strand, within MPMX20_03367at 3543.424 kb on - strand, within MPMX20_03367at 3543.436 kb on - strand, within MPMX20_03367at 3543.499 kb on - strand, within MPMX20_03367at 3543.524 kb on + strand, within MPMX20_03367at 3543.558 kb on + strand, within MPMX20_03367at 3543.566 kb on - strand, within MPMX20_03367at 3543.589 kb on - strand, within MPMX20_03367at 3543.677 kb on - strand, within MPMX20_03367at 3543.695 kb on + strand, within MPMX20_03367at 3543.695 kb on + strand, within MPMX20_03367at 3543.727 kb on - strand, within MPMX20_03367at 3543.742 kb on - strandat 3543.760 kb on - strandat 3543.784 kb on + strandat 3543.806 kb on - strandat 3543.833 kb on + strandat 3543.871 kb on + strandat 3543.871 kb on + strandat 3543.872 kb on - strandat 3543.943 kb on - strandat 3543.948 kb on + strandat 3543.948 kb on + strandat 3543.956 kb on - strandat 3543.956 kb on - strandat 3544.045 kb on + strand, within MPMX20_03368at 3544.068 kb on - strand, within MPMX20_03368at 3544.068 kb on - strand, within MPMX20_03368at 3544.119 kb on + strand, within MPMX20_03368at 3544.189 kb on + strand, within MPMX20_03368at 3544.195 kb on + strand, within MPMX20_03368at 3544.196 kb on - strand, within MPMX20_03368at 3544.196 kb on - strand, within MPMX20_03368at 3544.196 kb on - strand, within MPMX20_03368at 3544.197 kb on - strand, within MPMX20_03368at 3544.197 kb on - strand, within MPMX20_03368at 3544.227 kb on - strand, within MPMX20_03368at 3544.229 kb on - strand, within MPMX20_03368at 3544.269 kb on + strand, within MPMX20_03368at 3544.269 kb on + strand, within MPMX20_03368at 3544.269 kb on + strand, within MPMX20_03368at 3544.277 kb on - strand, within MPMX20_03368at 3544.277 kb on - strand, within MPMX20_03368at 3544.277 kb on - strand, within MPMX20_03368at 3544.311 kb on - strand, within MPMX20_03368at 3544.373 kb on + strand, within MPMX20_03368at 3544.454 kb on + strand, within MPMX20_03368at 3544.551 kb on + strand, within MPMX20_03368at 3544.554 kb on - strand, within MPMX20_03368at 3544.592 kb on + strand, within MPMX20_03368at 3544.592 kb on + strand, within MPMX20_03368at 3544.663 kb on + strand, within MPMX20_03368at 3544.663 kb on + strand, within MPMX20_03368at 3544.663 kb on + strand, within MPMX20_03368at 3544.663 kb on + strand, within MPMX20_03368at 3544.671 kb on - strand, within MPMX20_03368at 3544.671 kb on - strand, within MPMX20_03368at 3544.671 kb on - strand, within MPMX20_03368at 3544.714 kb on - strand, within MPMX20_03368at 3544.781 kb on - strand, within MPMX20_03368at 3544.781 kb on - strand, within MPMX20_03368

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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3,541,956 + -1.0
3,542,009 + -0.5
3,542,029 - -3.2
3,542,062 + +0.4
3,542,062 + -3.0
3,542,062 + +0.6
3,542,062 + -0.1
3,542,062 + +1.1
3,542,070 - -2.8
3,542,070 - +0.6
3,542,070 - -0.7
3,542,070 - +2.0
3,542,070 - -3.4
3,542,115 - -1.6
3,542,155 - -0.3
3,542,176 + +1.5
3,542,213 - MPMX20_03366 0.13 +1.0
3,542,238 - MPMX20_03366 0.16 +1.1
3,542,247 - MPMX20_03366 0.17 +0.5
3,542,265 + MPMX20_03366 0.19 -0.7
3,542,281 + MPMX20_03366 0.21 -2.2
3,542,283 - MPMX20_03366 0.21 -1.7
3,542,283 - MPMX20_03366 0.21 -3.0
3,542,283 - MPMX20_03366 0.21 +2.8
3,542,283 - MPMX20_03366 0.21 -4.1
3,542,283 - MPMX20_03366 0.21 -1.6
3,542,305 + MPMX20_03366 0.24 -2.3
3,542,305 + MPMX20_03366 0.24 -0.6
3,542,313 - MPMX20_03366 0.25 -1.7
3,542,313 - MPMX20_03366 0.25 +0.1
3,542,338 + MPMX20_03366 0.28 +1.0
3,542,338 + MPMX20_03366 0.28 +1.0
3,542,363 + MPMX20_03366 0.31 +1.5
3,542,414 + MPMX20_03366 0.38 +1.5
3,542,422 - MPMX20_03366 0.38 +1.1
3,542,422 - MPMX20_03366 0.38 +3.3
3,542,422 - MPMX20_03366 0.38 +2.9
3,542,430 + MPMX20_03366 0.39 +0.3
3,542,430 + MPMX20_03366 0.39 -2.7
3,542,448 - MPMX20_03366 0.42 +3.1
3,542,448 - MPMX20_03366 0.42 +0.7
3,542,448 - MPMX20_03366 0.42 +3.4
3,542,510 + MPMX20_03366 0.49 -3.6
3,542,519 - MPMX20_03366 0.50 +0.2
3,542,539 + MPMX20_03366 0.53 +0.2
3,542,544 + MPMX20_03366 0.54 +1.1
3,542,554 + MPMX20_03366 0.55 -1.1
3,542,628 + MPMX20_03366 0.64 -2.0
3,542,670 - MPMX20_03366 0.69 -0.9
3,542,756 + MPMX20_03366 0.80 -0.3
3,542,756 + MPMX20_03366 0.80 +1.5
3,542,756 + MPMX20_03366 0.80 +1.0
3,542,757 + MPMX20_03366 0.80 +0.2
3,542,870 + +0.3
3,542,870 + -2.1
3,542,878 - +0.8
3,542,878 - -3.5
3,542,878 - +2.3
3,542,929 + -1.2
3,542,969 - +2.1
3,542,970 + +0.4
3,542,974 - +0.1
3,542,976 + -0.8
3,542,994 - +1.0
3,543,096 + MPMX20_03367 0.19 -3.9
3,543,119 - MPMX20_03367 0.21 -3.3
3,543,176 - MPMX20_03367 0.27 +0.3
3,543,198 - MPMX20_03367 0.30 -2.1
3,543,225 + MPMX20_03367 0.33 -0.7
3,543,228 - MPMX20_03367 0.33 -2.6
3,543,271 + MPMX20_03367 0.38 -1.0
3,543,301 - MPMX20_03367 0.42 -1.1
3,543,347 - MPMX20_03367 0.47 -0.3
3,543,401 + MPMX20_03367 0.53 +1.5
3,543,424 - MPMX20_03367 0.55 +0.3
3,543,436 - MPMX20_03367 0.57 +1.7
3,543,499 - MPMX20_03367 0.64 -1.2
3,543,524 + MPMX20_03367 0.67 -1.2
3,543,558 + MPMX20_03367 0.70 -0.3
3,543,566 - MPMX20_03367 0.71 -0.9
3,543,589 - MPMX20_03367 0.74 -0.5
3,543,677 - MPMX20_03367 0.84 -2.1
3,543,695 + MPMX20_03367 0.86 +1.8
3,543,695 + MPMX20_03367 0.86 -3.9
3,543,727 - MPMX20_03367 0.89 -3.4
3,543,742 - +2.8
3,543,760 - +0.1
3,543,784 + -2.8
3,543,806 - -3.0
3,543,833 + +1.5
3,543,871 + -1.6
3,543,871 + -0.3
3,543,872 - +0.2
3,543,943 - -2.8
3,543,948 + +1.2
3,543,948 + -3.4
3,543,956 - -1.7
3,543,956 - -1.7
3,544,045 + MPMX20_03368 0.11 +1.9
3,544,068 - MPMX20_03368 0.12 +2.1
3,544,068 - MPMX20_03368 0.12 -3.5
3,544,119 + MPMX20_03368 0.15 +1.1
3,544,189 + MPMX20_03368 0.19 +0.3
3,544,195 + MPMX20_03368 0.19 +1.8
3,544,196 - MPMX20_03368 0.19 +1.1
3,544,196 - MPMX20_03368 0.19 -2.3
3,544,196 - MPMX20_03368 0.19 -3.9
3,544,197 - MPMX20_03368 0.19 +2.9
3,544,197 - MPMX20_03368 0.19 -2.7
3,544,227 - MPMX20_03368 0.21 -3.9
3,544,229 - MPMX20_03368 0.21 +0.8
3,544,269 + MPMX20_03368 0.23 +0.7
3,544,269 + MPMX20_03368 0.23 -0.9
3,544,269 + MPMX20_03368 0.23 -1.3
3,544,277 - MPMX20_03368 0.23 +0.4
3,544,277 - MPMX20_03368 0.23 -1.7
3,544,277 - MPMX20_03368 0.23 -1.3
3,544,311 - MPMX20_03368 0.25 +2.0
3,544,373 + MPMX20_03368 0.28 -0.3
3,544,454 + MPMX20_03368 0.32 -0.9
3,544,551 + MPMX20_03368 0.38 +1.7
3,544,554 - MPMX20_03368 0.38 -2.4
3,544,592 + MPMX20_03368 0.40 +2.8
3,544,592 + MPMX20_03368 0.40 +3.1
3,544,663 + MPMX20_03368 0.43 +0.9
3,544,663 + MPMX20_03368 0.43 -2.0
3,544,663 + MPMX20_03368 0.43 -1.7
3,544,663 + MPMX20_03368 0.43 +1.8
3,544,671 - MPMX20_03368 0.44 +0.9
3,544,671 - MPMX20_03368 0.44 -0.5
3,544,671 - MPMX20_03368 0.44 -0.7
3,544,714 - MPMX20_03368 0.46 -2.6
3,544,781 - MPMX20_03368 0.50 +0.9
3,544,781 - MPMX20_03368 0.50 +2.1

Or see this region's nucleotide sequence