Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03450

Experiment: oxalate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03449 and MPMX20_03450 are separated by 45 nucleotidesMPMX20_03450 and MPMX20_03451 are separated by 204 nucleotidesMPMX20_03451 and MPMX20_03452 are separated by 69 nucleotides MPMX20_03449: MPMX20_03449 - Uracil-DNA glycosylase, at 3,636,688 to 3,637,377 _03449 MPMX20_03450: MPMX20_03450 - putative tRNA/rRNA methyltransferase YfiF, at 3,637,423 to 3,638,508 _03450 MPMX20_03451: MPMX20_03451 - Thioredoxin 2, at 3,638,713 to 3,639,132 _03451 MPMX20_03452: MPMX20_03452 - hypothetical protein, at 3,639,202 to 3,639,900 _03452 Position (kb) 3637 3638 3639Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3636.648 kb on + strandat 3636.655 kb on - strandat 3636.659 kb on + strandat 3636.755 kb on - strandat 3636.790 kb on - strand, within MPMX20_03449at 3636.934 kb on - strand, within MPMX20_03449at 3636.935 kb on + strand, within MPMX20_03449at 3636.992 kb on + strand, within MPMX20_03449at 3637.000 kb on - strand, within MPMX20_03449at 3637.015 kb on - strand, within MPMX20_03449at 3637.067 kb on - strand, within MPMX20_03449at 3637.099 kb on + strand, within MPMX20_03449at 3637.099 kb on + strand, within MPMX20_03449at 3637.099 kb on + strand, within MPMX20_03449at 3637.233 kb on + strand, within MPMX20_03449at 3637.241 kb on - strand, within MPMX20_03449at 3637.370 kb on - strandat 3637.372 kb on + strandat 3637.411 kb on - strandat 3637.420 kb on + strandat 3637.428 kb on - strandat 3637.428 kb on - strandat 3637.456 kb on + strandat 3637.519 kb on + strandat 3637.544 kb on + strand, within MPMX20_03450at 3637.596 kb on + strand, within MPMX20_03450at 3637.671 kb on + strand, within MPMX20_03450at 3637.679 kb on - strand, within MPMX20_03450at 3637.724 kb on - strand, within MPMX20_03450at 3637.772 kb on + strand, within MPMX20_03450at 3637.780 kb on - strand, within MPMX20_03450at 3637.843 kb on + strand, within MPMX20_03450at 3637.887 kb on + strand, within MPMX20_03450at 3637.895 kb on - strand, within MPMX20_03450at 3637.895 kb on - strand, within MPMX20_03450at 3637.895 kb on - strand, within MPMX20_03450at 3637.897 kb on + strand, within MPMX20_03450at 3637.936 kb on + strand, within MPMX20_03450at 3637.961 kb on - strand, within MPMX20_03450at 3637.982 kb on + strand, within MPMX20_03450at 3637.995 kb on + strand, within MPMX20_03450at 3638.003 kb on + strand, within MPMX20_03450at 3638.011 kb on - strand, within MPMX20_03450at 3638.011 kb on - strand, within MPMX20_03450at 3638.011 kb on - strand, within MPMX20_03450at 3638.011 kb on - strand, within MPMX20_03450at 3638.021 kb on + strand, within MPMX20_03450at 3638.029 kb on - strand, within MPMX20_03450at 3638.057 kb on - strand, within MPMX20_03450at 3638.057 kb on - strand, within MPMX20_03450at 3638.069 kb on - strand, within MPMX20_03450at 3638.090 kb on + strand, within MPMX20_03450at 3638.093 kb on - strand, within MPMX20_03450at 3638.093 kb on - strand, within MPMX20_03450at 3638.098 kb on - strand, within MPMX20_03450at 3638.104 kb on - strand, within MPMX20_03450at 3638.104 kb on - strand, within MPMX20_03450at 3638.311 kb on + strand, within MPMX20_03450at 3638.406 kb on - strandat 3638.445 kb on + strandat 3638.468 kb on + strandat 3638.468 kb on + strandat 3638.468 kb on + strandat 3638.476 kb on - strandat 3638.476 kb on - strandat 3638.476 kb on - strandat 3638.531 kb on - strandat 3638.553 kb on + strandat 3638.593 kb on + strandat 3638.593 kb on + strandat 3638.601 kb on - strandat 3638.648 kb on + strandat 3638.656 kb on - strandat 3638.698 kb on + strandat 3638.698 kb on + strandat 3638.707 kb on - strandat 3638.710 kb on + strandat 3638.718 kb on - strandat 3638.718 kb on - strandat 3638.751 kb on + strandat 3638.798 kb on + strand, within MPMX20_03451at 3638.798 kb on + strand, within MPMX20_03451at 3638.798 kb on + strand, within MPMX20_03451at 3638.798 kb on + strand, within MPMX20_03451at 3638.845 kb on - strand, within MPMX20_03451at 3638.845 kb on - strand, within MPMX20_03451at 3638.900 kb on + strand, within MPMX20_03451at 3638.908 kb on - strand, within MPMX20_03451at 3638.913 kb on - strand, within MPMX20_03451at 3638.979 kb on + strand, within MPMX20_03451at 3639.072 kb on - strand, within MPMX20_03451at 3639.075 kb on + strand, within MPMX20_03451at 3639.133 kb on + strandat 3639.154 kb on + strandat 3639.159 kb on + strandat 3639.167 kb on - strandat 3639.206 kb on - strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.335 kb on + strand, within MPMX20_03452at 3639.343 kb on - strand, within MPMX20_03452at 3639.348 kb on - strand, within MPMX20_03452at 3639.373 kb on + strand, within MPMX20_03452at 3639.381 kb on - strand, within MPMX20_03452at 3639.464 kb on + strand, within MPMX20_03452at 3639.486 kb on + strand, within MPMX20_03452

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction oxalate (C)
remove
3,636,648 + -0.1
3,636,655 - -1.7
3,636,659 + -2.6
3,636,755 - -3.2
3,636,790 - MPMX20_03449 0.15 -0.2
3,636,934 - MPMX20_03449 0.36 -0.5
3,636,935 + MPMX20_03449 0.36 +1.5
3,636,992 + MPMX20_03449 0.44 -3.9
3,637,000 - MPMX20_03449 0.45 -2.9
3,637,015 - MPMX20_03449 0.47 +1.1
3,637,067 - MPMX20_03449 0.55 +1.0
3,637,099 + MPMX20_03449 0.60 -3.9
3,637,099 + MPMX20_03449 0.60 +0.1
3,637,099 + MPMX20_03449 0.60 +0.6
3,637,233 + MPMX20_03449 0.79 -2.6
3,637,241 - MPMX20_03449 0.80 -0.3
3,637,370 - +0.1
3,637,372 + -0.7
3,637,411 - -0.8
3,637,420 + +0.5
3,637,428 - -1.8
3,637,428 - -1.2
3,637,456 + +0.5
3,637,519 + -1.1
3,637,544 + MPMX20_03450 0.11 +1.7
3,637,596 + MPMX20_03450 0.16 +0.8
3,637,671 + MPMX20_03450 0.23 +0.4
3,637,679 - MPMX20_03450 0.24 +1.4
3,637,724 - MPMX20_03450 0.28 -0.7
3,637,772 + MPMX20_03450 0.32 +1.5
3,637,780 - MPMX20_03450 0.33 -0.3
3,637,843 + MPMX20_03450 0.39 +1.3
3,637,887 + MPMX20_03450 0.43 -0.1
3,637,895 - MPMX20_03450 0.43 -0.0
3,637,895 - MPMX20_03450 0.43 -0.8
3,637,895 - MPMX20_03450 0.43 +1.0
3,637,897 + MPMX20_03450 0.44 -0.6
3,637,936 + MPMX20_03450 0.47 +0.8
3,637,961 - MPMX20_03450 0.50 +1.0
3,637,982 + MPMX20_03450 0.51 -0.2
3,637,995 + MPMX20_03450 0.53 +2.4
3,638,003 + MPMX20_03450 0.53 +2.2
3,638,011 - MPMX20_03450 0.54 +2.3
3,638,011 - MPMX20_03450 0.54 +0.3
3,638,011 - MPMX20_03450 0.54 -1.2
3,638,011 - MPMX20_03450 0.54 +0.8
3,638,021 + MPMX20_03450 0.55 +0.9
3,638,029 - MPMX20_03450 0.56 -0.9
3,638,057 - MPMX20_03450 0.58 -1.1
3,638,057 - MPMX20_03450 0.58 +0.4
3,638,069 - MPMX20_03450 0.59 +2.0
3,638,090 + MPMX20_03450 0.61 +2.6
3,638,093 - MPMX20_03450 0.62 -0.6
3,638,093 - MPMX20_03450 0.62 -0.1
3,638,098 - MPMX20_03450 0.62 +1.3
3,638,104 - MPMX20_03450 0.63 +1.2
3,638,104 - MPMX20_03450 0.63 +0.1
3,638,311 + MPMX20_03450 0.82 +1.3
3,638,406 - +0.5
3,638,445 + -0.2
3,638,468 + +1.7
3,638,468 + -1.2
3,638,468 + -3.4
3,638,476 - -0.5
3,638,476 - -3.8
3,638,476 - +0.3
3,638,531 - -1.1
3,638,553 + +0.9
3,638,593 + +0.9
3,638,593 + -0.0
3,638,601 - -1.3
3,638,648 + +0.1
3,638,656 - -2.0
3,638,698 + +0.6
3,638,698 + +0.6
3,638,707 - +1.1
3,638,710 + -0.2
3,638,718 - -0.1
3,638,718 - -0.5
3,638,751 + +2.8
3,638,798 + MPMX20_03451 0.20 -2.2
3,638,798 + MPMX20_03451 0.20 -1.2
3,638,798 + MPMX20_03451 0.20 +1.3
3,638,798 + MPMX20_03451 0.20 -1.2
3,638,845 - MPMX20_03451 0.31 +0.1
3,638,845 - MPMX20_03451 0.31 +0.2
3,638,900 + MPMX20_03451 0.45 -0.1
3,638,908 - MPMX20_03451 0.46 -0.7
3,638,913 - MPMX20_03451 0.48 -0.7
3,638,979 + MPMX20_03451 0.63 +1.3
3,639,072 - MPMX20_03451 0.85 +3.2
3,639,075 + MPMX20_03451 0.86 -0.2
3,639,133 + -0.2
3,639,154 + -0.0
3,639,159 + +0.6
3,639,167 - +1.4
3,639,206 - -0.1
3,639,238 + -3.8
3,639,238 + +0.8
3,639,238 + -1.7
3,639,238 + -1.5
3,639,238 + +0.1
3,639,238 + +1.2
3,639,238 + +1.8
3,639,246 - -0.7
3,639,246 - +0.1
3,639,246 - -0.3
3,639,246 - -2.9
3,639,246 - -0.9
3,639,246 - -1.6
3,639,246 - +1.4
3,639,335 + MPMX20_03452 0.19 -2.7
3,639,343 - MPMX20_03452 0.20 -1.0
3,639,348 - MPMX20_03452 0.21 +0.5
3,639,373 + MPMX20_03452 0.24 -1.6
3,639,381 - MPMX20_03452 0.26 +0.1
3,639,464 + MPMX20_03452 0.37 +0.7
3,639,486 + MPMX20_03452 0.41 +0.0

Or see this region's nucleotide sequence