Experiment: oxalate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01493 and MPMX20_01494 are separated by 63 nucleotides MPMX20_01494 and MPMX20_01495 are separated by 351 nucleotides
MPMX20_01493: MPMX20_01493 - Ribosomal protein S6--L-glutamate ligase, at 1,562,438 to 1,563,340
_01493
MPMX20_01494: MPMX20_01494 - putative protein YbjN, at 1,563,404 to 1,563,880
_01494
MPMX20_01495: MPMX20_01495 - Putrescine-binding periplasmic protein, at 1,564,232 to 1,565,344
_01495
Position (kb)
1563
1564 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1562.420 kb on + strand at 1562.556 kb on + strand, within MPMX20_01493 at 1562.599 kb on - strand, within MPMX20_01493 at 1562.642 kb on - strand, within MPMX20_01493 at 1562.714 kb on + strand, within MPMX20_01493 at 1562.777 kb on - strand, within MPMX20_01493 at 1562.863 kb on + strand, within MPMX20_01493 at 1562.886 kb on - strand, within MPMX20_01493 at 1563.056 kb on - strand, within MPMX20_01493 at 1563.074 kb on + strand, within MPMX20_01493 at 1563.082 kb on - strand, within MPMX20_01493 at 1563.296 kb on - strand at 1563.420 kb on + strand at 1563.430 kb on + strand at 1563.507 kb on - strand, within MPMX20_01494 at 1563.553 kb on + strand, within MPMX20_01494 at 1563.561 kb on - strand, within MPMX20_01494 at 1563.569 kb on - strand, within MPMX20_01494 at 1563.574 kb on - strand, within MPMX20_01494 at 1563.576 kb on - strand, within MPMX20_01494 at 1563.581 kb on - strand, within MPMX20_01494 at 1563.581 kb on - strand, within MPMX20_01494 at 1563.588 kb on + strand, within MPMX20_01494 at 1563.597 kb on + strand, within MPMX20_01494 at 1563.626 kb on - strand, within MPMX20_01494 at 1563.626 kb on - strand, within MPMX20_01494 at 1563.626 kb on - strand, within MPMX20_01494 at 1563.626 kb on - strand, within MPMX20_01494 at 1563.738 kb on + strand, within MPMX20_01494 at 1563.746 kb on - strand, within MPMX20_01494 at 1563.751 kb on + strand, within MPMX20_01494 at 1563.759 kb on - strand, within MPMX20_01494 at 1563.818 kb on + strand, within MPMX20_01494 at 1563.820 kb on + strand, within MPMX20_01494 at 1563.823 kb on + strand, within MPMX20_01494 at 1563.826 kb on - strand, within MPMX20_01494 at 1563.847 kb on + strand at 1564.003 kb on + strand at 1564.042 kb on + strand at 1564.048 kb on + strand at 1564.154 kb on - strand at 1564.189 kb on + strand at 1564.197 kb on - strand at 1564.197 kb on - strand at 1564.197 kb on - strand at 1564.230 kb on - strand at 1564.341 kb on + strand at 1564.341 kb on + strand at 1564.341 kb on + strand at 1564.400 kb on - strand, within MPMX20_01495 at 1564.400 kb on - strand, within MPMX20_01495 at 1564.438 kb on - strand, within MPMX20_01495 at 1564.464 kb on + strand, within MPMX20_01495 at 1564.466 kb on - strand, within MPMX20_01495 at 1564.471 kb on - strand, within MPMX20_01495 at 1564.475 kb on + strand, within MPMX20_01495 at 1564.475 kb on + strand, within MPMX20_01495 at 1564.483 kb on - strand, within MPMX20_01495 at 1564.483 kb on - strand, within MPMX20_01495 at 1564.483 kb on - strand, within MPMX20_01495 at 1564.483 kb on - strand, within MPMX20_01495 at 1564.483 kb on - strand, within MPMX20_01495 at 1564.483 kb on - strand, within MPMX20_01495 at 1564.483 kb on - strand, within MPMX20_01495 at 1564.586 kb on - strand, within MPMX20_01495 at 1564.633 kb on - strand, within MPMX20_01495 at 1564.684 kb on + strand, within MPMX20_01495 at 1564.684 kb on + strand, within MPMX20_01495
Per-strain Table
Position Strand Gene LocusTag Fraction oxalate (C) remove 1,562,420 + +0.9 1,562,556 + MPMX20_01493 0.13 -0.4 1,562,599 - MPMX20_01493 0.18 -0.4 1,562,642 - MPMX20_01493 0.23 -0.9 1,562,714 + MPMX20_01493 0.31 +1.2 1,562,777 - MPMX20_01493 0.38 -0.8 1,562,863 + MPMX20_01493 0.47 +1.2 1,562,886 - MPMX20_01493 0.50 +1.5 1,563,056 - MPMX20_01493 0.68 +0.2 1,563,074 + MPMX20_01493 0.70 +0.3 1,563,082 - MPMX20_01493 0.71 -2.4 1,563,296 - -0.3 1,563,420 + -0.4 1,563,430 + +1.0 1,563,507 - MPMX20_01494 0.22 -2.4 1,563,553 + MPMX20_01494 0.31 +0.1 1,563,561 - MPMX20_01494 0.33 -2.0 1,563,569 - MPMX20_01494 0.35 +0.7 1,563,574 - MPMX20_01494 0.36 -3.1 1,563,576 - MPMX20_01494 0.36 -2.0 1,563,581 - MPMX20_01494 0.37 -1.9 1,563,581 - MPMX20_01494 0.37 -1.0 1,563,588 + MPMX20_01494 0.39 -1.3 1,563,597 + MPMX20_01494 0.40 -0.0 1,563,626 - MPMX20_01494 0.47 -3.2 1,563,626 - MPMX20_01494 0.47 -1.8 1,563,626 - MPMX20_01494 0.47 -1.0 1,563,626 - MPMX20_01494 0.47 +0.8 1,563,738 + MPMX20_01494 0.70 -2.7 1,563,746 - MPMX20_01494 0.72 -2.0 1,563,751 + MPMX20_01494 0.73 -3.0 1,563,759 - MPMX20_01494 0.74 +0.7 1,563,818 + MPMX20_01494 0.87 -2.1 1,563,820 + MPMX20_01494 0.87 -1.9 1,563,823 + MPMX20_01494 0.88 -0.4 1,563,826 - MPMX20_01494 0.88 -1.7 1,563,847 + -2.6 1,564,003 + +0.5 1,564,042 + -1.2 1,564,048 + +1.5 1,564,154 - -1.5 1,564,189 + -0.4 1,564,197 - -2.4 1,564,197 - -0.5 1,564,197 - +2.0 1,564,230 - +0.8 1,564,341 + -3.0 1,564,341 + -3.2 1,564,341 + -2.4 1,564,400 - MPMX20_01495 0.15 -0.4 1,564,400 - MPMX20_01495 0.15 -0.5 1,564,438 - MPMX20_01495 0.19 -1.0 1,564,464 + MPMX20_01495 0.21 +1.5 1,564,466 - MPMX20_01495 0.21 -2.4 1,564,471 - MPMX20_01495 0.21 +3.2 1,564,475 + MPMX20_01495 0.22 -0.4 1,564,475 + MPMX20_01495 0.22 +0.5 1,564,483 - MPMX20_01495 0.23 +0.1 1,564,483 - MPMX20_01495 0.23 +0.5 1,564,483 - MPMX20_01495 0.23 +0.6 1,564,483 - MPMX20_01495 0.23 -3.8 1,564,483 - MPMX20_01495 0.23 -1.5 1,564,483 - MPMX20_01495 0.23 +0.0 1,564,483 - MPMX20_01495 0.23 -1.9 1,564,586 - MPMX20_01495 0.32 -1.4 1,564,633 - MPMX20_01495 0.36 -1.9 1,564,684 + MPMX20_01495 0.41 -2.8 1,564,684 + MPMX20_01495 0.41 -0.2
Or see this region's nucleotide sequence