Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01494

Experiment: oxalate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01493 and MPMX20_01494 are separated by 63 nucleotidesMPMX20_01494 and MPMX20_01495 are separated by 351 nucleotides MPMX20_01493: MPMX20_01493 - Ribosomal protein S6--L-glutamate ligase, at 1,562,438 to 1,563,340 _01493 MPMX20_01494: MPMX20_01494 - putative protein YbjN, at 1,563,404 to 1,563,880 _01494 MPMX20_01495: MPMX20_01495 - Putrescine-binding periplasmic protein, at 1,564,232 to 1,565,344 _01495 Position (kb) 1563 1564Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1562.420 kb on + strandat 1562.556 kb on + strand, within MPMX20_01493at 1562.599 kb on - strand, within MPMX20_01493at 1562.642 kb on - strand, within MPMX20_01493at 1562.714 kb on + strand, within MPMX20_01493at 1562.777 kb on - strand, within MPMX20_01493at 1562.863 kb on + strand, within MPMX20_01493at 1562.886 kb on - strand, within MPMX20_01493at 1563.056 kb on - strand, within MPMX20_01493at 1563.074 kb on + strand, within MPMX20_01493at 1563.082 kb on - strand, within MPMX20_01493at 1563.296 kb on - strandat 1563.420 kb on + strandat 1563.430 kb on + strandat 1563.507 kb on - strand, within MPMX20_01494at 1563.553 kb on + strand, within MPMX20_01494at 1563.561 kb on - strand, within MPMX20_01494at 1563.569 kb on - strand, within MPMX20_01494at 1563.574 kb on - strand, within MPMX20_01494at 1563.576 kb on - strand, within MPMX20_01494at 1563.581 kb on - strand, within MPMX20_01494at 1563.581 kb on - strand, within MPMX20_01494at 1563.588 kb on + strand, within MPMX20_01494at 1563.597 kb on + strand, within MPMX20_01494at 1563.626 kb on - strand, within MPMX20_01494at 1563.626 kb on - strand, within MPMX20_01494at 1563.626 kb on - strand, within MPMX20_01494at 1563.626 kb on - strand, within MPMX20_01494at 1563.738 kb on + strand, within MPMX20_01494at 1563.746 kb on - strand, within MPMX20_01494at 1563.751 kb on + strand, within MPMX20_01494at 1563.759 kb on - strand, within MPMX20_01494at 1563.818 kb on + strand, within MPMX20_01494at 1563.820 kb on + strand, within MPMX20_01494at 1563.823 kb on + strand, within MPMX20_01494at 1563.826 kb on - strand, within MPMX20_01494at 1563.847 kb on + strandat 1564.003 kb on + strandat 1564.042 kb on + strandat 1564.048 kb on + strandat 1564.154 kb on - strandat 1564.189 kb on + strandat 1564.197 kb on - strandat 1564.197 kb on - strandat 1564.197 kb on - strandat 1564.230 kb on - strandat 1564.341 kb on + strandat 1564.341 kb on + strandat 1564.341 kb on + strandat 1564.400 kb on - strand, within MPMX20_01495at 1564.400 kb on - strand, within MPMX20_01495at 1564.438 kb on - strand, within MPMX20_01495at 1564.464 kb on + strand, within MPMX20_01495at 1564.466 kb on - strand, within MPMX20_01495at 1564.471 kb on - strand, within MPMX20_01495at 1564.475 kb on + strand, within MPMX20_01495at 1564.475 kb on + strand, within MPMX20_01495at 1564.483 kb on - strand, within MPMX20_01495at 1564.483 kb on - strand, within MPMX20_01495at 1564.483 kb on - strand, within MPMX20_01495at 1564.483 kb on - strand, within MPMX20_01495at 1564.483 kb on - strand, within MPMX20_01495at 1564.483 kb on - strand, within MPMX20_01495at 1564.483 kb on - strand, within MPMX20_01495at 1564.586 kb on - strand, within MPMX20_01495at 1564.633 kb on - strand, within MPMX20_01495at 1564.684 kb on + strand, within MPMX20_01495at 1564.684 kb on + strand, within MPMX20_01495

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Per-strain Table

Position Strand Gene LocusTag Fraction oxalate (C)
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1,562,420 + +0.9
1,562,556 + MPMX20_01493 0.13 -0.4
1,562,599 - MPMX20_01493 0.18 -0.4
1,562,642 - MPMX20_01493 0.23 -0.9
1,562,714 + MPMX20_01493 0.31 +1.2
1,562,777 - MPMX20_01493 0.38 -0.8
1,562,863 + MPMX20_01493 0.47 +1.2
1,562,886 - MPMX20_01493 0.50 +1.5
1,563,056 - MPMX20_01493 0.68 +0.2
1,563,074 + MPMX20_01493 0.70 +0.3
1,563,082 - MPMX20_01493 0.71 -2.4
1,563,296 - -0.3
1,563,420 + -0.4
1,563,430 + +1.0
1,563,507 - MPMX20_01494 0.22 -2.4
1,563,553 + MPMX20_01494 0.31 +0.1
1,563,561 - MPMX20_01494 0.33 -2.0
1,563,569 - MPMX20_01494 0.35 +0.7
1,563,574 - MPMX20_01494 0.36 -3.1
1,563,576 - MPMX20_01494 0.36 -2.0
1,563,581 - MPMX20_01494 0.37 -1.9
1,563,581 - MPMX20_01494 0.37 -1.0
1,563,588 + MPMX20_01494 0.39 -1.3
1,563,597 + MPMX20_01494 0.40 -0.0
1,563,626 - MPMX20_01494 0.47 -3.2
1,563,626 - MPMX20_01494 0.47 -1.8
1,563,626 - MPMX20_01494 0.47 -1.0
1,563,626 - MPMX20_01494 0.47 +0.8
1,563,738 + MPMX20_01494 0.70 -2.7
1,563,746 - MPMX20_01494 0.72 -2.0
1,563,751 + MPMX20_01494 0.73 -3.0
1,563,759 - MPMX20_01494 0.74 +0.7
1,563,818 + MPMX20_01494 0.87 -2.1
1,563,820 + MPMX20_01494 0.87 -1.9
1,563,823 + MPMX20_01494 0.88 -0.4
1,563,826 - MPMX20_01494 0.88 -1.7
1,563,847 + -2.6
1,564,003 + +0.5
1,564,042 + -1.2
1,564,048 + +1.5
1,564,154 - -1.5
1,564,189 + -0.4
1,564,197 - -2.4
1,564,197 - -0.5
1,564,197 - +2.0
1,564,230 - +0.8
1,564,341 + -3.0
1,564,341 + -3.2
1,564,341 + -2.4
1,564,400 - MPMX20_01495 0.15 -0.4
1,564,400 - MPMX20_01495 0.15 -0.5
1,564,438 - MPMX20_01495 0.19 -1.0
1,564,464 + MPMX20_01495 0.21 +1.5
1,564,466 - MPMX20_01495 0.21 -2.4
1,564,471 - MPMX20_01495 0.21 +3.2
1,564,475 + MPMX20_01495 0.22 -0.4
1,564,475 + MPMX20_01495 0.22 +0.5
1,564,483 - MPMX20_01495 0.23 +0.1
1,564,483 - MPMX20_01495 0.23 +0.5
1,564,483 - MPMX20_01495 0.23 +0.6
1,564,483 - MPMX20_01495 0.23 -3.8
1,564,483 - MPMX20_01495 0.23 -1.5
1,564,483 - MPMX20_01495 0.23 +0.0
1,564,483 - MPMX20_01495 0.23 -1.9
1,564,586 - MPMX20_01495 0.32 -1.4
1,564,633 - MPMX20_01495 0.36 -1.9
1,564,684 + MPMX20_01495 0.41 -2.8
1,564,684 + MPMX20_01495 0.41 -0.2

Or see this region's nucleotide sequence