Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00896

Experiment: oxalate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00894 and MPMX20_00895 are separated by 74 nucleotidesMPMX20_00895 and MPMX20_00896 are separated by 52 nucleotidesMPMX20_00896 and MPMX20_00897 are separated by 68 nucleotidesMPMX20_00897 and MPMX20_00898 are separated by 32 nucleotides MPMX20_00894: MPMX20_00894 - hypothetical protein, at 942,801 to 943,625 _00894 MPMX20_00895: MPMX20_00895 - putative methyltransferase YcgJ, at 943,700 to 944,473 _00895 MPMX20_00896: MPMX20_00896 - Membrane-bound lytic murein transglycosylase D, at 944,526 to 945,890 _00896 MPMX20_00897: MPMX20_00897 - Hydroxyacylglutathione hydrolase GloB, at 945,959 to 946,717 _00897 MPMX20_00898: MPMX20_00898 - hypothetical protein, at 946,750 to 947,466 _00898 Position (kb) 944 945 946Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 943.549 kb on + strandat 943.607 kb on + strandat 943.647 kb on + strandat 943.649 kb on - strandat 943.712 kb on - strandat 943.718 kb on + strandat 943.726 kb on - strandat 943.726 kb on - strandat 943.753 kb on + strandat 943.758 kb on + strandat 943.763 kb on + strandat 943.765 kb on + strandat 943.773 kb on + strandat 943.778 kb on + strand, within MPMX20_00895at 943.781 kb on - strand, within MPMX20_00895at 943.799 kb on - strand, within MPMX20_00895at 943.827 kb on - strand, within MPMX20_00895at 943.850 kb on + strand, within MPMX20_00895at 943.914 kb on - strand, within MPMX20_00895at 943.914 kb on - strand, within MPMX20_00895at 943.952 kb on - strand, within MPMX20_00895at 943.991 kb on + strand, within MPMX20_00895at 943.996 kb on + strand, within MPMX20_00895at 943.999 kb on - strand, within MPMX20_00895at 944.009 kb on + strand, within MPMX20_00895at 944.070 kb on + strand, within MPMX20_00895at 944.072 kb on + strand, within MPMX20_00895at 944.107 kb on - strand, within MPMX20_00895at 944.195 kb on - strand, within MPMX20_00895at 944.246 kb on + strand, within MPMX20_00895at 944.269 kb on + strand, within MPMX20_00895at 944.332 kb on - strand, within MPMX20_00895at 944.345 kb on + strand, within MPMX20_00895at 944.377 kb on - strand, within MPMX20_00895at 944.377 kb on - strand, within MPMX20_00895at 944.411 kb on - strandat 944.665 kb on + strand, within MPMX20_00896at 944.711 kb on - strand, within MPMX20_00896at 944.719 kb on - strand, within MPMX20_00896at 944.731 kb on + strand, within MPMX20_00896at 944.733 kb on - strand, within MPMX20_00896at 944.759 kb on + strand, within MPMX20_00896at 944.759 kb on + strand, within MPMX20_00896at 944.759 kb on + strand, within MPMX20_00896at 944.767 kb on - strand, within MPMX20_00896at 944.767 kb on - strand, within MPMX20_00896at 944.767 kb on - strand, within MPMX20_00896at 944.774 kb on + strand, within MPMX20_00896at 944.782 kb on - strand, within MPMX20_00896at 944.782 kb on - strand, within MPMX20_00896at 944.852 kb on + strand, within MPMX20_00896at 944.860 kb on - strand, within MPMX20_00896at 944.945 kb on + strand, within MPMX20_00896at 944.948 kb on - strand, within MPMX20_00896at 944.954 kb on - strand, within MPMX20_00896at 944.966 kb on + strand, within MPMX20_00896at 944.966 kb on + strand, within MPMX20_00896at 944.974 kb on - strand, within MPMX20_00896at 944.976 kb on - strand, within MPMX20_00896at 944.991 kb on - strand, within MPMX20_00896at 944.996 kb on + strand, within MPMX20_00896at 945.004 kb on - strand, within MPMX20_00896at 945.122 kb on - strand, within MPMX20_00896at 945.122 kb on - strand, within MPMX20_00896at 945.124 kb on + strand, within MPMX20_00896at 945.127 kb on + strand, within MPMX20_00896at 945.134 kb on + strand, within MPMX20_00896at 945.134 kb on + strand, within MPMX20_00896at 945.135 kb on - strand, within MPMX20_00896at 945.140 kb on - strand, within MPMX20_00896at 945.285 kb on + strand, within MPMX20_00896at 945.286 kb on - strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.303 kb on - strand, within MPMX20_00896at 945.303 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.409 kb on - strand, within MPMX20_00896at 945.497 kb on + strand, within MPMX20_00896at 945.505 kb on - strand, within MPMX20_00896at 945.505 kb on - strand, within MPMX20_00896at 945.519 kb on + strand, within MPMX20_00896at 945.560 kb on - strand, within MPMX20_00896at 945.585 kb on - strand, within MPMX20_00896at 945.588 kb on - strand, within MPMX20_00896at 945.607 kb on - strand, within MPMX20_00896at 945.700 kb on - strand, within MPMX20_00896at 945.703 kb on + strand, within MPMX20_00896at 945.703 kb on + strand, within MPMX20_00896at 945.712 kb on + strand, within MPMX20_00896at 945.768 kb on - strandat 945.788 kb on - strandat 945.788 kb on - strandat 945.788 kb on - strandat 945.808 kb on - strandat 945.815 kb on + strandat 945.815 kb on + strandat 945.815 kb on + strandat 945.815 kb on + strandat 945.815 kb on + strandat 945.815 kb on + strandat 945.823 kb on - strandat 945.847 kb on + strandat 945.855 kb on - strandat 945.855 kb on - strandat 945.857 kb on + strandat 945.862 kb on + strandat 945.865 kb on - strandat 945.896 kb on + strandat 945.904 kb on - strandat 945.968 kb on + strandat 946.056 kb on - strand, within MPMX20_00897at 946.144 kb on - strand, within MPMX20_00897at 946.266 kb on - strand, within MPMX20_00897at 946.283 kb on + strand, within MPMX20_00897at 946.291 kb on - strand, within MPMX20_00897at 946.390 kb on + strand, within MPMX20_00897at 946.390 kb on + strand, within MPMX20_00897at 946.454 kb on - strand, within MPMX20_00897at 946.467 kb on + strand, within MPMX20_00897at 946.544 kb on - strand, within MPMX20_00897at 946.567 kb on + strand, within MPMX20_00897at 946.570 kb on - strand, within MPMX20_00897at 946.583 kb on - strand, within MPMX20_00897at 946.693 kb on - strandat 946.711 kb on + strandat 946.749 kb on + strandat 946.786 kb on + strandat 946.806 kb on + strandat 946.812 kb on + strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.833 kb on + strand, within MPMX20_00898at 946.837 kb on + strand, within MPMX20_00898at 946.884 kb on + strand, within MPMX20_00898

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction oxalate (C)
remove
943,549 + +0.0
943,607 + -0.2
943,647 + +0.3
943,649 - +2.9
943,712 - -0.5
943,718 + +0.6
943,726 - +0.6
943,726 - -0.9
943,753 + +1.8
943,758 + -3.6
943,763 + -3.3
943,765 + +1.1
943,773 + +0.9
943,778 + MPMX20_00895 0.10 -1.8
943,781 - MPMX20_00895 0.10 +1.2
943,799 - MPMX20_00895 0.13 +0.5
943,827 - MPMX20_00895 0.16 +1.5
943,850 + MPMX20_00895 0.19 +0.6
943,914 - MPMX20_00895 0.28 -3.3
943,914 - MPMX20_00895 0.28 -1.1
943,952 - MPMX20_00895 0.33 +1.5
943,991 + MPMX20_00895 0.38 +1.9
943,996 + MPMX20_00895 0.38 +1.0
943,999 - MPMX20_00895 0.39 -1.3
944,009 + MPMX20_00895 0.40 +1.6
944,070 + MPMX20_00895 0.48 -0.8
944,072 + MPMX20_00895 0.48 +2.9
944,107 - MPMX20_00895 0.53 +1.3
944,195 - MPMX20_00895 0.64 +0.2
944,246 + MPMX20_00895 0.71 -1.2
944,269 + MPMX20_00895 0.74 +0.4
944,332 - MPMX20_00895 0.82 +1.6
944,345 + MPMX20_00895 0.83 -0.2
944,377 - MPMX20_00895 0.87 +0.6
944,377 - MPMX20_00895 0.87 +0.9
944,411 - -1.2
944,665 + MPMX20_00896 0.10 +1.1
944,711 - MPMX20_00896 0.14 -1.2
944,719 - MPMX20_00896 0.14 -0.6
944,731 + MPMX20_00896 0.15 +1.8
944,733 - MPMX20_00896 0.15 +0.7
944,759 + MPMX20_00896 0.17 +0.2
944,759 + MPMX20_00896 0.17 +0.2
944,759 + MPMX20_00896 0.17 -0.9
944,767 - MPMX20_00896 0.18 +2.0
944,767 - MPMX20_00896 0.18 -2.6
944,767 - MPMX20_00896 0.18 +1.5
944,774 + MPMX20_00896 0.18 -1.9
944,782 - MPMX20_00896 0.19 +1.2
944,782 - MPMX20_00896 0.19 -2.9
944,852 + MPMX20_00896 0.24 +0.9
944,860 - MPMX20_00896 0.24 -2.4
944,945 + MPMX20_00896 0.31 -2.2
944,948 - MPMX20_00896 0.31 -1.5
944,954 - MPMX20_00896 0.31 -0.1
944,966 + MPMX20_00896 0.32 -0.2
944,966 + MPMX20_00896 0.32 +1.3
944,974 - MPMX20_00896 0.33 +1.5
944,976 - MPMX20_00896 0.33 +0.0
944,991 - MPMX20_00896 0.34 -0.9
944,996 + MPMX20_00896 0.34 +0.7
945,004 - MPMX20_00896 0.35 +0.6
945,122 - MPMX20_00896 0.44 -1.6
945,122 - MPMX20_00896 0.44 -0.4
945,124 + MPMX20_00896 0.44 -0.9
945,127 + MPMX20_00896 0.44 -3.4
945,134 + MPMX20_00896 0.45 -3.3
945,134 + MPMX20_00896 0.45 +1.8
945,135 - MPMX20_00896 0.45 +0.0
945,140 - MPMX20_00896 0.45 -0.4
945,285 + MPMX20_00896 0.56 -2.0
945,286 - MPMX20_00896 0.56 -2.0
945,297 + MPMX20_00896 0.56 -2.9
945,297 + MPMX20_00896 0.56 -2.0
945,297 + MPMX20_00896 0.56 -1.7
945,297 + MPMX20_00896 0.56 -1.5
945,297 + MPMX20_00896 0.56 -1.3
945,297 + MPMX20_00896 0.56 -1.8
945,297 + MPMX20_00896 0.56 +0.4
945,297 + MPMX20_00896 0.56 +1.8
945,297 + MPMX20_00896 0.56 -0.4
945,297 + MPMX20_00896 0.56 -0.8
945,297 + MPMX20_00896 0.56 +0.1
945,297 + MPMX20_00896 0.56 -3.2
945,303 - MPMX20_00896 0.57 +1.6
945,303 - MPMX20_00896 0.57 +1.7
945,305 - MPMX20_00896 0.57 -0.8
945,305 - MPMX20_00896 0.57 +0.2
945,305 - MPMX20_00896 0.57 -2.7
945,305 - MPMX20_00896 0.57 +0.7
945,305 - MPMX20_00896 0.57 -1.3
945,305 - MPMX20_00896 0.57 -1.9
945,305 - MPMX20_00896 0.57 -0.9
945,305 - MPMX20_00896 0.57 -2.8
945,305 - MPMX20_00896 0.57 -1.6
945,305 - MPMX20_00896 0.57 +0.2
945,305 - MPMX20_00896 0.57 +0.8
945,305 - MPMX20_00896 0.57 +1.7
945,305 - MPMX20_00896 0.57 +1.4
945,409 - MPMX20_00896 0.65 +1.0
945,497 + MPMX20_00896 0.71 -1.8
945,505 - MPMX20_00896 0.72 +0.7
945,505 - MPMX20_00896 0.72 -0.2
945,519 + MPMX20_00896 0.73 -2.4
945,560 - MPMX20_00896 0.76 -0.1
945,585 - MPMX20_00896 0.78 -0.1
945,588 - MPMX20_00896 0.78 -0.0
945,607 - MPMX20_00896 0.79 -2.7
945,700 - MPMX20_00896 0.86 +1.0
945,703 + MPMX20_00896 0.86 +5.0
945,703 + MPMX20_00896 0.86 -1.2
945,712 + MPMX20_00896 0.87 +0.9
945,768 - -0.9
945,788 - +1.6
945,788 - -1.9
945,788 - +1.0
945,808 - +1.0
945,815 + -2.0
945,815 + +1.0
945,815 + -0.8
945,815 + +0.1
945,815 + -2.1
945,815 + -2.0
945,823 - -1.2
945,847 + +1.2
945,855 - +0.7
945,855 - +1.3
945,857 + +1.4
945,862 + +1.0
945,865 - -0.3
945,896 + +0.3
945,904 - +0.1
945,968 + -1.7
946,056 - MPMX20_00897 0.13 -2.0
946,144 - MPMX20_00897 0.24 -0.4
946,266 - MPMX20_00897 0.40 -2.0
946,283 + MPMX20_00897 0.43 -1.8
946,291 - MPMX20_00897 0.44 -0.1
946,390 + MPMX20_00897 0.57 -1.1
946,390 + MPMX20_00897 0.57 +1.7
946,454 - MPMX20_00897 0.65 -3.2
946,467 + MPMX20_00897 0.67 -0.6
946,544 - MPMX20_00897 0.77 -0.0
946,567 + MPMX20_00897 0.80 -1.6
946,570 - MPMX20_00897 0.81 -1.7
946,583 - MPMX20_00897 0.82 -0.8
946,693 - -1.2
946,711 + +1.2
946,749 + -2.3
946,786 + +0.5
946,806 + +1.7
946,812 + +0.2
946,814 - +3.7
946,814 - +0.2
946,814 - +0.0
946,814 - +0.3
946,814 - +0.5
946,833 + MPMX20_00898 0.12 -1.8
946,837 + MPMX20_00898 0.12 +0.0
946,884 + MPMX20_00898 0.19 +0.3

Or see this region's nucleotide sequence