Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00654

Experiment: oxalate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00652 and MPMX20_00653 are separated by 148 nucleotidesMPMX20_00653 and MPMX20_00654 are separated by 84 nucleotidesMPMX20_00654 and MPMX20_00655 are separated by 41 nucleotidesMPMX20_00655 and MPMX20_00656 are separated by 67 nucleotides MPMX20_00652: MPMX20_00652 - Primosomal protein 1, at 677,894 to 678,439 _00652 MPMX20_00653: MPMX20_00653 - Organic hydroperoxide resistance protein OhrB, at 678,588 to 679,016 _00653 MPMX20_00654: MPMX20_00654 - Organic hydroperoxide resistance transcriptional regulator, at 679,101 to 679,553 _00654 MPMX20_00655: MPMX20_00655 - HTH-type transcriptional repressor NicS, at 679,595 to 680,236 _00655 MPMX20_00656: MPMX20_00656 - hypothetical protein, at 680,304 to 680,771 _00656 Position (kb) 679 680Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 678.444 kb on - strandat 678.444 kb on - strandat 678.444 kb on - strandat 678.450 kb on - strandat 678.460 kb on - strandat 678.482 kb on + strandat 678.482 kb on + strandat 678.514 kb on - strandat 678.522 kb on - strandat 678.574 kb on - strandat 678.656 kb on + strand, within MPMX20_00653at 678.757 kb on - strand, within MPMX20_00653at 678.847 kb on - strand, within MPMX20_00653at 678.856 kb on + strand, within MPMX20_00653at 678.861 kb on - strand, within MPMX20_00653at 678.866 kb on + strand, within MPMX20_00653at 678.871 kb on + strand, within MPMX20_00653at 678.871 kb on + strand, within MPMX20_00653at 678.874 kb on - strand, within MPMX20_00653at 678.874 kb on - strand, within MPMX20_00653at 678.874 kb on - strand, within MPMX20_00653at 678.879 kb on - strand, within MPMX20_00653at 678.928 kb on - strand, within MPMX20_00653at 679.049 kb on + strandat 679.091 kb on + strandat 679.093 kb on + strandat 679.101 kb on - strandat 679.129 kb on + strandat 679.150 kb on - strand, within MPMX20_00654at 679.165 kb on + strand, within MPMX20_00654at 679.165 kb on + strand, within MPMX20_00654at 679.165 kb on + strand, within MPMX20_00654at 679.171 kb on - strand, within MPMX20_00654at 679.173 kb on - strand, within MPMX20_00654at 679.173 kb on - strand, within MPMX20_00654at 679.244 kb on + strand, within MPMX20_00654at 679.244 kb on + strand, within MPMX20_00654at 679.250 kb on + strand, within MPMX20_00654at 679.252 kb on - strand, within MPMX20_00654at 679.252 kb on - strand, within MPMX20_00654at 679.320 kb on - strand, within MPMX20_00654at 679.373 kb on + strand, within MPMX20_00654at 679.381 kb on - strand, within MPMX20_00654at 679.381 kb on - strand, within MPMX20_00654at 679.393 kb on + strand, within MPMX20_00654at 679.459 kb on + strand, within MPMX20_00654at 679.459 kb on + strand, within MPMX20_00654at 679.459 kb on + strand, within MPMX20_00654at 679.459 kb on + strand, within MPMX20_00654at 679.488 kb on - strand, within MPMX20_00654at 679.503 kb on - strand, within MPMX20_00654at 679.605 kb on + strandat 679.605 kb on + strandat 679.605 kb on + strandat 679.613 kb on - strandat 679.613 kb on - strandat 679.613 kb on - strandat 679.613 kb on - strandat 679.654 kb on + strandat 679.654 kb on + strandat 679.662 kb on - strand, within MPMX20_00655at 679.695 kb on + strand, within MPMX20_00655at 679.696 kb on - strand, within MPMX20_00655at 679.741 kb on - strand, within MPMX20_00655at 679.824 kb on - strand, within MPMX20_00655at 679.837 kb on - strand, within MPMX20_00655at 679.844 kb on - strand, within MPMX20_00655at 679.856 kb on - strand, within MPMX20_00655at 679.903 kb on - strand, within MPMX20_00655at 679.930 kb on + strand, within MPMX20_00655at 679.938 kb on - strand, within MPMX20_00655at 679.938 kb on - strand, within MPMX20_00655at 679.951 kb on + strand, within MPMX20_00655at 679.955 kb on + strand, within MPMX20_00655at 679.973 kb on + strand, within MPMX20_00655at 679.977 kb on + strand, within MPMX20_00655at 679.996 kb on - strand, within MPMX20_00655at 680.079 kb on + strand, within MPMX20_00655at 680.130 kb on + strand, within MPMX20_00655at 680.132 kb on + strand, within MPMX20_00655at 680.155 kb on + strand, within MPMX20_00655at 680.161 kb on - strand, within MPMX20_00655at 680.222 kb on + strandat 680.226 kb on + strandat 680.226 kb on + strandat 680.226 kb on + strandat 680.230 kb on - strandat 680.230 kb on - strandat 680.234 kb on - strandat 680.234 kb on - strandat 680.239 kb on - strandat 680.261 kb on + strandat 680.270 kb on - strandat 680.290 kb on + strandat 680.310 kb on - strandat 680.310 kb on - strandat 680.317 kb on - strandat 680.330 kb on + strandat 680.338 kb on - strandat 680.349 kb on - strandat 680.351 kb on + strand, within MPMX20_00656at 680.359 kb on - strand, within MPMX20_00656at 680.430 kb on + strand, within MPMX20_00656at 680.479 kb on - strand, within MPMX20_00656at 680.498 kb on - strand, within MPMX20_00656at 680.511 kb on + strand, within MPMX20_00656at 680.511 kb on + strand, within MPMX20_00656

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Per-strain Table

Position Strand Gene LocusTag Fraction oxalate (C)
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678,444 - -0.6
678,444 - -1.3
678,444 - -3.5
678,450 - -4.0
678,460 - -1.1
678,482 + -0.1
678,482 + -1.4
678,514 - -0.8
678,522 - -2.4
678,574 - -1.1
678,656 + MPMX20_00653 0.16 -1.1
678,757 - MPMX20_00653 0.39 -0.5
678,847 - MPMX20_00653 0.60 +2.8
678,856 + MPMX20_00653 0.62 +0.4
678,861 - MPMX20_00653 0.64 -0.9
678,866 + MPMX20_00653 0.65 -3.1
678,871 + MPMX20_00653 0.66 +1.8
678,871 + MPMX20_00653 0.66 +0.7
678,874 - MPMX20_00653 0.67 +0.4
678,874 - MPMX20_00653 0.67 +1.3
678,874 - MPMX20_00653 0.67 +0.7
678,879 - MPMX20_00653 0.68 -0.2
678,928 - MPMX20_00653 0.79 -0.2
679,049 + -1.0
679,091 + +1.2
679,093 + +0.7
679,101 - -2.4
679,129 + +1.4
679,150 - MPMX20_00654 0.11 -1.7
679,165 + MPMX20_00654 0.14 +0.4
679,165 + MPMX20_00654 0.14 -4.3
679,165 + MPMX20_00654 0.14 -1.5
679,171 - MPMX20_00654 0.15 -2.0
679,173 - MPMX20_00654 0.16 -0.9
679,173 - MPMX20_00654 0.16 -1.6
679,244 + MPMX20_00654 0.32 -1.9
679,244 + MPMX20_00654 0.32 -0.1
679,250 + MPMX20_00654 0.33 -0.4
679,252 - MPMX20_00654 0.33 -1.6
679,252 - MPMX20_00654 0.33 -2.0
679,320 - MPMX20_00654 0.48 +0.3
679,373 + MPMX20_00654 0.60 -2.4
679,381 - MPMX20_00654 0.62 -0.2
679,381 - MPMX20_00654 0.62 -1.2
679,393 + MPMX20_00654 0.64 -0.9
679,459 + MPMX20_00654 0.79 +0.8
679,459 + MPMX20_00654 0.79 -0.7
679,459 + MPMX20_00654 0.79 -1.6
679,459 + MPMX20_00654 0.79 -1.8
679,488 - MPMX20_00654 0.85 +1.6
679,503 - MPMX20_00654 0.89 -0.1
679,605 + +0.3
679,605 + -1.6
679,605 + -1.5
679,613 - +0.9
679,613 - +0.6
679,613 - +1.7
679,613 - +0.1
679,654 + -2.7
679,654 + +1.2
679,662 - MPMX20_00655 0.10 -0.8
679,695 + MPMX20_00655 0.16 +0.2
679,696 - MPMX20_00655 0.16 +3.0
679,741 - MPMX20_00655 0.23 -2.7
679,824 - MPMX20_00655 0.36 -0.8
679,837 - MPMX20_00655 0.38 -0.9
679,844 - MPMX20_00655 0.39 -3.1
679,856 - MPMX20_00655 0.41 -0.8
679,903 - MPMX20_00655 0.48 -1.0
679,930 + MPMX20_00655 0.52 -3.4
679,938 - MPMX20_00655 0.53 +0.4
679,938 - MPMX20_00655 0.53 +0.4
679,951 + MPMX20_00655 0.55 +1.0
679,955 + MPMX20_00655 0.56 +1.9
679,973 + MPMX20_00655 0.59 -0.1
679,977 + MPMX20_00655 0.60 +0.1
679,996 - MPMX20_00655 0.62 -1.9
680,079 + MPMX20_00655 0.75 -0.3
680,130 + MPMX20_00655 0.83 +0.6
680,132 + MPMX20_00655 0.84 -0.1
680,155 + MPMX20_00655 0.87 +2.0
680,161 - MPMX20_00655 0.88 +0.8
680,222 + -0.1
680,226 + -2.0
680,226 + -2.6
680,226 + +1.6
680,230 - +1.0
680,230 - +0.3
680,234 - -1.0
680,234 - +0.8
680,239 - -0.7
680,261 + +0.4
680,270 - -2.8
680,290 + +2.1
680,310 - +0.4
680,310 - -0.6
680,317 - -1.4
680,330 + +0.8
680,338 - -0.1
680,349 - -2.1
680,351 + MPMX20_00656 0.10 +1.3
680,359 - MPMX20_00656 0.12 -1.1
680,430 + MPMX20_00656 0.27 +0.5
680,479 - MPMX20_00656 0.37 -0.5
680,498 - MPMX20_00656 0.41 -2.2
680,511 + MPMX20_00656 0.44 +0.6
680,511 + MPMX20_00656 0.44 +0.3

Or see this region's nucleotide sequence