Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04317 and MPMX20_04318 are separated by 3 nucleotides MPMX20_04318 and MPMX20_04319 are separated by 126 nucleotides
MPMX20_04317: MPMX20_04317 - Low-affinity gluconate transporter, at 4,511,501 to 4,512,841
_04317
MPMX20_04318: MPMX20_04318 - Thermoresistant gluconokinase, at 4,512,845 to 4,513,372
_04318
MPMX20_04319: MPMX20_04319 - HTH-type transcriptional regulator GntR, at 4,513,499 to 4,514,494
_04319
Position (kb)
4512
4513
4514 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4511.847 kb on + strand, within MPMX20_04317 at 4511.848 kb on - strand, within MPMX20_04317 at 4511.858 kb on + strand, within MPMX20_04317 at 4511.944 kb on + strand, within MPMX20_04317 at 4512.013 kb on + strand, within MPMX20_04317 at 4512.076 kb on + strand, within MPMX20_04317 at 4512.084 kb on - strand, within MPMX20_04317 at 4512.084 kb on - strand, within MPMX20_04317 at 4512.156 kb on - strand, within MPMX20_04317 at 4512.256 kb on - strand, within MPMX20_04317 at 4512.282 kb on - strand, within MPMX20_04317 at 4512.293 kb on - strand, within MPMX20_04317 at 4512.352 kb on + strand, within MPMX20_04317 at 4512.357 kb on + strand, within MPMX20_04317 at 4512.467 kb on - strand, within MPMX20_04317 at 4512.517 kb on - strand, within MPMX20_04317 at 4512.545 kb on + strand, within MPMX20_04317 at 4512.724 kb on - strand at 4512.750 kb on - strand at 4512.791 kb on - strand at 4512.807 kb on - strand at 4512.883 kb on - strand at 4512.947 kb on + strand, within MPMX20_04318 at 4512.954 kb on + strand, within MPMX20_04318 at 4512.974 kb on + strand, within MPMX20_04318 at 4513.014 kb on - strand, within MPMX20_04318 at 4513.016 kb on + strand, within MPMX20_04318 at 4513.024 kb on - strand, within MPMX20_04318 at 4513.024 kb on - strand, within MPMX20_04318 at 4513.082 kb on - strand, within MPMX20_04318 at 4513.158 kb on + strand, within MPMX20_04318 at 4513.296 kb on - strand, within MPMX20_04318 at 4513.306 kb on - strand, within MPMX20_04318 at 4513.316 kb on - strand, within MPMX20_04318 at 4513.316 kb on - strand, within MPMX20_04318 at 4513.375 kb on - strand at 4513.448 kb on + strand at 4513.448 kb on + strand at 4513.456 kb on - strand at 4513.475 kb on - strand at 4513.626 kb on - strand, within MPMX20_04319 at 4513.662 kb on - strand, within MPMX20_04319 at 4513.724 kb on + strand, within MPMX20_04319 at 4513.756 kb on - strand, within MPMX20_04319 at 4513.775 kb on - strand, within MPMX20_04319 at 4513.830 kb on + strand, within MPMX20_04319 at 4513.830 kb on + strand, within MPMX20_04319 at 4513.838 kb on - strand, within MPMX20_04319 at 4513.838 kb on - strand, within MPMX20_04319 at 4513.838 kb on - strand, within MPMX20_04319 at 4513.846 kb on + strand, within MPMX20_04319 at 4513.861 kb on + strand, within MPMX20_04319 at 4513.861 kb on + strand, within MPMX20_04319 at 4513.869 kb on - strand, within MPMX20_04319 at 4513.878 kb on + strand, within MPMX20_04319 at 4513.901 kb on - strand, within MPMX20_04319 at 4513.922 kb on + strand, within MPMX20_04319 at 4514.048 kb on - strand, within MPMX20_04319 at 4514.052 kb on + strand, within MPMX20_04319 at 4514.070 kb on - strand, within MPMX20_04319 at 4514.110 kb on - strand, within MPMX20_04319 at 4514.118 kb on + strand, within MPMX20_04319 at 4514.126 kb on - strand, within MPMX20_04319 at 4514.126 kb on - strand, within MPMX20_04319 at 4514.139 kb on + strand, within MPMX20_04319 at 4514.147 kb on - strand, within MPMX20_04319 at 4514.187 kb on + strand, within MPMX20_04319 at 4514.197 kb on + strand, within MPMX20_04319 at 4514.202 kb on + strand, within MPMX20_04319 at 4514.235 kb on - strand, within MPMX20_04319 at 4514.280 kb on + strand, within MPMX20_04319 at 4514.281 kb on - strand, within MPMX20_04319 at 4514.324 kb on + strand, within MPMX20_04319
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 4,511,847 + MPMX20_04317 0.26 +1.2 4,511,848 - MPMX20_04317 0.26 +0.3 4,511,858 + MPMX20_04317 0.27 +0.6 4,511,944 + MPMX20_04317 0.33 -1.3 4,512,013 + MPMX20_04317 0.38 +0.6 4,512,076 + MPMX20_04317 0.43 +0.2 4,512,084 - MPMX20_04317 0.43 -0.6 4,512,084 - MPMX20_04317 0.43 +0.3 4,512,156 - MPMX20_04317 0.49 -0.3 4,512,256 - MPMX20_04317 0.56 +0.4 4,512,282 - MPMX20_04317 0.58 -0.5 4,512,293 - MPMX20_04317 0.59 -0.1 4,512,352 + MPMX20_04317 0.63 +1.8 4,512,357 + MPMX20_04317 0.64 -1.8 4,512,467 - MPMX20_04317 0.72 +0.4 4,512,517 - MPMX20_04317 0.76 -0.7 4,512,545 + MPMX20_04317 0.78 +2.1 4,512,724 - +0.2 4,512,750 - -0.2 4,512,791 - +0.1 4,512,807 - +0.4 4,512,883 - -0.7 4,512,947 + MPMX20_04318 0.19 +0.7 4,512,954 + MPMX20_04318 0.21 +2.7 4,512,974 + MPMX20_04318 0.24 -0.2 4,513,014 - MPMX20_04318 0.32 -1.0 4,513,016 + MPMX20_04318 0.32 +0.6 4,513,024 - MPMX20_04318 0.34 +0.0 4,513,024 - MPMX20_04318 0.34 -1.9 4,513,082 - MPMX20_04318 0.45 +0.2 4,513,158 + MPMX20_04318 0.59 +0.8 4,513,296 - MPMX20_04318 0.85 -0.3 4,513,306 - MPMX20_04318 0.87 -0.7 4,513,316 - MPMX20_04318 0.89 +1.2 4,513,316 - MPMX20_04318 0.89 -0.4 4,513,375 - -0.2 4,513,448 + -0.2 4,513,448 + -0.4 4,513,456 - -1.3 4,513,475 - -0.3 4,513,626 - MPMX20_04319 0.13 -0.2 4,513,662 - MPMX20_04319 0.16 -0.9 4,513,724 + MPMX20_04319 0.23 +0.5 4,513,756 - MPMX20_04319 0.26 -0.6 4,513,775 - MPMX20_04319 0.28 -0.8 4,513,830 + MPMX20_04319 0.33 -2.0 4,513,830 + MPMX20_04319 0.33 -2.8 4,513,838 - MPMX20_04319 0.34 -0.7 4,513,838 - MPMX20_04319 0.34 -1.3 4,513,838 - MPMX20_04319 0.34 -0.3 4,513,846 + MPMX20_04319 0.35 +0.1 4,513,861 + MPMX20_04319 0.36 +0.5 4,513,861 + MPMX20_04319 0.36 -1.2 4,513,869 - MPMX20_04319 0.37 -0.8 4,513,878 + MPMX20_04319 0.38 -1.5 4,513,901 - MPMX20_04319 0.40 -0.6 4,513,922 + MPMX20_04319 0.42 -1.1 4,514,048 - MPMX20_04319 0.55 -1.0 4,514,052 + MPMX20_04319 0.56 -1.5 4,514,070 - MPMX20_04319 0.57 +0.4 4,514,110 - MPMX20_04319 0.61 +0.4 4,514,118 + MPMX20_04319 0.62 +0.3 4,514,126 - MPMX20_04319 0.63 +0.2 4,514,126 - MPMX20_04319 0.63 -0.9 4,514,139 + MPMX20_04319 0.64 -0.6 4,514,147 - MPMX20_04319 0.65 -1.4 4,514,187 + MPMX20_04319 0.69 -0.6 4,514,197 + MPMX20_04319 0.70 -2.1 4,514,202 + MPMX20_04319 0.71 -0.0 4,514,235 - MPMX20_04319 0.74 -1.2 4,514,280 + MPMX20_04319 0.78 +1.3 4,514,281 - MPMX20_04319 0.79 -0.3 4,514,324 + MPMX20_04319 0.83 -0.5
Or see this region's nucleotide sequence