Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02531 and MPMX20_02532 are separated by 177 nucleotides MPMX20_02532 and MPMX20_02533 are separated by 254 nucleotides MPMX20_02533 and MPMX20_02534 are separated by 130 nucleotides MPMX20_02534 and MPMX20_02535 are separated by 38 nucleotides
MPMX20_02531: MPMX20_02531 - hypothetical protein, at 2,671,573 to 2,671,749
_02531
MPMX20_02532: MPMX20_02532 - hypothetical protein, at 2,671,927 to 2,672,460
_02532
MPMX20_02533: MPMX20_02533 - cAMP-activated global transcriptional regulator CRP, at 2,672,715 to 2,673,380
_02533
MPMX20_02534: MPMX20_02534 - hypothetical protein, at 2,673,511 to 2,673,645
_02534
MPMX20_02535: MPMX20_02535 - Pyrimidine-specific ribonucleoside hydrolase RihB, at 2,673,684 to 2,674,649
_02535
Position (kb)
2672
2673
2674 Strain fitness (log2 ratio)
-2
-1
0
1 at 2671.719 kb on + strand, within MPMX20_02531 at 2671.719 kb on + strand, within MPMX20_02531 at 2671.719 kb on + strand, within MPMX20_02531 at 2671.719 kb on + strand, within MPMX20_02531 at 2671.719 kb on + strand, within MPMX20_02531 at 2671.719 kb on + strand, within MPMX20_02531 at 2671.719 kb on + strand, within MPMX20_02531 at 2671.719 kb on + strand, within MPMX20_02531 at 2671.746 kb on + strand at 2671.761 kb on + strand at 2671.962 kb on - strand at 2673.781 kb on + strand, within MPMX20_02535 at 2673.805 kb on - strand, within MPMX20_02535 at 2674.315 kb on - strand, within MPMX20_02535
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 2,671,719 + MPMX20_02531 0.82 -2.7 2,671,719 + MPMX20_02531 0.82 +0.7 2,671,719 + MPMX20_02531 0.82 -0.3 2,671,719 + MPMX20_02531 0.82 -0.0 2,671,719 + MPMX20_02531 0.82 -1.3 2,671,719 + MPMX20_02531 0.82 -0.6 2,671,719 + MPMX20_02531 0.82 -2.2 2,671,719 + MPMX20_02531 0.82 -2.6 2,671,746 + -1.3 2,671,761 + -1.6 2,671,962 - -2.5 2,673,781 + MPMX20_02535 0.10 -1.7 2,673,805 - MPMX20_02535 0.13 -0.3 2,674,315 - MPMX20_02535 0.65 -1.3
Or see this region's nucleotide sequence