Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00888 and MPMX20_00889 are separated by 66 nucleotides MPMX20_00889 and MPMX20_00890 are separated by 58 nucleotides MPMX20_00890 and MPMX20_00891 are separated by 162 nucleotides MPMX20_00891 and MPMX20_00892 are separated by 31 nucleotides
MPMX20_00888: MPMX20_00888 - 23S ribosomal RNA, at 936,291 to 939,193
_00888
MPMX20_00889: MPMX20_00889 - 5S ribosomal RNA, at 939,260 to 939,370
_00889
MPMX20_00890: MPMX20_00890 - tRNA-Asp, at 939,429 to 939,505
_00890
MPMX20_00891: MPMX20_00891 - 2,5-diketo-D-gluconic acid reductase B, at 939,668 to 940,471
_00891
MPMX20_00892: MPMX20_00892 - HTH-type transcriptional regulator DmlR, at 940,503 to 941,408
_00892
Position (kb) 939
940
941 Strain fitness (log2 ratio) -2
-1
0
1
2 at 939.516 kb on + strand at 939.608 kb on + strand at 939.675 kb on + strand at 939.686 kb on + strand at 939.739 kb on - strand at 939.820 kb on + strand, within MPMX20_00891 at 939.820 kb on - strand, within MPMX20_00891 at 939.888 kb on + strand, within MPMX20_00891 at 939.936 kb on + strand, within MPMX20_00891 at 939.941 kb on + strand, within MPMX20_00891 at 939.960 kb on + strand, within MPMX20_00891 at 939.986 kb on + strand, within MPMX20_00891 at 939.995 kb on - strand, within MPMX20_00891 at 940.028 kb on + strand, within MPMX20_00891 at 940.030 kb on - strand, within MPMX20_00891 at 940.030 kb on - strand, within MPMX20_00891 at 940.030 kb on - strand, within MPMX20_00891 at 940.157 kb on + strand, within MPMX20_00891 at 940.157 kb on + strand, within MPMX20_00891 at 940.157 kb on + strand, within MPMX20_00891 at 940.158 kb on - strand, within MPMX20_00891 at 940.165 kb on - strand, within MPMX20_00891 at 940.165 kb on - strand, within MPMX20_00891 at 940.165 kb on - strand, within MPMX20_00891 at 940.165 kb on - strand, within MPMX20_00891 at 940.165 kb on - strand, within MPMX20_00891 at 940.167 kb on + strand, within MPMX20_00891 at 940.175 kb on - strand, within MPMX20_00891 at 940.226 kb on - strand, within MPMX20_00891 at 940.311 kb on - strand, within MPMX20_00891 at 940.317 kb on - strand, within MPMX20_00891 at 940.337 kb on - strand, within MPMX20_00891 at 940.360 kb on + strand, within MPMX20_00891 at 940.382 kb on - strand, within MPMX20_00891 at 940.420 kb on - strand at 940.435 kb on + strand at 940.438 kb on - strand at 940.448 kb on - strand at 940.448 kb on - strand at 940.500 kb on + strand at 940.500 kb on + strand at 940.582 kb on - strand at 940.598 kb on - strand, within MPMX20_00892 at 940.622 kb on - strand, within MPMX20_00892 at 940.686 kb on - strand, within MPMX20_00892 at 940.725 kb on - strand, within MPMX20_00892 at 940.725 kb on - strand, within MPMX20_00892 at 940.746 kb on + strand, within MPMX20_00892 at 940.760 kb on - strand, within MPMX20_00892 at 940.801 kb on + strand, within MPMX20_00892 at 940.809 kb on - strand, within MPMX20_00892 at 940.809 kb on - strand, within MPMX20_00892 at 940.833 kb on + strand, within MPMX20_00892 at 940.841 kb on - strand, within MPMX20_00892 at 940.845 kb on - strand, within MPMX20_00892 at 940.883 kb on + strand, within MPMX20_00892 at 940.893 kb on + strand, within MPMX20_00892 at 941.045 kb on + strand, within MPMX20_00892 at 941.068 kb on + strand, within MPMX20_00892 at 941.076 kb on - strand, within MPMX20_00892 at 941.149 kb on - strand, within MPMX20_00892 at 941.264 kb on + strand, within MPMX20_00892 at 941.408 kb on + strand at 941.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 939,516 + +0.4 939,608 + -0.7 939,675 + -0.5 939,686 + +0.3 939,739 - +0.6 939,820 + MPMX20_00891 0.19 +1.3 939,820 - MPMX20_00891 0.19 -0.5 939,888 + MPMX20_00891 0.27 +1.8 939,936 + MPMX20_00891 0.33 +0.1 939,941 + MPMX20_00891 0.34 -1.6 939,960 + MPMX20_00891 0.36 +0.1 939,986 + MPMX20_00891 0.40 -0.9 939,995 - MPMX20_00891 0.41 +0.1 940,028 + MPMX20_00891 0.45 -0.2 940,030 - MPMX20_00891 0.45 -0.3 940,030 - MPMX20_00891 0.45 +0.6 940,030 - MPMX20_00891 0.45 +1.7 940,157 + MPMX20_00891 0.61 -0.3 940,157 + MPMX20_00891 0.61 +0.4 940,157 + MPMX20_00891 0.61 +0.1 940,158 - MPMX20_00891 0.61 -0.0 940,165 - MPMX20_00891 0.62 +0.0 940,165 - MPMX20_00891 0.62 +1.8 940,165 - MPMX20_00891 0.62 -0.2 940,165 - MPMX20_00891 0.62 +0.3 940,165 - MPMX20_00891 0.62 -0.9 940,167 + MPMX20_00891 0.62 +1.0 940,175 - MPMX20_00891 0.63 -0.4 940,226 - MPMX20_00891 0.69 +0.9 940,311 - MPMX20_00891 0.80 +0.2 940,317 - MPMX20_00891 0.81 +1.1 940,337 - MPMX20_00891 0.83 -0.7 940,360 + MPMX20_00891 0.86 -2.0 940,382 - MPMX20_00891 0.89 -0.1 940,420 - +0.5 940,435 + +0.1 940,438 - +0.5 940,448 - +2.6 940,448 - -0.7 940,500 + -0.2 940,500 + -0.5 940,582 - +1.5 940,598 - MPMX20_00892 0.10 +1.0 940,622 - MPMX20_00892 0.13 -1.0 940,686 - MPMX20_00892 0.20 +0.0 940,725 - MPMX20_00892 0.25 -1.2 940,725 - MPMX20_00892 0.25 +1.0 940,746 + MPMX20_00892 0.27 +0.2 940,760 - MPMX20_00892 0.28 +1.3 940,801 + MPMX20_00892 0.33 +1.8 940,809 - MPMX20_00892 0.34 -0.6 940,809 - MPMX20_00892 0.34 +1.2 940,833 + MPMX20_00892 0.36 +1.4 940,841 - MPMX20_00892 0.37 +0.7 940,845 - MPMX20_00892 0.38 -0.5 940,883 + MPMX20_00892 0.42 +0.3 940,893 + MPMX20_00892 0.43 +0.5 941,045 + MPMX20_00892 0.60 -0.3 941,068 + MPMX20_00892 0.62 +0.3 941,076 - MPMX20_00892 0.63 +0.6 941,149 - MPMX20_00892 0.71 -0.4 941,264 + MPMX20_00892 0.84 +1.0 941,408 + -0.9 941,467 + -1.0
Or see this region's nucleotide sequence