Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00818

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00817 and MPMX20_00818 are separated by 96 nucleotidesMPMX20_00818 and MPMX20_00819 are separated by 195 nucleotidesMPMX20_00819 and MPMX20_00820 are separated by 101 nucleotides MPMX20_00817: MPMX20_00817 - Blue copper oxidase CueO, at 858,758 to 860,356 _00817 MPMX20_00818: MPMX20_00818 - Quinoprotein glucose dehydrogenase, at 860,453 to 862,843 _00818 MPMX20_00819: MPMX20_00819 - Hypoxanthine phosphoribosyltransferase, at 863,039 to 863,587 _00819 MPMX20_00820: MPMX20_00820 - Carbonic anhydrase 2, at 863,689 to 864,351 _00820 Position (kb) 860 861 862 863Strain fitness (log2 ratio) -2 -1 0 1 2at 859.483 kb on - strand, within MPMX20_00817at 859.491 kb on + strand, within MPMX20_00817at 859.499 kb on - strand, within MPMX20_00817at 859.499 kb on - strand, within MPMX20_00817at 859.504 kb on - strand, within MPMX20_00817at 859.509 kb on - strand, within MPMX20_00817at 859.611 kb on - strand, within MPMX20_00817at 859.635 kb on + strand, within MPMX20_00817at 859.643 kb on - strand, within MPMX20_00817at 859.670 kb on + strand, within MPMX20_00817at 859.681 kb on + strand, within MPMX20_00817at 859.830 kb on + strand, within MPMX20_00817at 859.871 kb on + strand, within MPMX20_00817at 859.944 kb on - strand, within MPMX20_00817at 860.179 kb on + strand, within MPMX20_00817at 860.228 kb on + strandat 860.234 kb on - strandat 860.234 kb on - strandat 860.234 kb on - strandat 860.281 kb on - strandat 860.304 kb on + strandat 860.331 kb on - strandat 860.335 kb on + strandat 860.344 kb on - strandat 860.351 kb on + strandat 860.380 kb on + strandat 860.385 kb on + strandat 860.388 kb on - strandat 860.395 kb on - strandat 860.475 kb on + strandat 860.495 kb on - strandat 860.542 kb on - strandat 860.560 kb on + strandat 860.596 kb on + strandat 860.765 kb on + strand, within MPMX20_00818at 860.765 kb on + strand, within MPMX20_00818at 860.773 kb on - strand, within MPMX20_00818at 860.773 kb on - strand, within MPMX20_00818at 860.836 kb on - strand, within MPMX20_00818at 860.837 kb on - strand, within MPMX20_00818at 860.895 kb on + strand, within MPMX20_00818at 860.895 kb on + strand, within MPMX20_00818at 860.925 kb on - strand, within MPMX20_00818at 860.929 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.960 kb on - strand, within MPMX20_00818at 860.960 kb on - strand, within MPMX20_00818at 860.965 kb on + strand, within MPMX20_00818at 860.973 kb on - strand, within MPMX20_00818at 860.974 kb on + strand, within MPMX20_00818at 860.983 kb on - strand, within MPMX20_00818at 860.985 kb on + strand, within MPMX20_00818at 861.042 kb on + strand, within MPMX20_00818at 861.044 kb on + strand, within MPMX20_00818at 861.110 kb on - strand, within MPMX20_00818at 861.112 kb on + strand, within MPMX20_00818at 861.120 kb on - strand, within MPMX20_00818at 861.195 kb on + strand, within MPMX20_00818at 861.203 kb on - strand, within MPMX20_00818at 861.236 kb on + strand, within MPMX20_00818at 861.249 kb on - strand, within MPMX20_00818at 861.249 kb on - strand, within MPMX20_00818at 861.330 kb on + strand, within MPMX20_00818at 861.383 kb on - strand, within MPMX20_00818at 861.458 kb on + strand, within MPMX20_00818at 861.485 kb on - strand, within MPMX20_00818at 861.487 kb on + strand, within MPMX20_00818at 861.525 kb on + strand, within MPMX20_00818at 861.543 kb on + strand, within MPMX20_00818at 861.543 kb on + strand, within MPMX20_00818at 861.551 kb on - strand, within MPMX20_00818at 861.630 kb on + strand, within MPMX20_00818at 861.630 kb on + strand, within MPMX20_00818at 861.630 kb on + strand, within MPMX20_00818at 861.652 kb on + strand, within MPMX20_00818at 861.719 kb on - strand, within MPMX20_00818at 861.719 kb on - strand, within MPMX20_00818at 861.721 kb on + strand, within MPMX20_00818at 861.731 kb on + strand, within MPMX20_00818at 861.762 kb on - strand, within MPMX20_00818at 861.779 kb on + strand, within MPMX20_00818at 861.829 kb on + strand, within MPMX20_00818at 861.912 kb on + strand, within MPMX20_00818at 862.000 kb on + strand, within MPMX20_00818at 862.085 kb on - strand, within MPMX20_00818at 862.108 kb on + strand, within MPMX20_00818at 862.257 kb on + strand, within MPMX20_00818at 862.265 kb on - strand, within MPMX20_00818at 862.275 kb on - strand, within MPMX20_00818at 862.281 kb on + strand, within MPMX20_00818at 862.299 kb on - strand, within MPMX20_00818at 862.310 kb on - strand, within MPMX20_00818at 862.328 kb on + strand, within MPMX20_00818at 862.343 kb on + strand, within MPMX20_00818at 862.346 kb on - strand, within MPMX20_00818at 862.391 kb on - strand, within MPMX20_00818at 862.472 kb on - strand, within MPMX20_00818at 862.584 kb on - strand, within MPMX20_00818at 862.621 kb on - strandat 862.621 kb on - strandat 862.621 kb on - strandat 862.628 kb on + strandat 862.628 kb on + strandat 862.636 kb on - strandat 862.636 kb on - strandat 862.636 kb on - strandat 862.638 kb on + strandat 862.638 kb on + strandat 862.673 kb on + strandat 862.693 kb on + strandat 862.713 kb on + strandat 862.787 kb on + strandat 862.795 kb on + strandat 862.808 kb on + strandat 862.857 kb on - strandat 862.945 kb on + strandat 862.947 kb on - strandat 862.947 kb on - strandat 862.950 kb on + strandat 862.953 kb on - strandat 862.958 kb on - strandat 862.973 kb on + strandat 862.997 kb on + strandat 863.005 kb on - strandat 863.196 kb on + strand, within MPMX20_00819at 863.196 kb on + strand, within MPMX20_00819at 863.201 kb on + strand, within MPMX20_00819at 863.204 kb on - strand, within MPMX20_00819at 863.204 kb on - strand, within MPMX20_00819at 863.204 kb on - strand, within MPMX20_00819at 863.216 kb on + strand, within MPMX20_00819at 863.219 kb on + strand, within MPMX20_00819at 863.224 kb on - strand, within MPMX20_00819at 863.260 kb on + strand, within MPMX20_00819at 863.374 kb on + strand, within MPMX20_00819at 863.432 kb on - strand, within MPMX20_00819at 863.445 kb on - strand, within MPMX20_00819at 863.488 kb on + strand, within MPMX20_00819at 863.565 kb on + strandat 863.565 kb on + strandat 863.588 kb on + strandat 863.588 kb on + strandat 863.620 kb on - strandat 863.620 kb on - strandat 863.670 kb on - strandat 863.699 kb on - strandat 863.735 kb on + strandat 863.775 kb on + strand, within MPMX20_00820at 863.775 kb on + strand, within MPMX20_00820at 863.815 kb on - strand, within MPMX20_00820at 863.824 kb on + strand, within MPMX20_00820at 863.826 kb on - strand, within MPMX20_00820

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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859,483 - MPMX20_00817 0.45 -0.4
859,491 + MPMX20_00817 0.46 -0.7
859,499 - MPMX20_00817 0.46 +0.0
859,499 - MPMX20_00817 0.46 -1.0
859,504 - MPMX20_00817 0.47 -0.5
859,509 - MPMX20_00817 0.47 +0.7
859,611 - MPMX20_00817 0.53 +0.2
859,635 + MPMX20_00817 0.55 +0.8
859,643 - MPMX20_00817 0.55 -0.4
859,670 + MPMX20_00817 0.57 +0.7
859,681 + MPMX20_00817 0.58 +0.3
859,830 + MPMX20_00817 0.67 -1.8
859,871 + MPMX20_00817 0.70 -0.0
859,944 - MPMX20_00817 0.74 -1.2
860,179 + MPMX20_00817 0.89 -0.2
860,228 + -1.1
860,234 - +0.5
860,234 - +0.4
860,234 - +0.8
860,281 - -1.0
860,304 + -0.2
860,331 - -0.7
860,335 + -0.5
860,344 - +0.4
860,351 + -1.1
860,380 + +0.1
860,385 + +0.1
860,388 - -0.9
860,395 - -1.2
860,475 + -0.2
860,495 - -0.0
860,542 - -0.2
860,560 + +0.5
860,596 + +0.8
860,765 + MPMX20_00818 0.13 +1.3
860,765 + MPMX20_00818 0.13 -2.5
860,773 - MPMX20_00818 0.13 +0.1
860,773 - MPMX20_00818 0.13 -2.4
860,836 - MPMX20_00818 0.16 -0.5
860,837 - MPMX20_00818 0.16 +0.4
860,895 + MPMX20_00818 0.18 +1.0
860,895 + MPMX20_00818 0.18 -0.0
860,925 - MPMX20_00818 0.20 +0.3
860,929 + MPMX20_00818 0.20 -0.3
860,952 + MPMX20_00818 0.21 +0.0
860,952 + MPMX20_00818 0.21 -1.0
860,952 + MPMX20_00818 0.21 -0.7
860,952 + MPMX20_00818 0.21 +0.0
860,952 + MPMX20_00818 0.21 -1.3
860,952 + MPMX20_00818 0.21 +0.6
860,952 + MPMX20_00818 0.21 +0.2
860,960 - MPMX20_00818 0.21 -0.4
860,960 - MPMX20_00818 0.21 -1.5
860,965 + MPMX20_00818 0.21 -0.4
860,973 - MPMX20_00818 0.22 +0.4
860,974 + MPMX20_00818 0.22 +0.9
860,983 - MPMX20_00818 0.22 +0.5
860,985 + MPMX20_00818 0.22 +0.5
861,042 + MPMX20_00818 0.25 -0.4
861,044 + MPMX20_00818 0.25 -0.3
861,110 - MPMX20_00818 0.27 +0.7
861,112 + MPMX20_00818 0.28 -0.9
861,120 - MPMX20_00818 0.28 -1.3
861,195 + MPMX20_00818 0.31 +0.3
861,203 - MPMX20_00818 0.31 +1.1
861,236 + MPMX20_00818 0.33 -0.7
861,249 - MPMX20_00818 0.33 +0.0
861,249 - MPMX20_00818 0.33 -0.9
861,330 + MPMX20_00818 0.37 -0.0
861,383 - MPMX20_00818 0.39 -0.9
861,458 + MPMX20_00818 0.42 +0.5
861,485 - MPMX20_00818 0.43 -0.2
861,487 + MPMX20_00818 0.43 -0.3
861,525 + MPMX20_00818 0.45 +0.7
861,543 + MPMX20_00818 0.46 -0.0
861,543 + MPMX20_00818 0.46 +1.0
861,551 - MPMX20_00818 0.46 +0.8
861,630 + MPMX20_00818 0.49 -1.2
861,630 + MPMX20_00818 0.49 -0.1
861,630 + MPMX20_00818 0.49 -0.7
861,652 + MPMX20_00818 0.50 +1.2
861,719 - MPMX20_00818 0.53 -1.0
861,719 - MPMX20_00818 0.53 +0.5
861,721 + MPMX20_00818 0.53 +0.5
861,731 + MPMX20_00818 0.53 -0.2
861,762 - MPMX20_00818 0.55 +0.8
861,779 + MPMX20_00818 0.55 +0.5
861,829 + MPMX20_00818 0.58 +0.1
861,912 + MPMX20_00818 0.61 +0.1
862,000 + MPMX20_00818 0.65 +0.0
862,085 - MPMX20_00818 0.68 -0.8
862,108 + MPMX20_00818 0.69 +0.6
862,257 + MPMX20_00818 0.75 +0.2
862,265 - MPMX20_00818 0.76 +0.1
862,275 - MPMX20_00818 0.76 -0.1
862,281 + MPMX20_00818 0.76 -0.6
862,299 - MPMX20_00818 0.77 -0.2
862,310 - MPMX20_00818 0.78 +0.9
862,328 + MPMX20_00818 0.78 -0.2
862,343 + MPMX20_00818 0.79 +2.0
862,346 - MPMX20_00818 0.79 -0.1
862,391 - MPMX20_00818 0.81 +0.8
862,472 - MPMX20_00818 0.84 -0.2
862,584 - MPMX20_00818 0.89 -0.9
862,621 - -0.5
862,621 - +0.2
862,621 - +0.3
862,628 + -1.3
862,628 + -0.7
862,636 - -0.4
862,636 - +0.0
862,636 - -0.3
862,638 + -2.2
862,638 + -0.7
862,673 + -0.5
862,693 + +0.3
862,713 + -1.6
862,787 + +0.2
862,795 + -0.3
862,808 + +0.1
862,857 - -0.2
862,945 + -1.6
862,947 - -0.8
862,947 - -0.6
862,950 + +0.3
862,953 - -1.4
862,958 - +1.3
862,973 + +2.2
862,997 + -0.0
863,005 - -0.2
863,196 + MPMX20_00819 0.29 +0.8
863,196 + MPMX20_00819 0.29 +0.0
863,201 + MPMX20_00819 0.30 +0.3
863,204 - MPMX20_00819 0.30 -1.6
863,204 - MPMX20_00819 0.30 -0.9
863,204 - MPMX20_00819 0.30 -0.8
863,216 + MPMX20_00819 0.32 +1.3
863,219 + MPMX20_00819 0.33 +1.5
863,224 - MPMX20_00819 0.34 -1.6
863,260 + MPMX20_00819 0.40 +0.5
863,374 + MPMX20_00819 0.61 -0.7
863,432 - MPMX20_00819 0.72 -1.0
863,445 - MPMX20_00819 0.74 -1.8
863,488 + MPMX20_00819 0.82 +1.8
863,565 + +0.2
863,565 + -2.0
863,588 + +0.1
863,588 + +0.2
863,620 - -1.1
863,620 - +1.3
863,670 - -0.0
863,699 - +0.4
863,735 + +1.4
863,775 + MPMX20_00820 0.13 -0.0
863,775 + MPMX20_00820 0.13 -1.0
863,815 - MPMX20_00820 0.19 -0.2
863,824 + MPMX20_00820 0.20 -0.0
863,826 - MPMX20_00820 0.21 -1.0

Or see this region's nucleotide sequence