Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00177

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00175 and MPMX20_00176 are separated by 245 nucleotidesMPMX20_00176 and MPMX20_00177 are separated by 58 nucleotidesMPMX20_00177 and MPMX20_00178 are separated by 26 nucleotides MPMX20_00175: MPMX20_00175 - hypothetical protein, at 182,677 to 183,387 _00175 MPMX20_00176: MPMX20_00176 - Cold shock protein CspA, at 183,633 to 183,845 _00176 MPMX20_00177: MPMX20_00177 - Glyoxylate/hydroxypyruvate reductase B, at 183,904 to 184,878 _00177 MPMX20_00178: MPMX20_00178 - Putative tartrate transporter, at 184,905 to 186,185 _00178 Position (kb) 183 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 182.921 kb on - strand, within MPMX20_00175at 182.935 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.966 kb on - strand, within MPMX20_00175at 182.982 kb on + strand, within MPMX20_00175at 182.990 kb on - strand, within MPMX20_00175at 182.990 kb on - strand, within MPMX20_00175at 182.991 kb on - strand, within MPMX20_00175at 183.012 kb on - strand, within MPMX20_00175at 183.015 kb on + strand, within MPMX20_00175at 183.015 kb on + strand, within MPMX20_00175at 183.015 kb on + strand, within MPMX20_00175at 183.023 kb on - strand, within MPMX20_00175at 183.054 kb on - strand, within MPMX20_00175at 183.116 kb on - strand, within MPMX20_00175at 183.130 kb on + strand, within MPMX20_00175at 183.138 kb on - strand, within MPMX20_00175at 183.177 kb on + strand, within MPMX20_00175at 183.216 kb on + strand, within MPMX20_00175at 183.225 kb on - strand, within MPMX20_00175at 183.230 kb on + strand, within MPMX20_00175at 183.238 kb on - strand, within MPMX20_00175at 183.268 kb on + strand, within MPMX20_00175at 183.276 kb on + strand, within MPMX20_00175at 183.293 kb on + strand, within MPMX20_00175at 183.329 kb on + strandat 183.337 kb on + strandat 183.337 kb on + strandat 183.344 kb on + strandat 183.344 kb on - strandat 183.354 kb on + strandat 183.362 kb on - strandat 183.465 kb on - strandat 183.492 kb on + strandat 183.492 kb on + strandat 183.493 kb on + strandat 183.501 kb on - strandat 183.501 kb on - strandat 183.516 kb on + strandat 183.602 kb on - strandat 183.705 kb on - strand, within MPMX20_00176at 183.712 kb on + strand, within MPMX20_00176at 183.731 kb on + strand, within MPMX20_00176at 183.731 kb on + strand, within MPMX20_00176at 183.731 kb on + strand, within MPMX20_00176at 183.739 kb on - strand, within MPMX20_00176at 183.749 kb on - strand, within MPMX20_00176at 183.846 kb on + strandat 183.921 kb on + strandat 183.929 kb on - strandat 183.935 kb on + strandat 184.103 kb on - strand, within MPMX20_00177at 184.109 kb on + strand, within MPMX20_00177at 184.115 kb on + strand, within MPMX20_00177at 184.131 kb on - strand, within MPMX20_00177at 184.158 kb on + strand, within MPMX20_00177at 184.265 kb on - strand, within MPMX20_00177at 184.282 kb on + strand, within MPMX20_00177at 184.289 kb on + strand, within MPMX20_00177at 184.395 kb on + strand, within MPMX20_00177at 184.403 kb on - strand, within MPMX20_00177at 184.403 kb on - strand, within MPMX20_00177at 184.409 kb on - strand, within MPMX20_00177at 184.435 kb on - strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.466 kb on - strand, within MPMX20_00177at 184.466 kb on - strand, within MPMX20_00177at 184.574 kb on + strand, within MPMX20_00177at 184.620 kb on + strand, within MPMX20_00177at 184.620 kb on + strand, within MPMX20_00177at 184.628 kb on - strand, within MPMX20_00177at 184.628 kb on - strand, within MPMX20_00177at 184.662 kb on + strand, within MPMX20_00177at 184.729 kb on - strand, within MPMX20_00177at 184.755 kb on + strand, within MPMX20_00177at 184.808 kb on - strandat 184.850 kb on + strandat 184.872 kb on + strandat 184.913 kb on + strandat 184.974 kb on - strandat 184.985 kb on + strandat 185.032 kb on - strandat 185.080 kb on + strand, within MPMX20_00178at 185.086 kb on + strand, within MPMX20_00178at 185.094 kb on - strand, within MPMX20_00178at 185.094 kb on - strand, within MPMX20_00178at 185.094 kb on - strand, within MPMX20_00178at 185.125 kb on - strand, within MPMX20_00178at 185.198 kb on + strand, within MPMX20_00178at 185.208 kb on - strand, within MPMX20_00178at 185.250 kb on + strand, within MPMX20_00178at 185.258 kb on - strand, within MPMX20_00178at 185.360 kb on - strand, within MPMX20_00178at 185.414 kb on + strand, within MPMX20_00178at 185.440 kb on - strand, within MPMX20_00178at 185.447 kb on + strand, within MPMX20_00178at 185.481 kb on - strand, within MPMX20_00178at 185.522 kb on - strand, within MPMX20_00178at 185.553 kb on - strand, within MPMX20_00178at 185.579 kb on - strand, within MPMX20_00178at 185.603 kb on + strand, within MPMX20_00178at 185.608 kb on + strand, within MPMX20_00178at 185.616 kb on - strand, within MPMX20_00178at 185.635 kb on - strand, within MPMX20_00178at 185.646 kb on + strand, within MPMX20_00178at 185.649 kb on - strand, within MPMX20_00178at 185.668 kb on + strand, within MPMX20_00178at 185.699 kb on + strand, within MPMX20_00178at 185.707 kb on - strand, within MPMX20_00178at 185.730 kb on - strand, within MPMX20_00178at 185.737 kb on + strand, within MPMX20_00178at 185.751 kb on - strand, within MPMX20_00178at 185.764 kb on + strand, within MPMX20_00178at 185.836 kb on + strand, within MPMX20_00178

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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182,921 - MPMX20_00175 0.34 +0.8
182,935 + MPMX20_00175 0.36 -0.9
182,947 + MPMX20_00175 0.38 -0.8
182,947 + MPMX20_00175 0.38 -1.0
182,947 + MPMX20_00175 0.38 -0.4
182,947 + MPMX20_00175 0.38 -0.0
182,947 + MPMX20_00175 0.38 +0.9
182,947 + MPMX20_00175 0.38 -0.6
182,947 + MPMX20_00175 0.38 -0.3
182,955 - MPMX20_00175 0.39 +1.1
182,955 - MPMX20_00175 0.39 +0.6
182,955 - MPMX20_00175 0.39 -0.6
182,955 - MPMX20_00175 0.39 +0.7
182,955 - MPMX20_00175 0.39 +4.6
182,955 - MPMX20_00175 0.39 -0.9
182,955 - MPMX20_00175 0.39 -2.6
182,966 - MPMX20_00175 0.41 -0.7
182,982 + MPMX20_00175 0.43 -1.5
182,990 - MPMX20_00175 0.44 +0.5
182,990 - MPMX20_00175 0.44 +1.4
182,991 - MPMX20_00175 0.44 -0.4
183,012 - MPMX20_00175 0.47 +0.0
183,015 + MPMX20_00175 0.48 -1.6
183,015 + MPMX20_00175 0.48 -1.0
183,015 + MPMX20_00175 0.48 -0.9
183,023 - MPMX20_00175 0.49 +0.8
183,054 - MPMX20_00175 0.53 -0.6
183,116 - MPMX20_00175 0.62 +0.3
183,130 + MPMX20_00175 0.64 +0.3
183,138 - MPMX20_00175 0.65 -0.6
183,177 + MPMX20_00175 0.70 -1.9
183,216 + MPMX20_00175 0.76 -0.9
183,225 - MPMX20_00175 0.77 +0.4
183,230 + MPMX20_00175 0.78 +0.8
183,238 - MPMX20_00175 0.79 -0.3
183,268 + MPMX20_00175 0.83 -0.6
183,276 + MPMX20_00175 0.84 -1.2
183,293 + MPMX20_00175 0.87 -0.5
183,329 + +0.1
183,337 + -0.4
183,337 + -0.2
183,344 + -0.1
183,344 - -0.3
183,354 + -0.4
183,362 - +2.4
183,465 - +0.5
183,492 + +0.3
183,492 + -0.8
183,493 + -0.3
183,501 - +0.1
183,501 - +1.8
183,516 + +0.1
183,602 - +0.7
183,705 - MPMX20_00176 0.34 +0.4
183,712 + MPMX20_00176 0.37 +0.4
183,731 + MPMX20_00176 0.46 +0.4
183,731 + MPMX20_00176 0.46 -1.0
183,731 + MPMX20_00176 0.46 +2.8
183,739 - MPMX20_00176 0.50 -0.2
183,749 - MPMX20_00176 0.54 +1.1
183,846 + +0.4
183,921 + +0.3
183,929 - -2.8
183,935 + +0.7
184,103 - MPMX20_00177 0.20 -0.9
184,109 + MPMX20_00177 0.21 +0.7
184,115 + MPMX20_00177 0.22 +0.7
184,131 - MPMX20_00177 0.23 +0.4
184,158 + MPMX20_00177 0.26 -1.6
184,265 - MPMX20_00177 0.37 -0.2
184,282 + MPMX20_00177 0.39 -0.3
184,289 + MPMX20_00177 0.39 +0.8
184,395 + MPMX20_00177 0.50 +0.5
184,403 - MPMX20_00177 0.51 +1.4
184,403 - MPMX20_00177 0.51 +0.2
184,409 - MPMX20_00177 0.52 +0.7
184,435 - MPMX20_00177 0.54 -0.2
184,458 + MPMX20_00177 0.57 -0.0
184,458 + MPMX20_00177 0.57 -0.6
184,458 + MPMX20_00177 0.57 -1.5
184,458 + MPMX20_00177 0.57 -0.5
184,458 + MPMX20_00177 0.57 -1.5
184,466 - MPMX20_00177 0.58 +0.3
184,466 - MPMX20_00177 0.58 +1.2
184,574 + MPMX20_00177 0.69 -1.8
184,620 + MPMX20_00177 0.73 -0.3
184,620 + MPMX20_00177 0.73 +0.7
184,628 - MPMX20_00177 0.74 +0.4
184,628 - MPMX20_00177 0.74 -0.9
184,662 + MPMX20_00177 0.78 -0.1
184,729 - MPMX20_00177 0.85 -1.1
184,755 + MPMX20_00177 0.87 -2.5
184,808 - +0.5
184,850 + -0.2
184,872 + -1.1
184,913 + -0.3
184,974 - -0.1
184,985 + +0.9
185,032 - -0.3
185,080 + MPMX20_00178 0.14 -0.9
185,086 + MPMX20_00178 0.14 +0.1
185,094 - MPMX20_00178 0.15 +0.2
185,094 - MPMX20_00178 0.15 -1.3
185,094 - MPMX20_00178 0.15 +0.0
185,125 - MPMX20_00178 0.17 +0.4
185,198 + MPMX20_00178 0.23 -0.1
185,208 - MPMX20_00178 0.24 -0.1
185,250 + MPMX20_00178 0.27 -0.4
185,258 - MPMX20_00178 0.28 -2.6
185,360 - MPMX20_00178 0.36 +0.6
185,414 + MPMX20_00178 0.40 +0.2
185,440 - MPMX20_00178 0.42 +0.3
185,447 + MPMX20_00178 0.42 +0.8
185,481 - MPMX20_00178 0.45 -0.2
185,522 - MPMX20_00178 0.48 -0.9
185,553 - MPMX20_00178 0.51 -0.2
185,579 - MPMX20_00178 0.53 +1.2
185,603 + MPMX20_00178 0.54 +0.2
185,608 + MPMX20_00178 0.55 +0.1
185,616 - MPMX20_00178 0.56 +0.1
185,635 - MPMX20_00178 0.57 +0.0
185,646 + MPMX20_00178 0.58 -0.7
185,649 - MPMX20_00178 0.58 -1.0
185,668 + MPMX20_00178 0.60 -0.4
185,699 + MPMX20_00178 0.62 -0.2
185,707 - MPMX20_00178 0.63 -1.0
185,730 - MPMX20_00178 0.64 -0.3
185,737 + MPMX20_00178 0.65 -2.1
185,751 - MPMX20_00178 0.66 +0.1
185,764 + MPMX20_00178 0.67 +0.5
185,836 + MPMX20_00178 0.73 +0.0

Or see this region's nucleotide sequence