Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04525 and MPMX20_04526 are separated by 128 nucleotides MPMX20_04526 and MPMX20_04527 are separated by 12 nucleotides MPMX20_04527 and MPMX20_04528 are separated by 49 nucleotides
MPMX20_04525: MPMX20_04525 - HTH-type transcriptional activator RhaR, at 4,735,625 to 4,736,389
_04525
MPMX20_04526: MPMX20_04526 - Fructose-6-phosphate aldolase 2, at 4,736,518 to 4,737,180
_04526
MPMX20_04527: MPMX20_04527 - Glycerol dehydrogenase, at 4,737,193 to 4,738,296
_04527
MPMX20_04528: MPMX20_04528 - Catalase-peroxidase, at 4,738,346 to 4,740,526
_04528
Position (kb)
4737
4738
4739 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4736.223 kb on - strand, within MPMX20_04525 at 4736.234 kb on - strand, within MPMX20_04525 at 4736.477 kb on + strand at 4736.477 kb on + strand at 4736.480 kb on - strand at 4736.594 kb on + strand, within MPMX20_04526 at 4736.594 kb on + strand, within MPMX20_04526 at 4736.623 kb on + strand, within MPMX20_04526 at 4736.631 kb on + strand, within MPMX20_04526 at 4736.640 kb on - strand, within MPMX20_04526 at 4736.710 kb on + strand, within MPMX20_04526 at 4736.710 kb on + strand, within MPMX20_04526 at 4736.718 kb on - strand, within MPMX20_04526 at 4736.718 kb on - strand, within MPMX20_04526 at 4736.748 kb on + strand, within MPMX20_04526 at 4736.792 kb on + strand, within MPMX20_04526 at 4736.792 kb on + strand, within MPMX20_04526 at 4736.793 kb on - strand, within MPMX20_04526 at 4736.800 kb on - strand, within MPMX20_04526 at 4736.842 kb on - strand, within MPMX20_04526 at 4736.853 kb on - strand, within MPMX20_04526 at 4736.860 kb on + strand, within MPMX20_04526 at 4736.860 kb on + strand, within MPMX20_04526 at 4736.868 kb on - strand, within MPMX20_04526 at 4736.989 kb on + strand, within MPMX20_04526 at 4737.042 kb on - strand, within MPMX20_04526 at 4737.132 kb on - strand at 4737.134 kb on + strand at 4737.135 kb on + strand at 4737.168 kb on + strand at 4737.175 kb on + strand at 4737.176 kb on - strand at 4737.176 kb on - strand at 4737.190 kb on + strand at 4737.196 kb on - strand at 4737.198 kb on - strand at 4737.198 kb on - strand at 4737.198 kb on - strand at 4737.198 kb on - strand at 4737.198 kb on - strand at 4737.198 kb on - strand at 4737.229 kb on - strand at 4737.241 kb on + strand at 4737.249 kb on - strand at 4737.325 kb on - strand, within MPMX20_04527 at 4737.445 kb on - strand, within MPMX20_04527 at 4737.454 kb on - strand, within MPMX20_04527 at 4737.454 kb on - strand, within MPMX20_04527 at 4737.486 kb on - strand, within MPMX20_04527 at 4737.540 kb on - strand, within MPMX20_04527 at 4737.601 kb on - strand, within MPMX20_04527 at 4737.787 kb on + strand, within MPMX20_04527 at 4737.795 kb on - strand, within MPMX20_04527 at 4737.795 kb on - strand, within MPMX20_04527 at 4737.799 kb on + strand, within MPMX20_04527 at 4737.831 kb on + strand, within MPMX20_04527 at 4737.839 kb on - strand, within MPMX20_04527 at 4737.906 kb on - strand, within MPMX20_04527 at 4737.940 kb on - strand, within MPMX20_04527 at 4738.077 kb on + strand, within MPMX20_04527 at 4738.089 kb on + strand, within MPMX20_04527 at 4738.097 kb on + strand, within MPMX20_04527 at 4738.097 kb on + strand, within MPMX20_04527 at 4738.105 kb on - strand, within MPMX20_04527 at 4738.131 kb on - strand, within MPMX20_04527 at 4738.196 kb on - strand at 4738.196 kb on - strand at 4738.225 kb on - strand at 4738.233 kb on + strand at 4738.241 kb on - strand at 4738.256 kb on - strand at 4738.256 kb on - strand at 4738.256 kb on - strand at 4738.275 kb on - strand at 4738.362 kb on - strand at 4738.433 kb on + strand at 4738.448 kb on - strand at 4738.575 kb on + strand, within MPMX20_04528 at 4738.583 kb on - strand, within MPMX20_04528 at 4738.583 kb on - strand, within MPMX20_04528 at 4738.583 kb on - strand, within MPMX20_04528 at 4738.674 kb on - strand, within MPMX20_04528 at 4738.789 kb on - strand, within MPMX20_04528 at 4738.816 kb on + strand, within MPMX20_04528 at 4738.843 kb on - strand, within MPMX20_04528 at 4738.852 kb on + strand, within MPMX20_04528 at 4738.860 kb on - strand, within MPMX20_04528 at 4738.860 kb on - strand, within MPMX20_04528 at 4738.912 kb on + strand, within MPMX20_04528 at 4738.912 kb on + strand, within MPMX20_04528 at 4739.000 kb on + strand, within MPMX20_04528 at 4739.008 kb on - strand, within MPMX20_04528 at 4739.008 kb on - strand, within MPMX20_04528 at 4739.033 kb on + strand, within MPMX20_04528 at 4739.041 kb on - strand, within MPMX20_04528 at 4739.141 kb on - strand, within MPMX20_04528 at 4739.143 kb on + strand, within MPMX20_04528 at 4739.165 kb on - strand, within MPMX20_04528 at 4739.193 kb on + strand, within MPMX20_04528 at 4739.203 kb on - strand, within MPMX20_04528 at 4739.236 kb on - strand, within MPMX20_04528 at 4739.294 kb on - strand, within MPMX20_04528
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 4,736,223 - MPMX20_04525 0.78 +1.3 4,736,234 - MPMX20_04525 0.80 -0.0 4,736,477 + -0.6 4,736,477 + +0.2 4,736,480 - -1.1 4,736,594 + MPMX20_04526 0.11 +0.2 4,736,594 + MPMX20_04526 0.11 -0.0 4,736,623 + MPMX20_04526 0.16 -1.7 4,736,631 + MPMX20_04526 0.17 +0.2 4,736,640 - MPMX20_04526 0.18 -0.3 4,736,710 + MPMX20_04526 0.29 +0.8 4,736,710 + MPMX20_04526 0.29 -0.3 4,736,718 - MPMX20_04526 0.30 -0.9 4,736,718 - MPMX20_04526 0.30 +0.0 4,736,748 + MPMX20_04526 0.35 +0.7 4,736,792 + MPMX20_04526 0.41 -2.8 4,736,792 + MPMX20_04526 0.41 -0.5 4,736,793 - MPMX20_04526 0.41 -1.5 4,736,800 - MPMX20_04526 0.43 +0.8 4,736,842 - MPMX20_04526 0.49 +0.3 4,736,853 - MPMX20_04526 0.51 -0.5 4,736,860 + MPMX20_04526 0.52 +1.3 4,736,860 + MPMX20_04526 0.52 +1.7 4,736,868 - MPMX20_04526 0.53 -1.2 4,736,989 + MPMX20_04526 0.71 +0.9 4,737,042 - MPMX20_04526 0.79 -1.2 4,737,132 - +1.3 4,737,134 + +0.8 4,737,135 + +0.7 4,737,168 + +1.1 4,737,175 + +1.3 4,737,176 - +0.7 4,737,176 - -0.3 4,737,190 + -2.3 4,737,196 - -0.6 4,737,198 - -1.8 4,737,198 - -0.4 4,737,198 - -1.4 4,737,198 - -0.5 4,737,198 - +0.8 4,737,198 - +0.2 4,737,229 - +1.7 4,737,241 + -1.0 4,737,249 - +0.2 4,737,325 - MPMX20_04527 0.12 +0.1 4,737,445 - MPMX20_04527 0.23 +2.2 4,737,454 - MPMX20_04527 0.24 -0.1 4,737,454 - MPMX20_04527 0.24 -0.2 4,737,486 - MPMX20_04527 0.27 +0.5 4,737,540 - MPMX20_04527 0.31 -1.2 4,737,601 - MPMX20_04527 0.37 +2.4 4,737,787 + MPMX20_04527 0.54 +1.4 4,737,795 - MPMX20_04527 0.55 +2.6 4,737,795 - MPMX20_04527 0.55 +0.8 4,737,799 + MPMX20_04527 0.55 -2.3 4,737,831 + MPMX20_04527 0.58 +0.3 4,737,839 - MPMX20_04527 0.59 +0.3 4,737,906 - MPMX20_04527 0.65 -0.7 4,737,940 - MPMX20_04527 0.68 +1.1 4,738,077 + MPMX20_04527 0.80 +1.5 4,738,089 + MPMX20_04527 0.81 +0.4 4,738,097 + MPMX20_04527 0.82 +0.1 4,738,097 + MPMX20_04527 0.82 +0.1 4,738,105 - MPMX20_04527 0.83 +0.7 4,738,131 - MPMX20_04527 0.85 +1.3 4,738,196 - +0.7 4,738,196 - +0.2 4,738,225 - +0.2 4,738,233 + +1.5 4,738,241 - +0.1 4,738,256 - -0.0 4,738,256 - -0.1 4,738,256 - +0.3 4,738,275 - -1.6 4,738,362 - +0.8 4,738,433 + +1.0 4,738,448 - -0.0 4,738,575 + MPMX20_04528 0.10 +0.3 4,738,583 - MPMX20_04528 0.11 +0.7 4,738,583 - MPMX20_04528 0.11 -0.9 4,738,583 - MPMX20_04528 0.11 +0.1 4,738,674 - MPMX20_04528 0.15 -0.3 4,738,789 - MPMX20_04528 0.20 -2.1 4,738,816 + MPMX20_04528 0.22 -1.7 4,738,843 - MPMX20_04528 0.23 -2.4 4,738,852 + MPMX20_04528 0.23 -0.9 4,738,860 - MPMX20_04528 0.24 +0.3 4,738,860 - MPMX20_04528 0.24 +0.1 4,738,912 + MPMX20_04528 0.26 +0.0 4,738,912 + MPMX20_04528 0.26 +0.2 4,739,000 + MPMX20_04528 0.30 +2.9 4,739,008 - MPMX20_04528 0.30 +0.6 4,739,008 - MPMX20_04528 0.30 -0.8 4,739,033 + MPMX20_04528 0.31 +0.5 4,739,041 - MPMX20_04528 0.32 +1.3 4,739,141 - MPMX20_04528 0.36 -0.3 4,739,143 + MPMX20_04528 0.37 -1.1 4,739,165 - MPMX20_04528 0.38 +0.0 4,739,193 + MPMX20_04528 0.39 +0.1 4,739,203 - MPMX20_04528 0.39 +0.2 4,739,236 - MPMX20_04528 0.41 +2.9 4,739,294 - MPMX20_04528 0.43 +0.1
Or see this region's nucleotide sequence