Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01658

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01656 and MPMX20_01657 overlap by 4 nucleotidesMPMX20_01657 and MPMX20_01658 overlap by 21 nucleotidesMPMX20_01658 and MPMX20_01659 are separated by 102 nucleotides MPMX20_01656: MPMX20_01656 - Uric acid degradation bifunctional protein, at 1,755,694 to 1,756,194 _01656 MPMX20_01657: MPMX20_01657 - 5-hydroxyisourate hydrolase, at 1,756,191 to 1,756,514 _01657 MPMX20_01658: MPMX20_01658 - Guanine deaminase, at 1,756,494 to 1,757,810 _01658 MPMX20_01659: MPMX20_01659 - putative allantoin permease, at 1,757,913 to 1,759,409 _01659 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1755.546 kb on + strandat 1755.554 kb on - strandat 1755.554 kb on - strandat 1755.554 kb on - strandat 1755.554 kb on - strandat 1755.646 kb on + strandat 1755.651 kb on + strandat 1755.698 kb on - strandat 1755.736 kb on - strandat 1755.736 kb on - strandat 1755.756 kb on - strand, within MPMX20_01656at 1755.821 kb on - strand, within MPMX20_01656at 1755.823 kb on - strand, within MPMX20_01656at 1755.823 kb on - strand, within MPMX20_01656at 1755.825 kb on + strand, within MPMX20_01656at 1756.017 kb on + strand, within MPMX20_01656at 1756.042 kb on + strand, within MPMX20_01656at 1756.125 kb on + strand, within MPMX20_01656at 1756.170 kb on + strandat 1756.182 kb on - strandat 1756.253 kb on + strand, within MPMX20_01657at 1756.254 kb on - strand, within MPMX20_01657at 1756.261 kb on - strand, within MPMX20_01657at 1756.286 kb on - strand, within MPMX20_01657at 1756.298 kb on - strand, within MPMX20_01657at 1756.302 kb on + strand, within MPMX20_01657at 1756.329 kb on - strand, within MPMX20_01657at 1756.375 kb on - strand, within MPMX20_01657at 1756.402 kb on + strand, within MPMX20_01657at 1756.404 kb on + strand, within MPMX20_01657at 1756.411 kb on - strand, within MPMX20_01657at 1756.412 kb on - strand, within MPMX20_01657at 1756.419 kb on - strand, within MPMX20_01657at 1756.492 kb on + strandat 1756.497 kb on + strandat 1756.505 kb on - strandat 1756.510 kb on - strandat 1756.518 kb on + strandat 1756.586 kb on - strandat 1756.706 kb on + strand, within MPMX20_01658at 1756.706 kb on + strand, within MPMX20_01658at 1756.706 kb on + strand, within MPMX20_01658at 1756.714 kb on - strand, within MPMX20_01658at 1756.714 kb on - strand, within MPMX20_01658at 1756.714 kb on - strand, within MPMX20_01658at 1756.771 kb on - strand, within MPMX20_01658at 1756.806 kb on + strand, within MPMX20_01658at 1756.807 kb on - strand, within MPMX20_01658at 1756.854 kb on + strand, within MPMX20_01658at 1756.863 kb on + strand, within MPMX20_01658at 1756.863 kb on + strand, within MPMX20_01658at 1756.871 kb on - strand, within MPMX20_01658at 1756.871 kb on - strand, within MPMX20_01658at 1756.871 kb on - strand, within MPMX20_01658at 1756.917 kb on + strand, within MPMX20_01658at 1757.010 kb on + strand, within MPMX20_01658at 1757.050 kb on - strand, within MPMX20_01658at 1757.063 kb on - strand, within MPMX20_01658at 1757.189 kb on + strand, within MPMX20_01658at 1757.222 kb on - strand, within MPMX20_01658at 1757.251 kb on - strand, within MPMX20_01658at 1757.299 kb on + strand, within MPMX20_01658at 1757.302 kb on - strand, within MPMX20_01658at 1757.321 kb on - strand, within MPMX20_01658at 1757.367 kb on - strand, within MPMX20_01658at 1757.393 kb on + strand, within MPMX20_01658at 1757.425 kb on + strand, within MPMX20_01658at 1757.600 kb on - strand, within MPMX20_01658at 1757.626 kb on - strand, within MPMX20_01658at 1757.675 kb on - strand, within MPMX20_01658at 1757.714 kb on + strandat 1757.714 kb on + strandat 1757.722 kb on - strandat 1757.722 kb on - strandat 1757.744 kb on + strandat 1757.744 kb on + strandat 1757.752 kb on - strandat 1757.752 kb on - strandat 1757.752 kb on - strandat 1757.755 kb on + strandat 1757.821 kb on + strandat 1757.912 kb on - strandat 1757.918 kb on - strandat 1758.003 kb on + strandat 1758.064 kb on - strand, within MPMX20_01659at 1758.064 kb on - strand, within MPMX20_01659at 1758.082 kb on - strand, within MPMX20_01659at 1758.082 kb on - strand, within MPMX20_01659at 1758.228 kb on - strand, within MPMX20_01659at 1758.275 kb on + strand, within MPMX20_01659at 1758.277 kb on - strand, within MPMX20_01659at 1758.311 kb on + strand, within MPMX20_01659at 1758.311 kb on + strand, within MPMX20_01659at 1758.311 kb on - strand, within MPMX20_01659at 1758.319 kb on - strand, within MPMX20_01659at 1758.319 kb on - strand, within MPMX20_01659at 1758.436 kb on + strand, within MPMX20_01659at 1758.500 kb on + strand, within MPMX20_01659at 1758.508 kb on - strand, within MPMX20_01659at 1758.589 kb on + strand, within MPMX20_01659at 1758.597 kb on - strand, within MPMX20_01659at 1758.609 kb on + strand, within MPMX20_01659at 1758.657 kb on - strand, within MPMX20_01659at 1758.662 kb on - strand, within MPMX20_01659at 1758.711 kb on + strand, within MPMX20_01659at 1758.716 kb on + strand, within MPMX20_01659at 1758.719 kb on - strand, within MPMX20_01659at 1758.746 kb on + strand, within MPMX20_01659at 1758.746 kb on + strand, within MPMX20_01659at 1758.746 kb on + strand, within MPMX20_01659at 1758.747 kb on + strand, within MPMX20_01659at 1758.754 kb on - strand, within MPMX20_01659

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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1,755,546 + +0.0
1,755,554 - -1.6
1,755,554 - +1.0
1,755,554 - -1.0
1,755,554 - +0.4
1,755,646 + -0.1
1,755,651 + -0.6
1,755,698 - -0.1
1,755,736 - +0.8
1,755,736 - +0.5
1,755,756 - MPMX20_01656 0.12 -1.0
1,755,821 - MPMX20_01656 0.25 -1.3
1,755,823 - MPMX20_01656 0.26 +0.5
1,755,823 - MPMX20_01656 0.26 -0.0
1,755,825 + MPMX20_01656 0.26 +1.4
1,756,017 + MPMX20_01656 0.64 -1.6
1,756,042 + MPMX20_01656 0.69 +1.5
1,756,125 + MPMX20_01656 0.86 +0.1
1,756,170 + +0.6
1,756,182 - -0.2
1,756,253 + MPMX20_01657 0.19 +0.0
1,756,254 - MPMX20_01657 0.19 +0.0
1,756,261 - MPMX20_01657 0.22 -2.8
1,756,286 - MPMX20_01657 0.29 -0.4
1,756,298 - MPMX20_01657 0.33 +0.4
1,756,302 + MPMX20_01657 0.34 +0.2
1,756,329 - MPMX20_01657 0.43 +0.1
1,756,375 - MPMX20_01657 0.57 +2.0
1,756,402 + MPMX20_01657 0.65 -0.6
1,756,404 + MPMX20_01657 0.66 +2.5
1,756,411 - MPMX20_01657 0.68 +0.0
1,756,412 - MPMX20_01657 0.68 +0.2
1,756,419 - MPMX20_01657 0.70 +0.6
1,756,492 + +0.6
1,756,497 + -0.5
1,756,505 - -0.8
1,756,510 - -2.3
1,756,518 + -0.7
1,756,586 - -1.6
1,756,706 + MPMX20_01658 0.16 +1.4
1,756,706 + MPMX20_01658 0.16 +0.8
1,756,706 + MPMX20_01658 0.16 -0.4
1,756,714 - MPMX20_01658 0.17 -0.0
1,756,714 - MPMX20_01658 0.17 -0.1
1,756,714 - MPMX20_01658 0.17 +0.4
1,756,771 - MPMX20_01658 0.21 +0.5
1,756,806 + MPMX20_01658 0.24 +0.2
1,756,807 - MPMX20_01658 0.24 +0.5
1,756,854 + MPMX20_01658 0.27 +0.4
1,756,863 + MPMX20_01658 0.28 +2.9
1,756,863 + MPMX20_01658 0.28 +0.9
1,756,871 - MPMX20_01658 0.29 -0.2
1,756,871 - MPMX20_01658 0.29 +3.2
1,756,871 - MPMX20_01658 0.29 +0.5
1,756,917 + MPMX20_01658 0.32 +0.1
1,757,010 + MPMX20_01658 0.39 -0.3
1,757,050 - MPMX20_01658 0.42 +0.1
1,757,063 - MPMX20_01658 0.43 +2.2
1,757,189 + MPMX20_01658 0.53 +1.2
1,757,222 - MPMX20_01658 0.55 +0.1
1,757,251 - MPMX20_01658 0.57 -0.2
1,757,299 + MPMX20_01658 0.61 -2.4
1,757,302 - MPMX20_01658 0.61 +1.2
1,757,321 - MPMX20_01658 0.63 -0.0
1,757,367 - MPMX20_01658 0.66 -0.4
1,757,393 + MPMX20_01658 0.68 +2.1
1,757,425 + MPMX20_01658 0.71 +0.0
1,757,600 - MPMX20_01658 0.84 +1.2
1,757,626 - MPMX20_01658 0.86 -0.3
1,757,675 - MPMX20_01658 0.90 -0.5
1,757,714 + +1.7
1,757,714 + -0.8
1,757,722 - -1.3
1,757,722 - +0.0
1,757,744 + -0.8
1,757,744 + +0.3
1,757,752 - -3.6
1,757,752 - -0.2
1,757,752 - +0.8
1,757,755 + +0.1
1,757,821 + -0.4
1,757,912 - -0.7
1,757,918 - +0.6
1,758,003 + +0.3
1,758,064 - MPMX20_01659 0.10 +0.4
1,758,064 - MPMX20_01659 0.10 +0.3
1,758,082 - MPMX20_01659 0.11 +0.0
1,758,082 - MPMX20_01659 0.11 -1.7
1,758,228 - MPMX20_01659 0.21 +0.5
1,758,275 + MPMX20_01659 0.24 +0.7
1,758,277 - MPMX20_01659 0.24 -0.2
1,758,311 + MPMX20_01659 0.27 -0.7
1,758,311 + MPMX20_01659 0.27 -1.1
1,758,311 - MPMX20_01659 0.27 +0.6
1,758,319 - MPMX20_01659 0.27 -0.1
1,758,319 - MPMX20_01659 0.27 -0.8
1,758,436 + MPMX20_01659 0.35 +1.0
1,758,500 + MPMX20_01659 0.39 +1.1
1,758,508 - MPMX20_01659 0.40 +1.1
1,758,589 + MPMX20_01659 0.45 +0.9
1,758,597 - MPMX20_01659 0.46 -0.9
1,758,609 + MPMX20_01659 0.46 +0.6
1,758,657 - MPMX20_01659 0.50 -0.1
1,758,662 - MPMX20_01659 0.50 -1.3
1,758,711 + MPMX20_01659 0.53 +0.2
1,758,716 + MPMX20_01659 0.54 -0.7
1,758,719 - MPMX20_01659 0.54 +0.9
1,758,746 + MPMX20_01659 0.56 -0.5
1,758,746 + MPMX20_01659 0.56 -1.9
1,758,746 + MPMX20_01659 0.56 +1.5
1,758,747 + MPMX20_01659 0.56 +1.6
1,758,754 - MPMX20_01659 0.56 -0.5

Or see this region's nucleotide sequence