Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04491

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04490 and MPMX20_04491 are separated by 341 nucleotidesMPMX20_04491 and MPMX20_04492 are separated by 144 nucleotides MPMX20_04490: MPMX20_04490 - Transcription termination factor Rho, at 4,694,814 to 4,696,073 _04490 MPMX20_04491: MPMX20_04491 - Thioredoxin 1, at 4,696,415 to 4,696,744 _04491 MPMX20_04492: MPMX20_04492 - ATP-dependent RNA helicase RhlB, at 4,696,889 to 4,698,154 _04492 Position (kb) 4696 4697Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4696.080 kb on - strandat 4696.158 kb on - strandat 4696.173 kb on - strandat 4696.173 kb on - strandat 4696.246 kb on - strandat 4696.380 kb on - strandat 4696.418 kb on + strandat 4696.421 kb on - strandat 4696.431 kb on - strandat 4696.452 kb on + strand, within MPMX20_04491at 4696.452 kb on + strand, within MPMX20_04491at 4696.452 kb on + strand, within MPMX20_04491at 4696.460 kb on - strand, within MPMX20_04491at 4696.460 kb on - strand, within MPMX20_04491at 4696.460 kb on - strand, within MPMX20_04491at 4696.460 kb on - strand, within MPMX20_04491at 4696.504 kb on + strand, within MPMX20_04491at 4696.563 kb on + strand, within MPMX20_04491at 4696.646 kb on + strand, within MPMX20_04491at 4696.649 kb on - strand, within MPMX20_04491at 4696.672 kb on + strand, within MPMX20_04491at 4696.672 kb on + strand, within MPMX20_04491at 4696.672 kb on + strand, within MPMX20_04491at 4696.686 kb on + strand, within MPMX20_04491at 4696.686 kb on + strand, within MPMX20_04491at 4696.686 kb on + strand, within MPMX20_04491at 4696.694 kb on - strand, within MPMX20_04491at 4696.694 kb on - strand, within MPMX20_04491at 4696.702 kb on + strand, within MPMX20_04491at 4696.758 kb on + strandat 4696.759 kb on + strandat 4696.766 kb on - strandat 4696.766 kb on - strandat 4696.786 kb on + strandat 4696.786 kb on - strandat 4696.788 kb on + strandat 4696.788 kb on + strandat 4696.788 kb on + strandat 4696.788 kb on + strandat 4696.796 kb on - strandat 4696.796 kb on - strandat 4696.798 kb on - strandat 4696.866 kb on - strandat 4696.878 kb on - strandat 4696.878 kb on - strandat 4696.996 kb on + strandat 4697.004 kb on - strandat 4697.008 kb on + strandat 4697.014 kb on - strandat 4697.029 kb on + strand, within MPMX20_04492at 4697.029 kb on + strand, within MPMX20_04492at 4697.032 kb on - strand, within MPMX20_04492at 4697.039 kb on + strand, within MPMX20_04492at 4697.047 kb on - strand, within MPMX20_04492at 4697.047 kb on - strand, within MPMX20_04492at 4697.138 kb on - strand, within MPMX20_04492at 4697.152 kb on + strand, within MPMX20_04492at 4697.152 kb on + strand, within MPMX20_04492at 4697.180 kb on + strand, within MPMX20_04492at 4697.188 kb on - strand, within MPMX20_04492at 4697.188 kb on - strand, within MPMX20_04492at 4697.209 kb on + strand, within MPMX20_04492at 4697.239 kb on + strand, within MPMX20_04492at 4697.247 kb on - strand, within MPMX20_04492at 4697.331 kb on + strand, within MPMX20_04492at 4697.346 kb on + strand, within MPMX20_04492at 4697.346 kb on + strand, within MPMX20_04492at 4697.353 kb on + strand, within MPMX20_04492at 4697.353 kb on + strand, within MPMX20_04492at 4697.476 kb on + strand, within MPMX20_04492at 4697.583 kb on + strand, within MPMX20_04492at 4697.596 kb on - strand, within MPMX20_04492at 4697.647 kb on + strand, within MPMX20_04492at 4697.727 kb on + strand, within MPMX20_04492

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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4,696,080 - +2.0
4,696,158 - -1.8
4,696,173 - +1.2
4,696,173 - +0.7
4,696,246 - -0.7
4,696,380 - +1.2
4,696,418 + +0.6
4,696,421 - -3.5
4,696,431 - -0.4
4,696,452 + MPMX20_04491 0.11 -0.2
4,696,452 + MPMX20_04491 0.11 -1.9
4,696,452 + MPMX20_04491 0.11 -0.7
4,696,460 - MPMX20_04491 0.14 -1.7
4,696,460 - MPMX20_04491 0.14 -0.7
4,696,460 - MPMX20_04491 0.14 -1.2
4,696,460 - MPMX20_04491 0.14 +1.8
4,696,504 + MPMX20_04491 0.27 -1.0
4,696,563 + MPMX20_04491 0.45 -1.9
4,696,646 + MPMX20_04491 0.70 -2.5
4,696,649 - MPMX20_04491 0.71 -2.4
4,696,672 + MPMX20_04491 0.78 -2.4
4,696,672 + MPMX20_04491 0.78 -1.9
4,696,672 + MPMX20_04491 0.78 -1.3
4,696,686 + MPMX20_04491 0.82 -0.4
4,696,686 + MPMX20_04491 0.82 -1.2
4,696,686 + MPMX20_04491 0.82 -1.1
4,696,694 - MPMX20_04491 0.85 +2.0
4,696,694 - MPMX20_04491 0.85 +1.4
4,696,702 + MPMX20_04491 0.87 -0.9
4,696,758 + -1.8
4,696,759 + -2.2
4,696,766 - -0.2
4,696,766 - +0.3
4,696,786 + -0.9
4,696,786 - -0.2
4,696,788 + -1.4
4,696,788 + +1.4
4,696,788 + +2.2
4,696,788 + -2.8
4,696,796 - +0.7
4,696,796 - -0.4
4,696,798 - -3.3
4,696,866 - +1.5
4,696,878 - +0.5
4,696,878 - -1.8
4,696,996 + -0.4
4,697,004 - -1.6
4,697,008 + -3.4
4,697,014 - -0.3
4,697,029 + MPMX20_04492 0.11 -2.2
4,697,029 + MPMX20_04492 0.11 -0.1
4,697,032 - MPMX20_04492 0.11 +1.3
4,697,039 + MPMX20_04492 0.12 +1.2
4,697,047 - MPMX20_04492 0.12 +3.3
4,697,047 - MPMX20_04492 0.12 +3.0
4,697,138 - MPMX20_04492 0.20 -2.0
4,697,152 + MPMX20_04492 0.21 -0.2
4,697,152 + MPMX20_04492 0.21 +1.1
4,697,180 + MPMX20_04492 0.23 -0.6
4,697,188 - MPMX20_04492 0.24 -1.7
4,697,188 - MPMX20_04492 0.24 +0.4
4,697,209 + MPMX20_04492 0.25 -1.5
4,697,239 + MPMX20_04492 0.28 +1.6
4,697,247 - MPMX20_04492 0.28 -0.2
4,697,331 + MPMX20_04492 0.35 +0.9
4,697,346 + MPMX20_04492 0.36 -1.7
4,697,346 + MPMX20_04492 0.36 +0.7
4,697,353 + MPMX20_04492 0.37 -1.5
4,697,353 + MPMX20_04492 0.37 +0.3
4,697,476 + MPMX20_04492 0.46 -0.2
4,697,583 + MPMX20_04492 0.55 -0.6
4,697,596 - MPMX20_04492 0.56 +1.6
4,697,647 + MPMX20_04492 0.60 +1.0
4,697,727 + MPMX20_04492 0.66 +1.1

Or see this region's nucleotide sequence