Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04241 and MPMX20_04242 are separated by 54 nucleotides MPMX20_04242 and MPMX20_04243 are separated by 94 nucleotides MPMX20_04243 and MPMX20_04244 are separated by 13 nucleotides
MPMX20_04241: MPMX20_04241 - Protein SlyX, at 4,425,283 to 4,425,501
_04241
MPMX20_04242: MPMX20_04242 - hypothetical protein, at 4,425,556 to 4,426,146
_04242
MPMX20_04243: MPMX20_04243 - hypothetical protein, at 4,426,241 to 4,426,441
_04243
MPMX20_04244: MPMX20_04244 - Glutathione-regulated potassium-efflux system protein KefC, at 4,426,455 to 4,428,260
_04244
Position (kb)
4426
4427 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4425.288 kb on + strand at 4425.311 kb on + strand, within MPMX20_04241 at 4425.360 kb on + strand, within MPMX20_04241 at 4425.363 kb on + strand, within MPMX20_04241 at 4425.371 kb on - strand, within MPMX20_04241 at 4425.412 kb on + strand, within MPMX20_04241 at 4425.451 kb on - strand, within MPMX20_04241 at 4425.490 kb on + strand at 4425.490 kb on + strand at 4425.490 kb on + strand at 4425.490 kb on - strand at 4425.566 kb on + strand at 4425.571 kb on + strand at 4425.590 kb on + strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.806 kb on + strand, within MPMX20_04242 at 4425.926 kb on - strand, within MPMX20_04242 at 4426.046 kb on - strand, within MPMX20_04242 at 4426.072 kb on - strand, within MPMX20_04242 at 4426.152 kb on + strand at 4426.201 kb on + strand at 4426.203 kb on + strand at 4426.299 kb on + strand, within MPMX20_04243 at 4426.430 kb on + strand at 4426.549 kb on + strand at 4426.549 kb on + strand at 4426.557 kb on - strand at 4426.572 kb on - strand at 4426.588 kb on - strand at 4426.595 kb on + strand at 4426.603 kb on - strand at 4426.642 kb on - strand, within MPMX20_04244 at 4426.732 kb on + strand, within MPMX20_04244 at 4426.781 kb on - strand, within MPMX20_04244 at 4426.786 kb on - strand, within MPMX20_04244 at 4426.813 kb on + strand, within MPMX20_04244 at 4426.840 kb on - strand, within MPMX20_04244 at 4426.903 kb on - strand, within MPMX20_04244 at 4426.903 kb on - strand, within MPMX20_04244 at 4426.904 kb on + strand, within MPMX20_04244 at 4426.962 kb on + strand, within MPMX20_04244 at 4426.971 kb on + strand, within MPMX20_04244 at 4426.971 kb on + strand, within MPMX20_04244 at 4426.977 kb on - strand, within MPMX20_04244 at 4427.019 kb on - strand, within MPMX20_04244 at 4427.024 kb on + strand, within MPMX20_04244 at 4427.032 kb on - strand, within MPMX20_04244 at 4427.105 kb on + strand, within MPMX20_04244 at 4427.137 kb on + strand, within MPMX20_04244 at 4427.169 kb on + strand, within MPMX20_04244 at 4427.187 kb on + strand, within MPMX20_04244 at 4427.214 kb on - strand, within MPMX20_04244 at 4427.233 kb on + strand, within MPMX20_04244 at 4427.233 kb on + strand, within MPMX20_04244 at 4427.233 kb on + strand, within MPMX20_04244 at 4427.241 kb on - strand, within MPMX20_04244 at 4427.267 kb on + strand, within MPMX20_04244 at 4427.275 kb on - strand, within MPMX20_04244 at 4427.275 kb on - strand, within MPMX20_04244 at 4427.286 kb on + strand, within MPMX20_04244 at 4427.294 kb on + strand, within MPMX20_04244 at 4427.294 kb on + strand, within MPMX20_04244 at 4427.294 kb on + strand, within MPMX20_04244 at 4427.294 kb on + strand, within MPMX20_04244 at 4427.294 kb on + strand, within MPMX20_04244 at 4427.299 kb on + strand, within MPMX20_04244 at 4427.307 kb on - strand, within MPMX20_04244 at 4427.307 kb on - strand, within MPMX20_04244 at 4427.311 kb on + strand, within MPMX20_04244 at 4427.360 kb on + strand, within MPMX20_04244 at 4427.363 kb on + strand, within MPMX20_04244 at 4427.371 kb on + strand, within MPMX20_04244 at 4427.371 kb on - strand, within MPMX20_04244 at 4427.385 kb on + strand, within MPMX20_04244 at 4427.400 kb on + strand, within MPMX20_04244 at 4427.411 kb on + strand, within MPMX20_04244 at 4427.415 kb on - strand, within MPMX20_04244 at 4427.417 kb on + strand, within MPMX20_04244
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 4,425,288 + +1.5 4,425,311 + MPMX20_04241 0.13 +0.3 4,425,360 + MPMX20_04241 0.35 +3.7 4,425,363 + MPMX20_04241 0.37 +0.3 4,425,371 - MPMX20_04241 0.40 -2.8 4,425,412 + MPMX20_04241 0.59 +1.5 4,425,451 - MPMX20_04241 0.77 +0.8 4,425,490 + -1.7 4,425,490 + -0.2 4,425,490 + +1.6 4,425,490 - +0.1 4,425,566 + -0.1 4,425,571 + -3.3 4,425,590 + +0.1 4,425,598 - +1.0 4,425,598 - +2.0 4,425,598 - -0.7 4,425,598 - -1.8 4,425,598 - -4.1 4,425,598 - +0.1 4,425,598 - -0.2 4,425,806 + MPMX20_04242 0.42 -1.0 4,425,926 - MPMX20_04242 0.63 -2.7 4,426,046 - MPMX20_04242 0.83 +0.1 4,426,072 - MPMX20_04242 0.87 +0.1 4,426,152 + +0.8 4,426,201 + -2.7 4,426,203 + +0.1 4,426,299 + MPMX20_04243 0.29 -1.0 4,426,430 + +0.6 4,426,549 + +1.4 4,426,549 + +0.6 4,426,557 - -0.9 4,426,572 - -0.7 4,426,588 - +1.2 4,426,595 + -0.3 4,426,603 - +2.2 4,426,642 - MPMX20_04244 0.10 +1.3 4,426,732 + MPMX20_04244 0.15 +3.3 4,426,781 - MPMX20_04244 0.18 +2.1 4,426,786 - MPMX20_04244 0.18 -1.2 4,426,813 + MPMX20_04244 0.20 +0.5 4,426,840 - MPMX20_04244 0.21 -3.9 4,426,903 - MPMX20_04244 0.25 +1.7 4,426,903 - MPMX20_04244 0.25 -0.0 4,426,904 + MPMX20_04244 0.25 +2.9 4,426,962 + MPMX20_04244 0.28 +1.2 4,426,971 + MPMX20_04244 0.29 +3.4 4,426,971 + MPMX20_04244 0.29 -0.1 4,426,977 - MPMX20_04244 0.29 -0.3 4,427,019 - MPMX20_04244 0.31 -3.7 4,427,024 + MPMX20_04244 0.32 +1.6 4,427,032 - MPMX20_04244 0.32 +0.7 4,427,105 + MPMX20_04244 0.36 -0.4 4,427,137 + MPMX20_04244 0.38 -1.5 4,427,169 + MPMX20_04244 0.40 -1.4 4,427,187 + MPMX20_04244 0.41 -1.1 4,427,214 - MPMX20_04244 0.42 -0.7 4,427,233 + MPMX20_04244 0.43 +1.3 4,427,233 + MPMX20_04244 0.43 -0.1 4,427,233 + MPMX20_04244 0.43 -3.8 4,427,241 - MPMX20_04244 0.44 -0.6 4,427,267 + MPMX20_04244 0.45 -1.7 4,427,275 - MPMX20_04244 0.45 -0.5 4,427,275 - MPMX20_04244 0.45 -1.3 4,427,286 + MPMX20_04244 0.46 -0.1 4,427,294 + MPMX20_04244 0.46 +1.0 4,427,294 + MPMX20_04244 0.46 -0.0 4,427,294 + MPMX20_04244 0.46 -1.7 4,427,294 + MPMX20_04244 0.46 -2.1 4,427,294 + MPMX20_04244 0.46 +4.2 4,427,299 + MPMX20_04244 0.47 -0.7 4,427,307 - MPMX20_04244 0.47 +1.7 4,427,307 - MPMX20_04244 0.47 +1.6 4,427,311 + MPMX20_04244 0.47 +1.4 4,427,360 + MPMX20_04244 0.50 +1.3 4,427,363 + MPMX20_04244 0.50 -1.1 4,427,371 + MPMX20_04244 0.51 -0.1 4,427,371 - MPMX20_04244 0.51 -1.4 4,427,385 + MPMX20_04244 0.51 -0.5 4,427,400 + MPMX20_04244 0.52 -2.6 4,427,411 + MPMX20_04244 0.53 +1.4 4,427,415 - MPMX20_04244 0.53 -3.3 4,427,417 + MPMX20_04244 0.53 -0.9
Or see this region's nucleotide sequence