Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03675

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03673 and MPMX20_03674 overlap by 1 nucleotidesMPMX20_03674 and MPMX20_03675 overlap by 10 nucleotidesMPMX20_03675 and MPMX20_03676 are separated by 76 nucleotides MPMX20_03673: MPMX20_03673 - Cysteine desulfurase CsdA, at 3,867,937 to 3,869,142 _03673 MPMX20_03674: MPMX20_03674 - Sulfur acceptor protein CsdE, at 3,869,142 to 3,869,588 _03674 MPMX20_03675: MPMX20_03675 - tRNA threonylcarbamoyladenosine dehydratase, at 3,869,579 to 3,870,385 _03675 MPMX20_03676: MPMX20_03676 - Membrane-bound lytic murein transglycosylase A, at 3,870,462 to 3,871,559 _03676 Position (kb) 3869 3870 3871Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3868.610 kb on + strand, within MPMX20_03673at 3868.618 kb on - strand, within MPMX20_03673at 3868.619 kb on + strand, within MPMX20_03673at 3868.689 kb on - strand, within MPMX20_03673at 3868.711 kb on - strand, within MPMX20_03673at 3868.711 kb on - strand, within MPMX20_03673at 3868.739 kb on - strand, within MPMX20_03673at 3868.761 kb on - strand, within MPMX20_03673at 3868.811 kb on - strand, within MPMX20_03673at 3868.910 kb on + strand, within MPMX20_03673at 3868.918 kb on - strand, within MPMX20_03673at 3868.948 kb on - strand, within MPMX20_03673at 3868.961 kb on - strand, within MPMX20_03673at 3868.982 kb on + strand, within MPMX20_03673at 3869.007 kb on - strand, within MPMX20_03673at 3869.007 kb on - strand, within MPMX20_03673at 3869.050 kb on - strandat 3869.068 kb on - strandat 3869.070 kb on + strandat 3869.100 kb on + strandat 3869.108 kb on - strandat 3869.386 kb on + strand, within MPMX20_03674at 3869.446 kb on - strand, within MPMX20_03674at 3869.510 kb on + strand, within MPMX20_03674at 3869.510 kb on + strand, within MPMX20_03674at 3869.527 kb on + strand, within MPMX20_03674at 3869.564 kb on - strandat 3869.595 kb on + strandat 3869.941 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.035 kb on - strand, within MPMX20_03675at 3870.076 kb on - strand, within MPMX20_03675at 3870.129 kb on + strand, within MPMX20_03675at 3870.147 kb on - strand, within MPMX20_03675at 3870.157 kb on + strand, within MPMX20_03675at 3870.157 kb on + strand, within MPMX20_03675at 3870.260 kb on - strand, within MPMX20_03675at 3870.287 kb on + strand, within MPMX20_03675at 3870.339 kb on - strandat 3870.376 kb on - strandat 3870.391 kb on - strandat 3870.405 kb on - strandat 3870.441 kb on + strandat 3870.446 kb on + strandat 3870.499 kb on - strandat 3870.504 kb on - strandat 3870.524 kb on + strandat 3870.532 kb on - strandat 3870.597 kb on - strand, within MPMX20_03676at 3870.597 kb on - strand, within MPMX20_03676at 3870.663 kb on + strand, within MPMX20_03676at 3870.679 kb on + strand, within MPMX20_03676at 3870.717 kb on + strand, within MPMX20_03676at 3870.773 kb on + strand, within MPMX20_03676at 3870.831 kb on + strand, within MPMX20_03676at 3870.848 kb on + strand, within MPMX20_03676at 3870.920 kb on - strand, within MPMX20_03676at 3870.939 kb on + strand, within MPMX20_03676at 3870.972 kb on + strand, within MPMX20_03676at 3870.980 kb on - strand, within MPMX20_03676at 3870.980 kb on - strand, within MPMX20_03676at 3871.011 kb on + strand, within MPMX20_03676at 3871.019 kb on - strand, within MPMX20_03676at 3871.079 kb on + strand, within MPMX20_03676at 3871.117 kb on - strand, within MPMX20_03676at 3871.176 kb on + strand, within MPMX20_03676at 3871.277 kb on + strand, within MPMX20_03676at 3871.302 kb on + strand, within MPMX20_03676at 3871.302 kb on + strand, within MPMX20_03676at 3871.302 kb on + strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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3,868,610 + MPMX20_03673 0.56 -3.3
3,868,618 - MPMX20_03673 0.56 +1.3
3,868,619 + MPMX20_03673 0.57 -1.6
3,868,689 - MPMX20_03673 0.62 -0.4
3,868,711 - MPMX20_03673 0.64 -0.6
3,868,711 - MPMX20_03673 0.64 -0.4
3,868,739 - MPMX20_03673 0.67 +0.0
3,868,761 - MPMX20_03673 0.68 -3.3
3,868,811 - MPMX20_03673 0.72 -3.4
3,868,910 + MPMX20_03673 0.81 +0.1
3,868,918 - MPMX20_03673 0.81 +0.3
3,868,948 - MPMX20_03673 0.84 -0.4
3,868,961 - MPMX20_03673 0.85 +0.9
3,868,982 + MPMX20_03673 0.87 -0.2
3,869,007 - MPMX20_03673 0.89 +1.1
3,869,007 - MPMX20_03673 0.89 +1.2
3,869,050 - +1.1
3,869,068 - +1.0
3,869,070 + -0.8
3,869,100 + +0.2
3,869,108 - -0.6
3,869,386 + MPMX20_03674 0.55 -3.4
3,869,446 - MPMX20_03674 0.68 +1.6
3,869,510 + MPMX20_03674 0.82 +0.4
3,869,510 + MPMX20_03674 0.82 +0.4
3,869,527 + MPMX20_03674 0.86 +0.7
3,869,564 - -2.2
3,869,595 + -2.0
3,869,941 + MPMX20_03675 0.45 -1.1
3,870,017 + MPMX20_03675 0.54 -1.5
3,870,017 + MPMX20_03675 0.54 -2.1
3,870,017 + MPMX20_03675 0.54 -1.3
3,870,035 - MPMX20_03675 0.57 -2.3
3,870,076 - MPMX20_03675 0.62 -2.4
3,870,129 + MPMX20_03675 0.68 -1.4
3,870,147 - MPMX20_03675 0.70 -1.7
3,870,157 + MPMX20_03675 0.72 +0.5
3,870,157 + MPMX20_03675 0.72 -0.3
3,870,260 - MPMX20_03675 0.84 +0.9
3,870,287 + MPMX20_03675 0.88 -1.6
3,870,339 - -3.1
3,870,376 - -1.4
3,870,391 - -0.2
3,870,405 - -0.4
3,870,441 + -2.9
3,870,446 + -1.5
3,870,499 - -0.5
3,870,504 - -1.4
3,870,524 + -1.6
3,870,532 - -1.8
3,870,597 - MPMX20_03676 0.12 -0.2
3,870,597 - MPMX20_03676 0.12 -1.1
3,870,663 + MPMX20_03676 0.18 +2.1
3,870,679 + MPMX20_03676 0.20 +2.5
3,870,717 + MPMX20_03676 0.23 -0.4
3,870,773 + MPMX20_03676 0.28 -1.1
3,870,831 + MPMX20_03676 0.34 +0.5
3,870,848 + MPMX20_03676 0.35 +0.2
3,870,920 - MPMX20_03676 0.42 +0.9
3,870,939 + MPMX20_03676 0.43 -1.4
3,870,972 + MPMX20_03676 0.46 +0.1
3,870,980 - MPMX20_03676 0.47 -0.5
3,870,980 - MPMX20_03676 0.47 -0.8
3,871,011 + MPMX20_03676 0.50 -2.7
3,871,019 - MPMX20_03676 0.51 +0.6
3,871,079 + MPMX20_03676 0.56 +0.4
3,871,117 - MPMX20_03676 0.60 +0.6
3,871,176 + MPMX20_03676 0.65 -1.3
3,871,277 + MPMX20_03676 0.74 +2.2
3,871,302 + MPMX20_03676 0.77 -1.5
3,871,302 + MPMX20_03676 0.77 +0.2
3,871,302 + MPMX20_03676 0.77 -1.7
3,871,310 - MPMX20_03676 0.77 +0.1
3,871,310 - MPMX20_03676 0.77 +0.0
3,871,310 - MPMX20_03676 0.77 +1.4
3,871,310 - MPMX20_03676 0.77 -1.6

Or see this region's nucleotide sequence