Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03379 and MPMX20_03380 are separated by 88 nucleotides MPMX20_03380 and MPMX20_03381 are separated by 146 nucleotides
MPMX20_03379: MPMX20_03379 - Putative NADP-dependent oxidoreductase YfmJ, at 3,557,676 to 3,558,707
_03379
MPMX20_03380: MPMX20_03380 - hypothetical protein, at 3,558,796 to 3,559,428
_03380
MPMX20_03381: MPMX20_03381 - GMP synthase [glutamine-hydrolyzing], at 3,559,575 to 3,561,152
_03381
Position (kb)
3558
3559
3560 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3557.800 kb on - strand, within MPMX20_03379 at 3557.872 kb on - strand, within MPMX20_03379 at 3557.885 kb on + strand, within MPMX20_03379 at 3557.885 kb on + strand, within MPMX20_03379 at 3557.893 kb on - strand, within MPMX20_03379 at 3557.947 kb on - strand, within MPMX20_03379 at 3558.019 kb on - strand, within MPMX20_03379 at 3558.019 kb on - strand, within MPMX20_03379 at 3558.141 kb on - strand, within MPMX20_03379 at 3558.221 kb on + strand, within MPMX20_03379 at 3558.279 kb on - strand, within MPMX20_03379 at 3558.279 kb on - strand, within MPMX20_03379 at 3558.279 kb on - strand, within MPMX20_03379 at 3558.295 kb on + strand, within MPMX20_03379 at 3558.310 kb on + strand, within MPMX20_03379 at 3558.380 kb on - strand, within MPMX20_03379 at 3558.427 kb on - strand, within MPMX20_03379 at 3558.486 kb on + strand, within MPMX20_03379 at 3558.535 kb on + strand, within MPMX20_03379 at 3558.536 kb on - strand, within MPMX20_03379 at 3558.705 kb on - strand at 3558.711 kb on - strand at 3558.724 kb on + strand at 3558.796 kb on - strand at 3558.819 kb on - strand at 3558.827 kb on - strand at 3558.839 kb on + strand at 3558.847 kb on - strand at 3558.863 kb on + strand, within MPMX20_03380 at 3558.958 kb on - strand, within MPMX20_03380 at 3558.958 kb on - strand, within MPMX20_03380 at 3558.960 kb on - strand, within MPMX20_03380 at 3559.048 kb on - strand, within MPMX20_03380 at 3559.129 kb on - strand, within MPMX20_03380 at 3559.237 kb on + strand, within MPMX20_03380 at 3559.250 kb on + strand, within MPMX20_03380 at 3559.273 kb on + strand, within MPMX20_03380 at 3559.295 kb on + strand, within MPMX20_03380 at 3559.366 kb on + strand at 3559.366 kb on + strand at 3559.399 kb on + strand at 3559.405 kb on - strand at 3559.480 kb on + strand at 3559.488 kb on - strand at 3559.532 kb on + strand at 3559.555 kb on + strand at 3559.563 kb on - strand at 3559.580 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 3,557,800 - MPMX20_03379 0.12 +0.2 3,557,872 - MPMX20_03379 0.19 -1.0 3,557,885 + MPMX20_03379 0.20 -1.8 3,557,885 + MPMX20_03379 0.20 +1.2 3,557,893 - MPMX20_03379 0.21 +1.6 3,557,947 - MPMX20_03379 0.26 +1.1 3,558,019 - MPMX20_03379 0.33 +0.8 3,558,019 - MPMX20_03379 0.33 +0.8 3,558,141 - MPMX20_03379 0.45 +1.7 3,558,221 + MPMX20_03379 0.53 -1.6 3,558,279 - MPMX20_03379 0.58 +1.3 3,558,279 - MPMX20_03379 0.58 +2.7 3,558,279 - MPMX20_03379 0.58 +0.3 3,558,295 + MPMX20_03379 0.60 -1.5 3,558,310 + MPMX20_03379 0.61 +1.4 3,558,380 - MPMX20_03379 0.68 +0.7 3,558,427 - MPMX20_03379 0.73 -0.0 3,558,486 + MPMX20_03379 0.78 +0.9 3,558,535 + MPMX20_03379 0.83 +0.8 3,558,536 - MPMX20_03379 0.83 -1.5 3,558,705 - +1.0 3,558,711 - +2.5 3,558,724 + -1.7 3,558,796 - -1.5 3,558,819 - -1.0 3,558,827 - -0.3 3,558,839 + +0.3 3,558,847 - +2.5 3,558,863 + MPMX20_03380 0.11 -2.6 3,558,958 - MPMX20_03380 0.26 -2.3 3,558,958 - MPMX20_03380 0.26 -1.5 3,558,960 - MPMX20_03380 0.26 -2.7 3,559,048 - MPMX20_03380 0.40 -0.2 3,559,129 - MPMX20_03380 0.53 -0.5 3,559,237 + MPMX20_03380 0.70 -4.0 3,559,250 + MPMX20_03380 0.72 +1.6 3,559,273 + MPMX20_03380 0.75 -1.4 3,559,295 + MPMX20_03380 0.79 -1.8 3,559,366 + -2.2 3,559,366 + +0.4 3,559,399 + -0.8 3,559,405 - -1.4 3,559,480 + +0.1 3,559,488 - -2.3 3,559,532 + -2.7 3,559,555 + -0.8 3,559,563 - +0.3 3,559,580 - -3.4
Or see this region's nucleotide sequence