Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03380

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03379 and MPMX20_03380 are separated by 88 nucleotidesMPMX20_03380 and MPMX20_03381 are separated by 146 nucleotides MPMX20_03379: MPMX20_03379 - Putative NADP-dependent oxidoreductase YfmJ, at 3,557,676 to 3,558,707 _03379 MPMX20_03380: MPMX20_03380 - hypothetical protein, at 3,558,796 to 3,559,428 _03380 MPMX20_03381: MPMX20_03381 - GMP synthase [glutamine-hydrolyzing], at 3,559,575 to 3,561,152 _03381 Position (kb) 3558 3559 3560Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3557.800 kb on - strand, within MPMX20_03379at 3557.872 kb on - strand, within MPMX20_03379at 3557.885 kb on + strand, within MPMX20_03379at 3557.885 kb on + strand, within MPMX20_03379at 3557.893 kb on - strand, within MPMX20_03379at 3557.947 kb on - strand, within MPMX20_03379at 3558.019 kb on - strand, within MPMX20_03379at 3558.019 kb on - strand, within MPMX20_03379at 3558.141 kb on - strand, within MPMX20_03379at 3558.221 kb on + strand, within MPMX20_03379at 3558.279 kb on - strand, within MPMX20_03379at 3558.279 kb on - strand, within MPMX20_03379at 3558.279 kb on - strand, within MPMX20_03379at 3558.295 kb on + strand, within MPMX20_03379at 3558.310 kb on + strand, within MPMX20_03379at 3558.380 kb on - strand, within MPMX20_03379at 3558.427 kb on - strand, within MPMX20_03379at 3558.486 kb on + strand, within MPMX20_03379at 3558.535 kb on + strand, within MPMX20_03379at 3558.536 kb on - strand, within MPMX20_03379at 3558.705 kb on - strandat 3558.711 kb on - strandat 3558.724 kb on + strandat 3558.796 kb on - strandat 3558.819 kb on - strandat 3558.827 kb on - strandat 3558.839 kb on + strandat 3558.847 kb on - strandat 3558.863 kb on + strand, within MPMX20_03380at 3558.958 kb on - strand, within MPMX20_03380at 3558.958 kb on - strand, within MPMX20_03380at 3558.960 kb on - strand, within MPMX20_03380at 3559.048 kb on - strand, within MPMX20_03380at 3559.129 kb on - strand, within MPMX20_03380at 3559.237 kb on + strand, within MPMX20_03380at 3559.250 kb on + strand, within MPMX20_03380at 3559.273 kb on + strand, within MPMX20_03380at 3559.295 kb on + strand, within MPMX20_03380at 3559.366 kb on + strandat 3559.366 kb on + strandat 3559.399 kb on + strandat 3559.405 kb on - strandat 3559.480 kb on + strandat 3559.488 kb on - strandat 3559.532 kb on + strandat 3559.555 kb on + strandat 3559.563 kb on - strandat 3559.580 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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3,557,800 - MPMX20_03379 0.12 +0.2
3,557,872 - MPMX20_03379 0.19 -1.0
3,557,885 + MPMX20_03379 0.20 -1.8
3,557,885 + MPMX20_03379 0.20 +1.2
3,557,893 - MPMX20_03379 0.21 +1.6
3,557,947 - MPMX20_03379 0.26 +1.1
3,558,019 - MPMX20_03379 0.33 +0.8
3,558,019 - MPMX20_03379 0.33 +0.8
3,558,141 - MPMX20_03379 0.45 +1.7
3,558,221 + MPMX20_03379 0.53 -1.6
3,558,279 - MPMX20_03379 0.58 +1.3
3,558,279 - MPMX20_03379 0.58 +2.7
3,558,279 - MPMX20_03379 0.58 +0.3
3,558,295 + MPMX20_03379 0.60 -1.5
3,558,310 + MPMX20_03379 0.61 +1.4
3,558,380 - MPMX20_03379 0.68 +0.7
3,558,427 - MPMX20_03379 0.73 -0.0
3,558,486 + MPMX20_03379 0.78 +0.9
3,558,535 + MPMX20_03379 0.83 +0.8
3,558,536 - MPMX20_03379 0.83 -1.5
3,558,705 - +1.0
3,558,711 - +2.5
3,558,724 + -1.7
3,558,796 - -1.5
3,558,819 - -1.0
3,558,827 - -0.3
3,558,839 + +0.3
3,558,847 - +2.5
3,558,863 + MPMX20_03380 0.11 -2.6
3,558,958 - MPMX20_03380 0.26 -2.3
3,558,958 - MPMX20_03380 0.26 -1.5
3,558,960 - MPMX20_03380 0.26 -2.7
3,559,048 - MPMX20_03380 0.40 -0.2
3,559,129 - MPMX20_03380 0.53 -0.5
3,559,237 + MPMX20_03380 0.70 -4.0
3,559,250 + MPMX20_03380 0.72 +1.6
3,559,273 + MPMX20_03380 0.75 -1.4
3,559,295 + MPMX20_03380 0.79 -1.8
3,559,366 + -2.2
3,559,366 + +0.4
3,559,399 + -0.8
3,559,405 - -1.4
3,559,480 + +0.1
3,559,488 - -2.3
3,559,532 + -2.7
3,559,555 + -0.8
3,559,563 - +0.3
3,559,580 - -3.4

Or see this region's nucleotide sequence