Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03135

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03134 and MPMX20_03135 overlap by 4 nucleotidesMPMX20_03135 and MPMX20_03136 are separated by 164 nucleotidesMPMX20_03136 and MPMX20_03137 are separated by 43 nucleotides MPMX20_03134: MPMX20_03134 - Sugar efflux transporter B, at 3,294,179 to 3,295,360 _03134 MPMX20_03135: MPMX20_03135 - hypothetical protein, at 3,295,357 to 3,295,611 _03135 MPMX20_03136: MPMX20_03136 - Elongation factor P-like protein, at 3,295,776 to 3,296,348 _03136 MPMX20_03137: MPMX20_03137 - Mannonate dehydratase, at 3,296,392 to 3,297,582 _03137 Position (kb) 3295 3296Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3294.455 kb on + strand, within MPMX20_03134at 3294.455 kb on + strand, within MPMX20_03134at 3294.463 kb on - strand, within MPMX20_03134at 3294.463 kb on - strand, within MPMX20_03134at 3294.612 kb on + strand, within MPMX20_03134at 3294.612 kb on + strand, within MPMX20_03134at 3294.620 kb on - strand, within MPMX20_03134at 3294.620 kb on - strand, within MPMX20_03134at 3294.620 kb on - strand, within MPMX20_03134at 3294.636 kb on + strand, within MPMX20_03134at 3294.640 kb on + strand, within MPMX20_03134at 3294.654 kb on - strand, within MPMX20_03134at 3294.674 kb on - strand, within MPMX20_03134at 3294.684 kb on + strand, within MPMX20_03134at 3294.711 kb on - strand, within MPMX20_03134at 3294.778 kb on + strand, within MPMX20_03134at 3294.786 kb on - strand, within MPMX20_03134at 3294.806 kb on + strand, within MPMX20_03134at 3294.820 kb on - strand, within MPMX20_03134at 3294.835 kb on + strand, within MPMX20_03134at 3294.884 kb on - strand, within MPMX20_03134at 3294.884 kb on - strand, within MPMX20_03134at 3294.941 kb on + strand, within MPMX20_03134at 3294.949 kb on + strand, within MPMX20_03134at 3294.988 kb on - strand, within MPMX20_03134at 3294.996 kb on - strand, within MPMX20_03134at 3295.060 kb on + strand, within MPMX20_03134at 3295.097 kb on - strand, within MPMX20_03134at 3295.099 kb on - strand, within MPMX20_03134at 3295.159 kb on + strand, within MPMX20_03134at 3295.174 kb on + strand, within MPMX20_03134at 3295.189 kb on + strand, within MPMX20_03134at 3295.273 kb on + strandat 3295.294 kb on + strandat 3295.302 kb on - strandat 3295.324 kb on + strandat 3295.402 kb on - strand, within MPMX20_03135at 3295.415 kb on + strand, within MPMX20_03135at 3295.425 kb on + strand, within MPMX20_03135at 3295.437 kb on + strand, within MPMX20_03135at 3295.445 kb on - strand, within MPMX20_03135at 3295.572 kb on + strand, within MPMX20_03135at 3295.592 kb on + strandat 3295.645 kb on + strandat 3295.645 kb on + strandat 3295.653 kb on - strandat 3295.662 kb on + strandat 3295.662 kb on + strandat 3295.662 kb on + strandat 3295.662 kb on + strandat 3295.670 kb on - strandat 3295.670 kb on - strandat 3295.670 kb on - strandat 3295.755 kb on + strandat 3295.763 kb on - strandat 3295.773 kb on - strandat 3295.773 kb on - strandat 3295.778 kb on + strandat 3295.859 kb on + strand, within MPMX20_03136at 3295.879 kb on + strand, within MPMX20_03136at 3295.879 kb on + strand, within MPMX20_03136at 3295.879 kb on + strand, within MPMX20_03136at 3295.911 kb on - strand, within MPMX20_03136at 3295.915 kb on + strand, within MPMX20_03136at 3295.919 kb on - strand, within MPMX20_03136at 3295.971 kb on + strand, within MPMX20_03136at 3295.971 kb on + strand, within MPMX20_03136at 3296.047 kb on - strand, within MPMX20_03136at 3296.047 kb on - strand, within MPMX20_03136at 3296.047 kb on - strand, within MPMX20_03136at 3296.049 kb on + strand, within MPMX20_03136at 3296.057 kb on - strand, within MPMX20_03136at 3296.129 kb on + strand, within MPMX20_03136at 3296.132 kb on - strand, within MPMX20_03136at 3296.170 kb on + strand, within MPMX20_03136at 3296.196 kb on + strand, within MPMX20_03136at 3296.265 kb on - strand, within MPMX20_03136at 3296.398 kb on - strandat 3296.430 kb on + strandat 3296.430 kb on + strandat 3296.451 kb on - strandat 3296.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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3,294,455 + MPMX20_03134 0.23 -1.4
3,294,455 + MPMX20_03134 0.23 +1.5
3,294,463 - MPMX20_03134 0.24 -1.3
3,294,463 - MPMX20_03134 0.24 +1.0
3,294,612 + MPMX20_03134 0.37 +1.3
3,294,612 + MPMX20_03134 0.37 +0.8
3,294,620 - MPMX20_03134 0.37 +3.8
3,294,620 - MPMX20_03134 0.37 -2.2
3,294,620 - MPMX20_03134 0.37 -1.9
3,294,636 + MPMX20_03134 0.39 +0.2
3,294,640 + MPMX20_03134 0.39 +0.6
3,294,654 - MPMX20_03134 0.40 +0.5
3,294,674 - MPMX20_03134 0.42 +1.0
3,294,684 + MPMX20_03134 0.43 -3.0
3,294,711 - MPMX20_03134 0.45 +2.2
3,294,778 + MPMX20_03134 0.51 +1.2
3,294,786 - MPMX20_03134 0.51 -1.4
3,294,806 + MPMX20_03134 0.53 +3.0
3,294,820 - MPMX20_03134 0.54 +0.0
3,294,835 + MPMX20_03134 0.55 -2.3
3,294,884 - MPMX20_03134 0.60 -0.9
3,294,884 - MPMX20_03134 0.60 -2.0
3,294,941 + MPMX20_03134 0.64 -0.3
3,294,949 + MPMX20_03134 0.65 +1.6
3,294,988 - MPMX20_03134 0.68 +1.2
3,294,996 - MPMX20_03134 0.69 +4.1
3,295,060 + MPMX20_03134 0.75 +2.2
3,295,097 - MPMX20_03134 0.78 +2.4
3,295,099 - MPMX20_03134 0.78 +1.6
3,295,159 + MPMX20_03134 0.83 +1.2
3,295,174 + MPMX20_03134 0.84 -2.6
3,295,189 + MPMX20_03134 0.85 +1.7
3,295,273 + +0.0
3,295,294 + +2.1
3,295,302 - +1.0
3,295,324 + +0.7
3,295,402 - MPMX20_03135 0.18 +0.1
3,295,415 + MPMX20_03135 0.23 -2.6
3,295,425 + MPMX20_03135 0.27 -3.0
3,295,437 + MPMX20_03135 0.31 -2.2
3,295,445 - MPMX20_03135 0.35 +2.0
3,295,572 + MPMX20_03135 0.84 -3.8
3,295,592 + +1.2
3,295,645 + +0.1
3,295,645 + +0.8
3,295,653 - +1.7
3,295,662 + +1.0
3,295,662 + +1.0
3,295,662 + +1.7
3,295,662 + +0.8
3,295,670 - +1.0
3,295,670 - +0.0
3,295,670 - +0.8
3,295,755 + +0.5
3,295,763 - +0.7
3,295,773 - -3.5
3,295,773 - -2.2
3,295,778 + +1.0
3,295,859 + MPMX20_03136 0.14 -2.4
3,295,879 + MPMX20_03136 0.18 -2.2
3,295,879 + MPMX20_03136 0.18 -2.4
3,295,879 + MPMX20_03136 0.18 +0.4
3,295,911 - MPMX20_03136 0.24 +2.0
3,295,915 + MPMX20_03136 0.24 -0.3
3,295,919 - MPMX20_03136 0.25 -2.8
3,295,971 + MPMX20_03136 0.34 -2.0
3,295,971 + MPMX20_03136 0.34 +1.1
3,296,047 - MPMX20_03136 0.47 -2.5
3,296,047 - MPMX20_03136 0.47 -0.4
3,296,047 - MPMX20_03136 0.47 +0.1
3,296,049 + MPMX20_03136 0.48 -1.8
3,296,057 - MPMX20_03136 0.49 -1.9
3,296,129 + MPMX20_03136 0.62 +0.8
3,296,132 - MPMX20_03136 0.62 -0.4
3,296,170 + MPMX20_03136 0.69 +1.5
3,296,196 + MPMX20_03136 0.73 -0.9
3,296,265 - MPMX20_03136 0.85 +0.3
3,296,398 - -4.4
3,296,430 + +1.2
3,296,430 + +0.4
3,296,451 - +1.5
3,296,464 - -2.9

Or see this region's nucleotide sequence