Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03094 and MPMX20_03095 are separated by 69 nucleotides MPMX20_03095 and MPMX20_03096 overlap by 26 nucleotides MPMX20_03096 and MPMX20_03097 overlap by 17 nucleotides MPMX20_03097 and MPMX20_03098 overlap by 8 nucleotides
MPMX20_03094: MPMX20_03094 - HTH-type transcriptional regulator MlrA, at 3,247,503 to 3,248,243
_03094
MPMX20_03095: MPMX20_03095 - hypothetical protein, at 3,248,313 to 3,248,426
_03095
MPMX20_03096: MPMX20_03096 - Glycine betaine uptake system permease protein YehW, at 3,248,401 to 3,249,138
_03096
MPMX20_03097: MPMX20_03097 - Glycine betaine uptake system ATP-binding protein YehX, at 3,249,122 to 3,250,072
_03097
MPMX20_03098: MPMX20_03098 - Glycine betaine uptake system permease protein YehY, at 3,250,065 to 3,251,222
_03098
Position (kb)
3248
3249
3250 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3247.483 kb on + strand at 3247.491 kb on - strand at 3247.543 kb on - strand at 3247.579 kb on + strand, within MPMX20_03094 at 3247.611 kb on - strand, within MPMX20_03094 at 3247.681 kb on - strand, within MPMX20_03094 at 3247.810 kb on + strand, within MPMX20_03094 at 3247.884 kb on - strand, within MPMX20_03094 at 3247.925 kb on + strand, within MPMX20_03094 at 3248.016 kb on - strand, within MPMX20_03094 at 3248.085 kb on + strand, within MPMX20_03094 at 3248.186 kb on - strand at 3248.204 kb on + strand at 3248.254 kb on - strand at 3248.268 kb on - strand at 3248.278 kb on + strand at 3248.286 kb on - strand at 3248.385 kb on - strand, within MPMX20_03095 at 3248.385 kb on - strand, within MPMX20_03095 at 3248.385 kb on - strand, within MPMX20_03095 at 3248.654 kb on + strand, within MPMX20_03096 at 3248.681 kb on + strand, within MPMX20_03096 at 3248.697 kb on - strand, within MPMX20_03096 at 3248.724 kb on + strand, within MPMX20_03096 at 3248.916 kb on - strand, within MPMX20_03096 at 3248.936 kb on - strand, within MPMX20_03096 at 3249.107 kb on + strand at 3249.115 kb on - strand at 3249.139 kb on - strand at 3249.146 kb on - strand at 3249.183 kb on - strand at 3249.263 kb on + strand, within MPMX20_03097 at 3249.332 kb on - strand, within MPMX20_03097 at 3249.409 kb on - strand, within MPMX20_03097 at 3249.492 kb on - strand, within MPMX20_03097 at 3249.517 kb on + strand, within MPMX20_03097 at 3249.547 kb on - strand, within MPMX20_03097 at 3249.610 kb on - strand, within MPMX20_03097 at 3249.660 kb on - strand, within MPMX20_03097 at 3249.699 kb on + strand, within MPMX20_03097 at 3249.700 kb on + strand, within MPMX20_03097 at 3249.700 kb on + strand, within MPMX20_03097 at 3249.708 kb on - strand, within MPMX20_03097 at 3249.708 kb on - strand, within MPMX20_03097 at 3249.833 kb on + strand, within MPMX20_03097 at 3249.899 kb on + strand, within MPMX20_03097 at 3249.899 kb on + strand, within MPMX20_03097 at 3249.907 kb on - strand, within MPMX20_03097 at 3250.076 kb on + strand at 3250.081 kb on + strand at 3250.089 kb on - strand at 3250.089 kb on - strand at 3250.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 3,247,483 + +0.2 3,247,491 - +1.0 3,247,543 - +0.8 3,247,579 + MPMX20_03094 0.10 -1.4 3,247,611 - MPMX20_03094 0.15 -0.1 3,247,681 - MPMX20_03094 0.24 -0.0 3,247,810 + MPMX20_03094 0.41 +0.8 3,247,884 - MPMX20_03094 0.51 +0.1 3,247,925 + MPMX20_03094 0.57 -3.2 3,248,016 - MPMX20_03094 0.69 -0.3 3,248,085 + MPMX20_03094 0.79 -1.9 3,248,186 - +0.4 3,248,204 + +0.4 3,248,254 - -0.0 3,248,268 - -1.6 3,248,278 + +0.5 3,248,286 - -0.7 3,248,385 - MPMX20_03095 0.63 -0.6 3,248,385 - MPMX20_03095 0.63 +1.9 3,248,385 - MPMX20_03095 0.63 +0.9 3,248,654 + MPMX20_03096 0.34 -1.0 3,248,681 + MPMX20_03096 0.38 -3.3 3,248,697 - MPMX20_03096 0.40 +0.6 3,248,724 + MPMX20_03096 0.44 -3.3 3,248,916 - MPMX20_03096 0.70 -0.1 3,248,936 - MPMX20_03096 0.72 -2.6 3,249,107 + +0.3 3,249,115 - -1.5 3,249,139 - +1.1 3,249,146 - +0.5 3,249,183 - +0.3 3,249,263 + MPMX20_03097 0.15 -0.8 3,249,332 - MPMX20_03097 0.22 +0.6 3,249,409 - MPMX20_03097 0.30 -2.4 3,249,492 - MPMX20_03097 0.39 +0.1 3,249,517 + MPMX20_03097 0.42 -0.1 3,249,547 - MPMX20_03097 0.45 +1.9 3,249,610 - MPMX20_03097 0.51 -0.8 3,249,660 - MPMX20_03097 0.57 +2.1 3,249,699 + MPMX20_03097 0.61 -1.4 3,249,700 + MPMX20_03097 0.61 +1.1 3,249,700 + MPMX20_03097 0.61 -1.6 3,249,708 - MPMX20_03097 0.62 -2.6 3,249,708 - MPMX20_03097 0.62 -2.4 3,249,833 + MPMX20_03097 0.75 +0.8 3,249,899 + MPMX20_03097 0.82 -2.1 3,249,899 + MPMX20_03097 0.82 +0.2 3,249,907 - MPMX20_03097 0.83 -1.2 3,250,076 + +0.3 3,250,081 + +0.1 3,250,089 - -1.2 3,250,089 - +2.0 3,250,089 - +0.4
Or see this region's nucleotide sequence