Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03096

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03094 and MPMX20_03095 are separated by 69 nucleotidesMPMX20_03095 and MPMX20_03096 overlap by 26 nucleotidesMPMX20_03096 and MPMX20_03097 overlap by 17 nucleotidesMPMX20_03097 and MPMX20_03098 overlap by 8 nucleotides MPMX20_03094: MPMX20_03094 - HTH-type transcriptional regulator MlrA, at 3,247,503 to 3,248,243 _03094 MPMX20_03095: MPMX20_03095 - hypothetical protein, at 3,248,313 to 3,248,426 _03095 MPMX20_03096: MPMX20_03096 - Glycine betaine uptake system permease protein YehW, at 3,248,401 to 3,249,138 _03096 MPMX20_03097: MPMX20_03097 - Glycine betaine uptake system ATP-binding protein YehX, at 3,249,122 to 3,250,072 _03097 MPMX20_03098: MPMX20_03098 - Glycine betaine uptake system permease protein YehY, at 3,250,065 to 3,251,222 _03098 Position (kb) 3248 3249 3250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3247.483 kb on + strandat 3247.491 kb on - strandat 3247.543 kb on - strandat 3247.579 kb on + strand, within MPMX20_03094at 3247.611 kb on - strand, within MPMX20_03094at 3247.681 kb on - strand, within MPMX20_03094at 3247.810 kb on + strand, within MPMX20_03094at 3247.884 kb on - strand, within MPMX20_03094at 3247.925 kb on + strand, within MPMX20_03094at 3248.016 kb on - strand, within MPMX20_03094at 3248.085 kb on + strand, within MPMX20_03094at 3248.186 kb on - strandat 3248.204 kb on + strandat 3248.254 kb on - strandat 3248.268 kb on - strandat 3248.278 kb on + strandat 3248.286 kb on - strandat 3248.385 kb on - strand, within MPMX20_03095at 3248.385 kb on - strand, within MPMX20_03095at 3248.385 kb on - strand, within MPMX20_03095at 3248.654 kb on + strand, within MPMX20_03096at 3248.681 kb on + strand, within MPMX20_03096at 3248.697 kb on - strand, within MPMX20_03096at 3248.724 kb on + strand, within MPMX20_03096at 3248.916 kb on - strand, within MPMX20_03096at 3248.936 kb on - strand, within MPMX20_03096at 3249.107 kb on + strandat 3249.115 kb on - strandat 3249.139 kb on - strandat 3249.146 kb on - strandat 3249.183 kb on - strandat 3249.263 kb on + strand, within MPMX20_03097at 3249.332 kb on - strand, within MPMX20_03097at 3249.409 kb on - strand, within MPMX20_03097at 3249.492 kb on - strand, within MPMX20_03097at 3249.517 kb on + strand, within MPMX20_03097at 3249.547 kb on - strand, within MPMX20_03097at 3249.610 kb on - strand, within MPMX20_03097at 3249.660 kb on - strand, within MPMX20_03097at 3249.699 kb on + strand, within MPMX20_03097at 3249.700 kb on + strand, within MPMX20_03097at 3249.700 kb on + strand, within MPMX20_03097at 3249.708 kb on - strand, within MPMX20_03097at 3249.708 kb on - strand, within MPMX20_03097at 3249.833 kb on + strand, within MPMX20_03097at 3249.899 kb on + strand, within MPMX20_03097at 3249.899 kb on + strand, within MPMX20_03097at 3249.907 kb on - strand, within MPMX20_03097at 3250.076 kb on + strandat 3250.081 kb on + strandat 3250.089 kb on - strandat 3250.089 kb on - strandat 3250.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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3,247,483 + +0.2
3,247,491 - +1.0
3,247,543 - +0.8
3,247,579 + MPMX20_03094 0.10 -1.4
3,247,611 - MPMX20_03094 0.15 -0.1
3,247,681 - MPMX20_03094 0.24 -0.0
3,247,810 + MPMX20_03094 0.41 +0.8
3,247,884 - MPMX20_03094 0.51 +0.1
3,247,925 + MPMX20_03094 0.57 -3.2
3,248,016 - MPMX20_03094 0.69 -0.3
3,248,085 + MPMX20_03094 0.79 -1.9
3,248,186 - +0.4
3,248,204 + +0.4
3,248,254 - -0.0
3,248,268 - -1.6
3,248,278 + +0.5
3,248,286 - -0.7
3,248,385 - MPMX20_03095 0.63 -0.6
3,248,385 - MPMX20_03095 0.63 +1.9
3,248,385 - MPMX20_03095 0.63 +0.9
3,248,654 + MPMX20_03096 0.34 -1.0
3,248,681 + MPMX20_03096 0.38 -3.3
3,248,697 - MPMX20_03096 0.40 +0.6
3,248,724 + MPMX20_03096 0.44 -3.3
3,248,916 - MPMX20_03096 0.70 -0.1
3,248,936 - MPMX20_03096 0.72 -2.6
3,249,107 + +0.3
3,249,115 - -1.5
3,249,139 - +1.1
3,249,146 - +0.5
3,249,183 - +0.3
3,249,263 + MPMX20_03097 0.15 -0.8
3,249,332 - MPMX20_03097 0.22 +0.6
3,249,409 - MPMX20_03097 0.30 -2.4
3,249,492 - MPMX20_03097 0.39 +0.1
3,249,517 + MPMX20_03097 0.42 -0.1
3,249,547 - MPMX20_03097 0.45 +1.9
3,249,610 - MPMX20_03097 0.51 -0.8
3,249,660 - MPMX20_03097 0.57 +2.1
3,249,699 + MPMX20_03097 0.61 -1.4
3,249,700 + MPMX20_03097 0.61 +1.1
3,249,700 + MPMX20_03097 0.61 -1.6
3,249,708 - MPMX20_03097 0.62 -2.6
3,249,708 - MPMX20_03097 0.62 -2.4
3,249,833 + MPMX20_03097 0.75 +0.8
3,249,899 + MPMX20_03097 0.82 -2.1
3,249,899 + MPMX20_03097 0.82 +0.2
3,249,907 - MPMX20_03097 0.83 -1.2
3,250,076 + +0.3
3,250,081 + +0.1
3,250,089 - -1.2
3,250,089 - +2.0
3,250,089 - +0.4

Or see this region's nucleotide sequence