Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01957 and MPMX20_01958 are separated by 108 nucleotides MPMX20_01958 and MPMX20_01959 overlap by 20 nucleotides MPMX20_01959 and MPMX20_01960 overlap by 17 nucleotides MPMX20_01960 and MPMX20_01961 overlap by 1 nucleotides MPMX20_01961 and MPMX20_01962 are separated by 1 nucleotides
MPMX20_01957: MPMX20_01957 - Methionine-binding lipoprotein MetQ, at 2,052,914 to 2,053,726
_01957
MPMX20_01958: MPMX20_01958 - Fumarase D, at 2,053,835 to 2,054,044
_01958
MPMX20_01959: MPMX20_01959 - putative glutamine ABC transporter permease protein GlnP, at 2,054,025 to 2,054,711
_01959
MPMX20_01960: MPMX20_01960 - Glutamate/aspartate import permease protein GltJ, at 2,054,695 to 2,055,441
_01960
MPMX20_01961: MPMX20_01961 - Glutamine transport ATP-binding protein GlnQ, at 2,055,441 to 2,056,256
_01961
MPMX20_01962: MPMX20_01962 - ABC transporter glutamine-binding protein GlnH, at 2,056,258 to 2,057,088
_01962
Position (kb)
2054
2055
2056 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2053.701 kb on + strand at 2053.811 kb on + strand at 2053.819 kb on - strand at 2053.819 kb on - strand at 2053.965 kb on - strand, within MPMX20_01958 at 2054.031 kb on - strand at 2054.066 kb on + strand at 2054.066 kb on + strand at 2054.066 kb on + strand at 2054.066 kb on + strand at 2054.066 kb on + strand at 2054.074 kb on - strand at 2054.102 kb on - strand, within MPMX20_01959 at 2054.188 kb on - strand, within MPMX20_01959 at 2054.214 kb on - strand, within MPMX20_01959 at 2054.241 kb on + strand, within MPMX20_01959 at 2054.313 kb on - strand, within MPMX20_01959 at 2054.320 kb on + strand, within MPMX20_01959 at 2054.328 kb on - strand, within MPMX20_01959 at 2054.328 kb on - strand, within MPMX20_01959 at 2054.355 kb on + strand, within MPMX20_01959 at 2054.360 kb on + strand, within MPMX20_01959 at 2054.363 kb on - strand, within MPMX20_01959 at 2054.363 kb on - strand, within MPMX20_01959 at 2054.402 kb on - strand, within MPMX20_01959 at 2054.481 kb on + strand, within MPMX20_01959 at 2054.507 kb on - strand, within MPMX20_01959 at 2054.561 kb on - strand, within MPMX20_01959 at 2054.562 kb on + strand, within MPMX20_01959 at 2054.585 kb on + strand, within MPMX20_01959 at 2054.586 kb on + strand, within MPMX20_01959 at 2054.593 kb on - strand, within MPMX20_01959 at 2054.593 kb on - strand, within MPMX20_01959 at 2054.632 kb on + strand, within MPMX20_01959 at 2054.648 kb on - strand at 2054.656 kb on + strand at 2054.667 kb on - strand at 2054.693 kb on + strand at 2054.761 kb on - strand at 2054.763 kb on + strand at 2054.779 kb on + strand, within MPMX20_01960 at 2054.787 kb on - strand, within MPMX20_01960 at 2054.933 kb on + strand, within MPMX20_01960 at 2055.024 kb on + strand, within MPMX20_01960 at 2055.034 kb on - strand, within MPMX20_01960 at 2055.073 kb on + strand, within MPMX20_01960 at 2055.138 kb on + strand, within MPMX20_01960 at 2055.178 kb on + strand, within MPMX20_01960 at 2055.209 kb on + strand, within MPMX20_01960 at 2055.224 kb on + strand, within MPMX20_01960 at 2055.263 kb on - strand, within MPMX20_01960 at 2055.333 kb on - strand, within MPMX20_01960 at 2055.429 kb on - strand at 2055.449 kb on + strand at 2055.628 kb on + strand, within MPMX20_01961 at 2055.665 kb on - strand, within MPMX20_01961 at 2055.670 kb on - strand, within MPMX20_01961 at 2055.727 kb on + strand, within MPMX20_01961 at 2055.735 kb on - strand, within MPMX20_01961 at 2055.787 kb on + strand, within MPMX20_01961 at 2055.843 kb on + strand, within MPMX20_01961 at 2055.843 kb on + strand, within MPMX20_01961 at 2055.851 kb on - strand, within MPMX20_01961 at 2055.851 kb on - strand, within MPMX20_01961 at 2055.979 kb on + strand, within MPMX20_01961 at 2056.028 kb on + strand, within MPMX20_01961 at 2056.064 kb on + strand, within MPMX20_01961 at 2056.064 kb on + strand, within MPMX20_01961 at 2056.067 kb on - strand, within MPMX20_01961 at 2056.106 kb on - strand, within MPMX20_01961 at 2056.115 kb on + strand, within MPMX20_01961 at 2056.127 kb on + strand, within MPMX20_01961 at 2056.279 kb on - strand at 2056.287 kb on + strand at 2056.287 kb on + strand at 2056.290 kb on + strand at 2056.295 kb on - strand at 2056.379 kb on + strand, within MPMX20_01962 at 2056.379 kb on + strand, within MPMX20_01962 at 2056.379 kb on + strand, within MPMX20_01962 at 2056.379 kb on + strand, within MPMX20_01962 at 2056.387 kb on - strand, within MPMX20_01962 at 2056.435 kb on - strand, within MPMX20_01962
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 2,053,701 + -1.3 2,053,811 + -0.8 2,053,819 - +1.6 2,053,819 - -1.3 2,053,965 - MPMX20_01958 0.62 -3.0 2,054,031 - +1.7 2,054,066 + +0.0 2,054,066 + +0.6 2,054,066 + +0.5 2,054,066 + +0.1 2,054,066 + +0.4 2,054,074 - +1.3 2,054,102 - MPMX20_01959 0.11 -3.4 2,054,188 - MPMX20_01959 0.24 +0.4 2,054,214 - MPMX20_01959 0.28 -1.0 2,054,241 + MPMX20_01959 0.31 -0.1 2,054,313 - MPMX20_01959 0.42 -1.6 2,054,320 + MPMX20_01959 0.43 -3.9 2,054,328 - MPMX20_01959 0.44 -0.8 2,054,328 - MPMX20_01959 0.44 -0.1 2,054,355 + MPMX20_01959 0.48 -3.2 2,054,360 + MPMX20_01959 0.49 +3.0 2,054,363 - MPMX20_01959 0.49 +1.1 2,054,363 - MPMX20_01959 0.49 +0.1 2,054,402 - MPMX20_01959 0.55 +0.6 2,054,481 + MPMX20_01959 0.66 +0.2 2,054,507 - MPMX20_01959 0.70 +0.7 2,054,561 - MPMX20_01959 0.78 +2.7 2,054,562 + MPMX20_01959 0.78 -2.8 2,054,585 + MPMX20_01959 0.82 +0.7 2,054,586 + MPMX20_01959 0.82 -3.5 2,054,593 - MPMX20_01959 0.83 -1.0 2,054,593 - MPMX20_01959 0.83 -0.8 2,054,632 + MPMX20_01959 0.88 +0.8 2,054,648 - +0.3 2,054,656 + -2.5 2,054,667 - +0.3 2,054,693 + -2.2 2,054,761 - -0.4 2,054,763 + +0.7 2,054,779 + MPMX20_01960 0.11 +0.7 2,054,787 - MPMX20_01960 0.12 -2.5 2,054,933 + MPMX20_01960 0.32 -0.7 2,055,024 + MPMX20_01960 0.44 -2.8 2,055,034 - MPMX20_01960 0.45 -2.5 2,055,073 + MPMX20_01960 0.51 -2.9 2,055,138 + MPMX20_01960 0.59 -0.5 2,055,178 + MPMX20_01960 0.65 -1.1 2,055,209 + MPMX20_01960 0.69 -0.8 2,055,224 + MPMX20_01960 0.71 -3.9 2,055,263 - MPMX20_01960 0.76 -0.8 2,055,333 - MPMX20_01960 0.85 -2.3 2,055,429 - +0.0 2,055,449 + -0.8 2,055,628 + MPMX20_01961 0.23 -2.3 2,055,665 - MPMX20_01961 0.27 -3.6 2,055,670 - MPMX20_01961 0.28 -0.5 2,055,727 + MPMX20_01961 0.35 +0.5 2,055,735 - MPMX20_01961 0.36 -2.3 2,055,787 + MPMX20_01961 0.42 -0.6 2,055,843 + MPMX20_01961 0.49 -1.6 2,055,843 + MPMX20_01961 0.49 +2.9 2,055,851 - MPMX20_01961 0.50 +0.7 2,055,851 - MPMX20_01961 0.50 +0.3 2,055,979 + MPMX20_01961 0.66 +0.9 2,056,028 + MPMX20_01961 0.72 +0.3 2,056,064 + MPMX20_01961 0.76 +0.6 2,056,064 + MPMX20_01961 0.76 +1.3 2,056,067 - MPMX20_01961 0.77 +0.2 2,056,106 - MPMX20_01961 0.81 -0.6 2,056,115 + MPMX20_01961 0.83 +0.5 2,056,127 + MPMX20_01961 0.84 -0.5 2,056,279 - -2.1 2,056,287 + +0.2 2,056,287 + -1.5 2,056,290 + -0.0 2,056,295 - -1.5 2,056,379 + MPMX20_01962 0.15 -0.8 2,056,379 + MPMX20_01962 0.15 -1.3 2,056,379 + MPMX20_01962 0.15 +0.4 2,056,379 + MPMX20_01962 0.15 -0.2 2,056,387 - MPMX20_01962 0.16 +2.0 2,056,435 - MPMX20_01962 0.21 +0.2
Or see this region's nucleotide sequence