Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01960

Experiment: Xylitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01957 and MPMX20_01958 are separated by 108 nucleotidesMPMX20_01958 and MPMX20_01959 overlap by 20 nucleotidesMPMX20_01959 and MPMX20_01960 overlap by 17 nucleotidesMPMX20_01960 and MPMX20_01961 overlap by 1 nucleotidesMPMX20_01961 and MPMX20_01962 are separated by 1 nucleotides MPMX20_01957: MPMX20_01957 - Methionine-binding lipoprotein MetQ, at 2,052,914 to 2,053,726 _01957 MPMX20_01958: MPMX20_01958 - Fumarase D, at 2,053,835 to 2,054,044 _01958 MPMX20_01959: MPMX20_01959 - putative glutamine ABC transporter permease protein GlnP, at 2,054,025 to 2,054,711 _01959 MPMX20_01960: MPMX20_01960 - Glutamate/aspartate import permease protein GltJ, at 2,054,695 to 2,055,441 _01960 MPMX20_01961: MPMX20_01961 - Glutamine transport ATP-binding protein GlnQ, at 2,055,441 to 2,056,256 _01961 MPMX20_01962: MPMX20_01962 - ABC transporter glutamine-binding protein GlnH, at 2,056,258 to 2,057,088 _01962 Position (kb) 2054 2055 2056Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2053.701 kb on + strandat 2053.811 kb on + strandat 2053.819 kb on - strandat 2053.819 kb on - strandat 2053.965 kb on - strand, within MPMX20_01958at 2054.031 kb on - strandat 2054.066 kb on + strandat 2054.066 kb on + strandat 2054.066 kb on + strandat 2054.066 kb on + strandat 2054.066 kb on + strandat 2054.074 kb on - strandat 2054.102 kb on - strand, within MPMX20_01959at 2054.188 kb on - strand, within MPMX20_01959at 2054.214 kb on - strand, within MPMX20_01959at 2054.241 kb on + strand, within MPMX20_01959at 2054.313 kb on - strand, within MPMX20_01959at 2054.320 kb on + strand, within MPMX20_01959at 2054.328 kb on - strand, within MPMX20_01959at 2054.328 kb on - strand, within MPMX20_01959at 2054.355 kb on + strand, within MPMX20_01959at 2054.360 kb on + strand, within MPMX20_01959at 2054.363 kb on - strand, within MPMX20_01959at 2054.363 kb on - strand, within MPMX20_01959at 2054.402 kb on - strand, within MPMX20_01959at 2054.481 kb on + strand, within MPMX20_01959at 2054.507 kb on - strand, within MPMX20_01959at 2054.561 kb on - strand, within MPMX20_01959at 2054.562 kb on + strand, within MPMX20_01959at 2054.585 kb on + strand, within MPMX20_01959at 2054.586 kb on + strand, within MPMX20_01959at 2054.593 kb on - strand, within MPMX20_01959at 2054.593 kb on - strand, within MPMX20_01959at 2054.632 kb on + strand, within MPMX20_01959at 2054.648 kb on - strandat 2054.656 kb on + strandat 2054.667 kb on - strandat 2054.693 kb on + strandat 2054.761 kb on - strandat 2054.763 kb on + strandat 2054.779 kb on + strand, within MPMX20_01960at 2054.787 kb on - strand, within MPMX20_01960at 2054.933 kb on + strand, within MPMX20_01960at 2055.024 kb on + strand, within MPMX20_01960at 2055.034 kb on - strand, within MPMX20_01960at 2055.073 kb on + strand, within MPMX20_01960at 2055.138 kb on + strand, within MPMX20_01960at 2055.178 kb on + strand, within MPMX20_01960at 2055.209 kb on + strand, within MPMX20_01960at 2055.224 kb on + strand, within MPMX20_01960at 2055.263 kb on - strand, within MPMX20_01960at 2055.333 kb on - strand, within MPMX20_01960at 2055.429 kb on - strandat 2055.449 kb on + strandat 2055.628 kb on + strand, within MPMX20_01961at 2055.665 kb on - strand, within MPMX20_01961at 2055.670 kb on - strand, within MPMX20_01961at 2055.727 kb on + strand, within MPMX20_01961at 2055.735 kb on - strand, within MPMX20_01961at 2055.787 kb on + strand, within MPMX20_01961at 2055.843 kb on + strand, within MPMX20_01961at 2055.843 kb on + strand, within MPMX20_01961at 2055.851 kb on - strand, within MPMX20_01961at 2055.851 kb on - strand, within MPMX20_01961at 2055.979 kb on + strand, within MPMX20_01961at 2056.028 kb on + strand, within MPMX20_01961at 2056.064 kb on + strand, within MPMX20_01961at 2056.064 kb on + strand, within MPMX20_01961at 2056.067 kb on - strand, within MPMX20_01961at 2056.106 kb on - strand, within MPMX20_01961at 2056.115 kb on + strand, within MPMX20_01961at 2056.127 kb on + strand, within MPMX20_01961at 2056.279 kb on - strandat 2056.287 kb on + strandat 2056.287 kb on + strandat 2056.290 kb on + strandat 2056.295 kb on - strandat 2056.379 kb on + strand, within MPMX20_01962at 2056.379 kb on + strand, within MPMX20_01962at 2056.379 kb on + strand, within MPMX20_01962at 2056.379 kb on + strand, within MPMX20_01962at 2056.387 kb on - strand, within MPMX20_01962at 2056.435 kb on - strand, within MPMX20_01962

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
remove
2,053,701 + -1.3
2,053,811 + -0.8
2,053,819 - +1.6
2,053,819 - -1.3
2,053,965 - MPMX20_01958 0.62 -3.0
2,054,031 - +1.7
2,054,066 + +0.0
2,054,066 + +0.6
2,054,066 + +0.5
2,054,066 + +0.1
2,054,066 + +0.4
2,054,074 - +1.3
2,054,102 - MPMX20_01959 0.11 -3.4
2,054,188 - MPMX20_01959 0.24 +0.4
2,054,214 - MPMX20_01959 0.28 -1.0
2,054,241 + MPMX20_01959 0.31 -0.1
2,054,313 - MPMX20_01959 0.42 -1.6
2,054,320 + MPMX20_01959 0.43 -3.9
2,054,328 - MPMX20_01959 0.44 -0.8
2,054,328 - MPMX20_01959 0.44 -0.1
2,054,355 + MPMX20_01959 0.48 -3.2
2,054,360 + MPMX20_01959 0.49 +3.0
2,054,363 - MPMX20_01959 0.49 +1.1
2,054,363 - MPMX20_01959 0.49 +0.1
2,054,402 - MPMX20_01959 0.55 +0.6
2,054,481 + MPMX20_01959 0.66 +0.2
2,054,507 - MPMX20_01959 0.70 +0.7
2,054,561 - MPMX20_01959 0.78 +2.7
2,054,562 + MPMX20_01959 0.78 -2.8
2,054,585 + MPMX20_01959 0.82 +0.7
2,054,586 + MPMX20_01959 0.82 -3.5
2,054,593 - MPMX20_01959 0.83 -1.0
2,054,593 - MPMX20_01959 0.83 -0.8
2,054,632 + MPMX20_01959 0.88 +0.8
2,054,648 - +0.3
2,054,656 + -2.5
2,054,667 - +0.3
2,054,693 + -2.2
2,054,761 - -0.4
2,054,763 + +0.7
2,054,779 + MPMX20_01960 0.11 +0.7
2,054,787 - MPMX20_01960 0.12 -2.5
2,054,933 + MPMX20_01960 0.32 -0.7
2,055,024 + MPMX20_01960 0.44 -2.8
2,055,034 - MPMX20_01960 0.45 -2.5
2,055,073 + MPMX20_01960 0.51 -2.9
2,055,138 + MPMX20_01960 0.59 -0.5
2,055,178 + MPMX20_01960 0.65 -1.1
2,055,209 + MPMX20_01960 0.69 -0.8
2,055,224 + MPMX20_01960 0.71 -3.9
2,055,263 - MPMX20_01960 0.76 -0.8
2,055,333 - MPMX20_01960 0.85 -2.3
2,055,429 - +0.0
2,055,449 + -0.8
2,055,628 + MPMX20_01961 0.23 -2.3
2,055,665 - MPMX20_01961 0.27 -3.6
2,055,670 - MPMX20_01961 0.28 -0.5
2,055,727 + MPMX20_01961 0.35 +0.5
2,055,735 - MPMX20_01961 0.36 -2.3
2,055,787 + MPMX20_01961 0.42 -0.6
2,055,843 + MPMX20_01961 0.49 -1.6
2,055,843 + MPMX20_01961 0.49 +2.9
2,055,851 - MPMX20_01961 0.50 +0.7
2,055,851 - MPMX20_01961 0.50 +0.3
2,055,979 + MPMX20_01961 0.66 +0.9
2,056,028 + MPMX20_01961 0.72 +0.3
2,056,064 + MPMX20_01961 0.76 +0.6
2,056,064 + MPMX20_01961 0.76 +1.3
2,056,067 - MPMX20_01961 0.77 +0.2
2,056,106 - MPMX20_01961 0.81 -0.6
2,056,115 + MPMX20_01961 0.83 +0.5
2,056,127 + MPMX20_01961 0.84 -0.5
2,056,279 - -2.1
2,056,287 + +0.2
2,056,287 + -1.5
2,056,290 + -0.0
2,056,295 - -1.5
2,056,379 + MPMX20_01962 0.15 -0.8
2,056,379 + MPMX20_01962 0.15 -1.3
2,056,379 + MPMX20_01962 0.15 +0.4
2,056,379 + MPMX20_01962 0.15 -0.2
2,056,387 - MPMX20_01962 0.16 +2.0
2,056,435 - MPMX20_01962 0.21 +0.2

Or see this region's nucleotide sequence