Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01550

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01549 and MPMX20_01550 are separated by 114 nucleotidesMPMX20_01550 and MPMX20_01551 are separated by 517 nucleotides MPMX20_01549: MPMX20_01549 - ATP-binding/permease protein CydD, at 1,621,491 to 1,623,257 _01549 MPMX20_01550: MPMX20_01550 - Thioredoxin reductase, at 1,623,372 to 1,624,367 _01550 MPMX20_01551: MPMX20_01551 - Leucine-responsive regulatory protein, at 1,624,885 to 1,625,379 _01551 Position (kb) 1623 1624 1625Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1622.504 kb on + strand, within MPMX20_01549at 1622.534 kb on + strand, within MPMX20_01549at 1622.534 kb on - strand, within MPMX20_01549at 1622.540 kb on - strand, within MPMX20_01549at 1622.873 kb on + strand, within MPMX20_01549at 1622.881 kb on - strand, within MPMX20_01549at 1622.913 kb on - strand, within MPMX20_01549at 1623.053 kb on + strand, within MPMX20_01549at 1623.150 kb on - strandat 1623.223 kb on - strandat 1623.228 kb on + strandat 1623.578 kb on - strand, within MPMX20_01550at 1623.670 kb on + strand, within MPMX20_01550at 1623.791 kb on - strand, within MPMX20_01550at 1623.835 kb on - strand, within MPMX20_01550at 1624.267 kb on + strand, within MPMX20_01550at 1624.267 kb on + strand, within MPMX20_01550at 1624.267 kb on + strand, within MPMX20_01550at 1624.267 kb on + strand, within MPMX20_01550at 1624.275 kb on - strandat 1624.275 kb on - strandat 1624.275 kb on - strandat 1624.323 kb on + strandat 1624.323 kb on + strandat 1624.323 kb on + strandat 1624.325 kb on + strandat 1624.333 kb on - strandat 1624.336 kb on + strandat 1624.343 kb on - strandat 1624.454 kb on - strandat 1624.467 kb on + strandat 1624.524 kb on - strandat 1624.526 kb on - strandat 1624.583 kb on + strandat 1624.647 kb on - strandat 1624.695 kb on + strandat 1624.716 kb on - strandat 1624.819 kb on + strandat 1624.819 kb on + strandat 1624.819 kb on + strandat 1624.827 kb on - strandat 1624.827 kb on - strandat 1624.831 kb on + strandat 1624.832 kb on - strandat 1624.839 kb on - strandat 1624.841 kb on + strandat 1624.841 kb on + strandat 1624.841 kb on + strandat 1624.842 kb on + strandat 1624.842 kb on + strandat 1624.843 kb on + strandat 1624.851 kb on - strandat 1624.855 kb on - strandat 1624.856 kb on - strandat 1624.863 kb on + strandat 1624.923 kb on - strandat 1624.923 kb on - strandat 1625.019 kb on + strand, within MPMX20_01551at 1625.027 kb on - strand, within MPMX20_01551at 1625.034 kb on - strand, within MPMX20_01551at 1625.061 kb on + strand, within MPMX20_01551at 1625.061 kb on + strand, within MPMX20_01551at 1625.061 kb on + strand, within MPMX20_01551at 1625.069 kb on - strand, within MPMX20_01551at 1625.069 kb on - strand, within MPMX20_01551at 1625.069 kb on - strand, within MPMX20_01551at 1625.069 kb on - strand, within MPMX20_01551at 1625.071 kb on + strand, within MPMX20_01551at 1625.074 kb on - strand, within MPMX20_01551at 1625.082 kb on - strand, within MPMX20_01551at 1625.272 kb on - strand, within MPMX20_01551at 1625.285 kb on - strand, within MPMX20_01551at 1625.321 kb on + strand, within MPMX20_01551at 1625.329 kb on - strand, within MPMX20_01551at 1625.329 kb on - strand, within MPMX20_01551at 1625.349 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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1,622,504 + MPMX20_01549 0.57 -1.0
1,622,534 + MPMX20_01549 0.59 -1.9
1,622,534 - MPMX20_01549 0.59 -2.5
1,622,540 - MPMX20_01549 0.59 -0.8
1,622,873 + MPMX20_01549 0.78 -1.8
1,622,881 - MPMX20_01549 0.79 -1.2
1,622,913 - MPMX20_01549 0.80 -1.8
1,623,053 + MPMX20_01549 0.88 -1.0
1,623,150 - -2.7
1,623,223 - -2.0
1,623,228 + -1.4
1,623,578 - MPMX20_01550 0.21 +2.6
1,623,670 + MPMX20_01550 0.30 -2.4
1,623,791 - MPMX20_01550 0.42 -1.8
1,623,835 - MPMX20_01550 0.46 -0.8
1,624,267 + MPMX20_01550 0.90 -2.2
1,624,267 + MPMX20_01550 0.90 -1.5
1,624,267 + MPMX20_01550 0.90 +1.8
1,624,267 + MPMX20_01550 0.90 +0.2
1,624,275 - -2.5
1,624,275 - -2.1
1,624,275 - -2.5
1,624,323 + -2.5
1,624,323 + +1.4
1,624,323 + -1.0
1,624,325 + -2.4
1,624,333 - -2.5
1,624,336 + -1.9
1,624,343 - -1.0
1,624,454 - -0.1
1,624,467 + -1.0
1,624,524 - -0.1
1,624,526 - -0.8
1,624,583 + +0.3
1,624,647 - +1.7
1,624,695 + +0.2
1,624,716 - +1.3
1,624,819 + +1.1
1,624,819 + +1.1
1,624,819 + -2.5
1,624,827 - +1.1
1,624,827 - +0.7
1,624,831 + -0.5
1,624,832 - +0.5
1,624,839 - -2.0
1,624,841 + -2.3
1,624,841 + -0.1
1,624,841 + +1.0
1,624,842 + +1.2
1,624,842 + -3.0
1,624,843 + -1.4
1,624,851 - -3.3
1,624,855 - -1.7
1,624,856 - -1.5
1,624,863 + +0.8
1,624,923 - -3.8
1,624,923 - -1.2
1,625,019 + MPMX20_01551 0.27 -4.3
1,625,027 - MPMX20_01551 0.29 +0.2
1,625,034 - MPMX20_01551 0.30 +0.9
1,625,061 + MPMX20_01551 0.36 +1.3
1,625,061 + MPMX20_01551 0.36 -2.6
1,625,061 + MPMX20_01551 0.36 -0.8
1,625,069 - MPMX20_01551 0.37 -0.5
1,625,069 - MPMX20_01551 0.37 -2.7
1,625,069 - MPMX20_01551 0.37 +0.1
1,625,069 - MPMX20_01551 0.37 -2.5
1,625,071 + MPMX20_01551 0.38 +0.5
1,625,074 - MPMX20_01551 0.38 -0.2
1,625,082 - MPMX20_01551 0.40 +1.3
1,625,272 - MPMX20_01551 0.78 +0.8
1,625,285 - MPMX20_01551 0.81 -0.5
1,625,321 + MPMX20_01551 0.88 -2.9
1,625,329 - MPMX20_01551 0.90 +0.4
1,625,329 - MPMX20_01551 0.90 -0.9
1,625,349 + -0.9

Or see this region's nucleotide sequence