Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00020 and MPMX20_00021 are separated by 91 nucleotides MPMX20_00021 and MPMX20_00022 overlap by 11 nucleotides MPMX20_00022 and MPMX20_00023 overlap by 17 nucleotides
MPMX20_00020: MPMX20_00020 - 6-phospho-alpha-glucosidase, at 21,423 to 22,745
_00020
MPMX20_00021: MPMX20_00021 - Inner membrane protein YidH, at 22,837 to 23,184
_00021
MPMX20_00022: MPMX20_00022 - Inner membrane protein YidG, at 23,174 to 23,521
_00022
MPMX20_00023: MPMX20_00023 - D-serine dehydratase, at 23,505 to 24,797
_00023
Position (kb)
22
23
24 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 21.841 kb on + strand, within MPMX20_00020 at 21.856 kb on + strand, within MPMX20_00020 at 21.864 kb on - strand, within MPMX20_00020 at 21.865 kb on - strand, within MPMX20_00020 at 21.973 kb on + strand, within MPMX20_00020 at 21.981 kb on - strand, within MPMX20_00020 at 21.981 kb on - strand, within MPMX20_00020 at 21.990 kb on - strand, within MPMX20_00020 at 22.006 kb on + strand, within MPMX20_00020 at 22.185 kb on + strand, within MPMX20_00020 at 22.250 kb on + strand, within MPMX20_00020 at 22.302 kb on + strand, within MPMX20_00020 at 22.307 kb on + strand, within MPMX20_00020 at 22.307 kb on + strand, within MPMX20_00020 at 22.315 kb on - strand, within MPMX20_00020 at 22.366 kb on - strand, within MPMX20_00020 at 22.418 kb on - strand, within MPMX20_00020 at 22.461 kb on + strand, within MPMX20_00020 at 22.527 kb on - strand, within MPMX20_00020 at 22.527 kb on - strand, within MPMX20_00020 at 22.536 kb on - strand, within MPMX20_00020 at 22.545 kb on + strand, within MPMX20_00020 at 22.571 kb on - strand, within MPMX20_00020 at 22.609 kb on + strand, within MPMX20_00020 at 22.609 kb on + strand, within MPMX20_00020 at 22.609 kb on + strand, within MPMX20_00020 at 22.609 kb on + strand, within MPMX20_00020 at 22.653 kb on - strand at 22.655 kb on + strand at 22.655 kb on + strand at 22.655 kb on + strand at 22.663 kb on - strand at 22.724 kb on + strand at 22.724 kb on + strand at 22.737 kb on - strand at 22.811 kb on - strand at 22.861 kb on + strand at 22.919 kb on - strand, within MPMX20_00021 at 22.929 kb on - strand, within MPMX20_00021 at 22.942 kb on + strand, within MPMX20_00021 at 22.942 kb on + strand, within MPMX20_00021 at 22.942 kb on + strand, within MPMX20_00021 at 22.950 kb on - strand, within MPMX20_00021 at 22.950 kb on - strand, within MPMX20_00021 at 22.950 kb on - strand, within MPMX20_00021 at 22.957 kb on - strand, within MPMX20_00021 at 22.989 kb on - strand, within MPMX20_00021 at 22.989 kb on - strand, within MPMX20_00021 at 22.996 kb on + strand, within MPMX20_00021 at 22.996 kb on + strand, within MPMX20_00021 at 22.996 kb on + strand, within MPMX20_00021 at 23.004 kb on - strand, within MPMX20_00021 at 23.169 kb on + strand at 23.234 kb on + strand, within MPMX20_00022 at 23.320 kb on - strand, within MPMX20_00022 at 23.430 kb on - strand, within MPMX20_00022 at 23.430 kb on - strand, within MPMX20_00022 at 23.501 kb on - strand at 23.538 kb on - strand at 23.572 kb on - strand at 23.574 kb on + strand at 23.574 kb on + strand at 23.583 kb on + strand at 23.713 kb on + strand, within MPMX20_00023 at 23.713 kb on + strand, within MPMX20_00023 at 23.848 kb on - strand, within MPMX20_00023 at 23.848 kb on - strand, within MPMX20_00023 at 23.874 kb on + strand, within MPMX20_00023 at 23.975 kb on - strand, within MPMX20_00023 at 23.987 kb on - strand, within MPMX20_00023 at 24.050 kb on + strand, within MPMX20_00023 at 24.060 kb on - strand, within MPMX20_00023 at 24.066 kb on - strand, within MPMX20_00023 at 24.124 kb on - strand, within MPMX20_00023 at 24.148 kb on + strand, within MPMX20_00023 at 24.148 kb on + strand, within MPMX20_00023 at 24.148 kb on + strand, within MPMX20_00023 at 24.148 kb on + strand, within MPMX20_00023 at 24.148 kb on + strand, within MPMX20_00023 at 24.148 kb on + strand, within MPMX20_00023 at 24.156 kb on - strand, within MPMX20_00023 at 24.156 kb on - strand, within MPMX20_00023 at 24.179 kb on + strand, within MPMX20_00023 at 24.182 kb on - strand, within MPMX20_00023
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 21,841 + MPMX20_00020 0.32 +0.3 21,856 + MPMX20_00020 0.33 -1.0 21,864 - MPMX20_00020 0.33 -4.5 21,865 - MPMX20_00020 0.33 +1.8 21,973 + MPMX20_00020 0.42 +0.3 21,981 - MPMX20_00020 0.42 -3.7 21,981 - MPMX20_00020 0.42 +0.2 21,990 - MPMX20_00020 0.43 -2.8 22,006 + MPMX20_00020 0.44 -0.4 22,185 + MPMX20_00020 0.58 -1.0 22,250 + MPMX20_00020 0.63 +0.4 22,302 + MPMX20_00020 0.66 +0.4 22,307 + MPMX20_00020 0.67 -1.3 22,307 + MPMX20_00020 0.67 +1.1 22,315 - MPMX20_00020 0.67 -0.9 22,366 - MPMX20_00020 0.71 +0.2 22,418 - MPMX20_00020 0.75 -1.3 22,461 + MPMX20_00020 0.78 -2.0 22,527 - MPMX20_00020 0.83 -0.4 22,527 - MPMX20_00020 0.83 -1.6 22,536 - MPMX20_00020 0.84 +0.6 22,545 + MPMX20_00020 0.85 -3.5 22,571 - MPMX20_00020 0.87 -3.5 22,609 + MPMX20_00020 0.90 -1.3 22,609 + MPMX20_00020 0.90 +1.5 22,609 + MPMX20_00020 0.90 +1.0 22,609 + MPMX20_00020 0.90 -0.1 22,653 - -2.9 22,655 + +0.0 22,655 + +0.2 22,655 + +1.5 22,663 - +1.6 22,724 + -0.1 22,724 + +0.6 22,737 - +0.5 22,811 - +0.5 22,861 + +0.4 22,919 - MPMX20_00021 0.24 -0.2 22,929 - MPMX20_00021 0.26 -0.5 22,942 + MPMX20_00021 0.30 -1.1 22,942 + MPMX20_00021 0.30 +0.6 22,942 + MPMX20_00021 0.30 -0.8 22,950 - MPMX20_00021 0.32 -2.0 22,950 - MPMX20_00021 0.32 -1.3 22,950 - MPMX20_00021 0.32 -1.9 22,957 - MPMX20_00021 0.34 -0.3 22,989 - MPMX20_00021 0.44 -2.4 22,989 - MPMX20_00021 0.44 -3.4 22,996 + MPMX20_00021 0.46 -2.1 22,996 + MPMX20_00021 0.46 -0.2 22,996 + MPMX20_00021 0.46 -0.5 23,004 - MPMX20_00021 0.48 -0.6 23,169 + -2.1 23,234 + MPMX20_00022 0.17 +0.5 23,320 - MPMX20_00022 0.42 -0.2 23,430 - MPMX20_00022 0.74 +0.8 23,430 - MPMX20_00022 0.74 +0.1 23,501 - -1.8 23,538 - -0.0 23,572 - +0.1 23,574 + +0.6 23,574 + -1.6 23,583 + -1.4 23,713 + MPMX20_00023 0.16 -0.8 23,713 + MPMX20_00023 0.16 -2.4 23,848 - MPMX20_00023 0.27 -2.4 23,848 - MPMX20_00023 0.27 +1.9 23,874 + MPMX20_00023 0.29 -0.4 23,975 - MPMX20_00023 0.36 -2.6 23,987 - MPMX20_00023 0.37 +1.4 24,050 + MPMX20_00023 0.42 -0.3 24,060 - MPMX20_00023 0.43 +2.6 24,066 - MPMX20_00023 0.43 +1.2 24,124 - MPMX20_00023 0.48 -1.7 24,148 + MPMX20_00023 0.50 +1.1 24,148 + MPMX20_00023 0.50 -1.7 24,148 + MPMX20_00023 0.50 -0.0 24,148 + MPMX20_00023 0.50 +0.8 24,148 + MPMX20_00023 0.50 +0.4 24,148 + MPMX20_00023 0.50 -0.2 24,156 - MPMX20_00023 0.50 -1.3 24,156 - MPMX20_00023 0.50 -1.5 24,179 + MPMX20_00023 0.52 -1.2 24,182 - MPMX20_00023 0.52 +1.0
Or see this region's nucleotide sequence